FvH4_4g05190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010950
Physical Location & Seq
Reverse (-)
4461500 .. 4464012
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05190.t1

Sequence Viewer

Length: 996 bp
ATGGTGGTTGAAAATAAACTTTTTAACTGGACATTTGCTTTTGGCGGAAAGAGGTTAAATTGGGGAGAAGATAACAAAGACGTGGCAGATGGAAAGCTCAGAGCGGTAATGGAGAGCAGTGTCCTGGTCCTGACACACCCTCAACCATGGCGAAGACCCAGATACTCCCTTCACTCTCTTTTCCAAAACCCACCTTCTCCTTCCTCTCATTTACTTCGCTCTTACACTACTTGCTACCGCCGCTGGGATTCCAATGCCGAAACCATTCGCTCCAAAACATTCGGTTTTAGCTTCAGAGACAAACGAAACCAAGATGAATATGAAGAAGAAGAAGATGACTACGAGGAAGAAGAGGATTATGGTTACGGTACAAGTAAAGGGAAGAAGAAGAAGAGAAGGAGGTGGTGGTCAGATGGGCCCTCTGAAATGGAGGAAGGCCCTTCTGGGGTCTTGGAGGAAGCCATTGACAGTGTCTGGATTTTCAAGGTGTTCAAATCTTATGGTTGGGCATTTCCATTTATTATCATATCTCTGCTGCTATCTTCGGGTCCAAAAGCATTCCTCATGGCATTAGCACTTCCCCTTGGTCAGTCCGCCCTTTCACTGGCATTTGAGAAGTTATGGGGAAGGACAGAAAGAAGGCCAAGACGCAAGTCCAGGATGAGAAGGAAACCATCTGCCACCAGTGAAGCTAGTGTTAAAATGGACGAAGAAGAAACCTATAATGAAGATCAGGAAACTGATAACAAAAAGATGGACTACCAATCTTGGGTAGTTGGGAATGATGTTTCAGTTGGTAATAGTGGTGAAATGTCAAGTTTGGGTGGATGGGATGATCTTGAAAGAATGCAATTTGAAAGGAGGAAATCTCGAAGAAAGTCTAGAGGGAAGGGAAAGTTGAGTCGGAGAGAAAGAAATAGTGACACACCTCTTCTGCTGAGGTTGTTGATTGCAGTTTTCCCTTTTTTGGGTTCATGGACAAAGATATTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

38.68

Weight (kDa)

9.34

Isoelectric Point (pI)

67.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33250 AT3G04310 AT3G04310
fragaria_vesca FvH4_4g05190 FvH4_4g05190
malus_domestica MD13G1225800.v1.1 MD16G1230800.v1.1
prunus_persica Prupe.1G052600_v2.0.a1
pyrus_communis pycom16g19270
rosa_chinensis RchiOBHm_Chr4g0396101
rosa_laevigata RLG00000009572
rosa_multiflora Rmu_sc0006325.1_g000019 Rmu_sc0007010.1_g000013 Rmu_sc0009634.1_g000010
rosa_roxburghii Rroxscaffold_5G00340900
rosa_rugosa Rorug03G0352600
rosa_samantha Rh4BG064200 Rh4CG070800 Rh4DG061200
rosa_wichuraiana Rw4G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 104
AciI CCGC 5 cut(s) 45, 104, 238, 241, 594
AcuI CTGAAG 1 cut(s) 277
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 6 cut(s) 244, 445, 604, 769, 967, 968
AgsI TTSAA 5 cut(s) 11, 484, 493, 842, 857
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 2 cut(s) 123, 656
AluBI AGCT 3 cut(s) 97, 291, 692
AluI AGCT 3 cut(s) 97, 291, 692
Alw26I GTCTC 1 cut(s) 291
AlwNI CAGNNNCTG 1 cut(s) 474
AoxI GGCC 3 cut(s) 416, 436, 641
ApaI GGGCCC 1 cut(s) 420
ApeKI GCWGC 1 cut(s) 535
Asp700I GAANNNNTTC 1 cut(s) 264
AspS9I GGNCC 5 cut(s) 127, 416, 417, 437, 548
AsuHPI GGTGA 1 cut(s) 818
AvaII GGWCC 2 cut(s) 127, 548
BaeGI GKGCMC 1 cut(s) 420
BanII GRGCYC 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 160
BbvCI CCTCAGC 1 cut(s) 938
BbvI GCAGC 1 cut(s) 522
BccI CCATC 5 cut(s) 83, 407, 682, 748, 822
BciT130I CCWGG 2 cut(s) 125, 658
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 2 cut(s) 693, 882
BisI GCNGC 2 cut(s) 241, 536
BlsI GCNGC 2 cut(s) 242, 537
Bme1390I CCNGG 2 cut(s) 125, 658
Bme18I GGWCC 2 cut(s) 127, 548
BmgBI CACGTC 1 cut(s) 82
BmgT120I GGNCC 5 cut(s) 127, 416, 417, 437, 548
BmiI GGNNCC 2 cut(s) 418, 549
BmrFI CCNGG 2 cut(s) 125, 658
BoxI GACNNNNGTC 1 cut(s) 652
BpiI GAAGAC 1 cut(s) 160
BplI GAGNNNNNCTC 2 cut(s) 853, 885
Bpu10I CCTNAGC 1 cut(s) 938
BsaJI CCNNGG 2 cut(s) 146, 583
Bsc4I CCNNNNNNNGG 6 cut(s) 244, 445, 604, 769, 967, 968
Bse1I ACTGG 3 cut(s) 32, 609, 684
BseBI CCWGG 2 cut(s) 125, 658
BseDI CCNNGG 2 cut(s) 146, 583
BseGI GGATG 3 cut(s) 666, 833, 838
BseLI CCNNNNNNNGG 6 cut(s) 244, 445, 604, 769, 967, 968
BseMII CTCAG 2 cut(s) 112, 929
BseNI ACTGG 3 cut(s) 32, 609, 684
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 1 cut(s) 522
BseYI CCCAGC 1 cut(s) 243
BshFI GGCC 3 cut(s) 418, 438, 643
BslI CCNNNNNNNGG 6 cut(s) 244, 445, 604, 769, 967, 968
BsmAI GTCTC 1 cut(s) 291
BsmI GAATGC 2 cut(s) 557, 852
BsnI GGCC 3 cut(s) 418, 438, 643
Bsp120I GGGCCC 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 2 cut(s) 730, 835
Bsp19I CCATGG 1 cut(s) 146
BspACI CCGC 5 cut(s) 45, 104, 238, 241, 594
BspANI GGCC 3 cut(s) 418, 438, 643
BspCNI CTCAG 2 cut(s) 111, 930
BspLI GGNNCC 2 cut(s) 418, 549
BsrBI CCGCTC 1 cut(s) 104
BsrI ACTGG 3 cut(s) 32, 609, 684
BssECI CCNNGG 2 cut(s) 146, 583
BssMI GATC 2 cut(s) 730, 835
BssT1I CCWWGG 2 cut(s) 146, 583
Bst2UI CCWGG 2 cut(s) 125, 658
Bst4CI ACNGT 2 cut(s) 368, 470
Bst6I CTCTTC 3 cut(s) 345, 386, 936
BstDEI CTNAG 2 cut(s) 98, 938
BstDSI CCRYGG 1 cut(s) 146
BstF5I GGATG 3 cut(s) 666, 833, 838
BstKTI GATC 2 cut(s) 733, 838
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 2 cut(s) 730, 835
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 2 cut(s) 125, 658
BstPAI GACNNNNGTC 1 cut(s) 652
BstSCI CCNGG 2 cut(s) 123, 656
BstSLI GKGCMC 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 522
BstV2I GAAGAC 1 cut(s) 160
BsuRI GGCC 3 cut(s) 418, 438, 643
BtgI CCRYGG 1 cut(s) 146
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 3 cut(s) 666, 833, 838
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 4 cut(s) 124, 475, 602, 691
CaiI CAGNNNCTG 1 cut(s) 474
Cfr13I GGNCC 5 cut(s) 127, 416, 417, 437, 548
CseI GACGC 1 cut(s) 657
Csp6I GTAC 1 cut(s) 369
CviAII CATG 3 cut(s) 147, 565, 975
CviJI RGCY 7 cut(s) 97, 291, 418, 438, 461, 643, 692
CviKI_1 RGCY 7 cut(s) 97, 291, 418, 438, 461, 643, 692
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 98, 938
DpnI GATC 2 cut(s) 732, 837
DpnII GATC 2 cut(s) 730, 835
Eam1104I CTCTTC 3 cut(s) 345, 386, 936
EarI CTCTTC 3 cut(s) 345, 386, 936
EciI GGCGGA 2 cut(s) 60, 583
Eco130I CCWWGG 2 cut(s) 146, 583
Eco24I GRGCYC 1 cut(s) 420
Eco47I GGWCC 2 cut(s) 127, 548
Eco57I CTGAAG 1 cut(s) 277
EcoO109I RGGNCCY 2 cut(s) 417, 437
EcoRII CCWGG 2 cut(s) 123, 656
EcoT14I CCWWGG 2 cut(s) 146, 583
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 2 cut(s) 146, 583
FaeI CATG 3 cut(s) 150, 568, 978
FaiI YATR 9 cut(s) 148, 321, 360, 501, 527, 566, 622, 723, 976
FatI CATG 3 cut(s) 146, 564, 974
Fnu4HI GCNGC 2 cut(s) 241, 536
FokI GGATG 3 cut(s) 673, 840, 845
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 2 cut(s) 241, 536
FspBI CTAG 2 cut(s) 693, 882
GluI GCNGC 2 cut(s) 241, 536
GsaI CCCAGC 1 cut(s) 247
HaeIII GGCC 3 cut(s) 418, 438, 643
HgaI GACGC 1 cut(s) 657
Hin1II CATG 3 cut(s) 150, 568, 978
HinfI GANTC 2 cut(s) 248, 901
HphI GGTGA 1 cut(s) 818
Hpy188I TCNGA 5 cut(s) 101, 296, 412, 424, 906
Hpy188III TCNNGA 6 cut(s) 130, 475, 734, 839, 870, 882
HpyCH4III ACNGT 2 cut(s) 368, 470
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 850, 953
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 2 cut(s) 98, 938
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 3 cut(s) 150, 568, 978
Kzo9I GATC 2 cut(s) 730, 835
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 1 cut(s) 522
MaeI CTAG 2 cut(s) 693, 882
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 362, 920
MalI GATC 2 cut(s) 732, 837
MbiI CCGCTC 1 cut(s) 104
MboI GATC 2 cut(s) 730, 835
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 2 cut(s) 58, 851
MlyI GAGTC 1 cut(s) 910
MmeI TCCRAC 1 cut(s) 884
MroXI GAANNNNTTC 1 cut(s) 264
MseI TTAA 3 cut(s) 24, 56, 699
MspA1I CMGCKG 1 cut(s) 243
MspR9I CCNGG 2 cut(s) 125, 658
Mva1269I GAATGC 2 cut(s) 557, 852
MvaI CCWGG 2 cut(s) 125, 658
MwoI GCNNNNNNNGC 1 cut(s) 240
NcoI CCATGG 1 cut(s) 146
NdeII GATC 2 cut(s) 730, 835
NlaIII CATG 3 cut(s) 150, 568, 978
NlaIV GGNNCC 2 cut(s) 418, 549
NmuCI GTSAC 1 cut(s) 920
PctI GAATGC 2 cut(s) 557, 852
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 248
PflFI GACNNNGTC 1 cut(s) 470
PfoI TCCNGGA 1 cut(s) 656
PkrI GCNGC 2 cut(s) 242, 537
PleI GAGTC 1 cut(s) 909
PpsI GAGTC 1 cut(s) 909
PshAI GACNNNNGTC 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 123, 656
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 2 cut(s) 123, 656
PspN4I GGNNCC 2 cut(s) 418, 549
PspOMI GGGCCC 1 cut(s) 416
PspPI GGNCC 5 cut(s) 127, 416, 417, 437, 548
PstNI CAGNNNCTG 1 cut(s) 474
PsyI GACNNNGTC 1 cut(s) 470
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 24, 56, 699
SatI GCNGC 2 cut(s) 241, 536
Sau3AI GATC 2 cut(s) 730, 835
Sau96I GGNCC 5 cut(s) 127, 416, 417, 437, 548
SchI GAGTC 1 cut(s) 910
ScrFI CCNGG 2 cut(s) 125, 658
SduI GDGCHC 1 cut(s) 420
SinI GGWCC 2 cut(s) 127, 548
Sse9I AATT 2 cut(s) 58, 851
SsiI CCGC 5 cut(s) 45, 104, 238, 241, 594
SspMI CTAG 2 cut(s) 693, 882
StyD4I CCNGG 2 cut(s) 123, 656
StyI CCWWGG 2 cut(s) 146, 583
TaaI ACNGT 2 cut(s) 368, 470
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 871
TasI AATT 2 cut(s) 58, 851
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 3 cut(s) 24, 56, 699
Tru9I TTAA 3 cut(s) 24, 56, 699
TscAI CASTG 4 cut(s) 124, 475, 609, 691
TseFI GTSAC 1 cut(s) 920
TseI GCWGC 1 cut(s) 535
Tsp45I GTSAC 1 cut(s) 920
TspDTI ATGAA 4 cut(s) 330, 336, 741, 963
TspRI CASTG 4 cut(s) 124, 475, 609, 691
Tth111I GACNNNGTC 1 cut(s) 470
VpaK11BI GGWCC 2 cut(s) 127, 548
XbaI TCTAGA 1 cut(s) 881
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 2 cut(s) 693, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.