Rh4DG061200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0010950
Physical Location & Seq
Reverse (-)
9190940 .. 9194552
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG061200.1

Sequence Viewer

Length: 876 bp
ATGGAGAGCAGTGTCCTGGTCCTCACACACCCTCATCCATGGCGACCCAGATATTCCCTTCACTCTCTTTTTCAAAACCCACGTCCTCCTTCCTCTCATCTACTTCGCTCTTATACTACTTGCTACCGCCGCTGGGATTCCAATGCCGAAACCATTCGCTCTAAAACATTTGGTTTTAGTTTCAGAGACAGACGAAACGGAGATGAAGATGACGATGACTATGAGGAAGAAGATGATTATGGTTACAATACAAGTAAAGGGAAGAAGAAGAAGAGGCGGTGGTGGTCAGATGGGCCCTCTGAGATGGAGGAAAAACCTGTTGGAGTCTTGGAGGAAGCCATTGACAGTGTCTGGATTTTCAAGGTGTTCAGATCTTATGGTTGGACATTACCATTTATTGTCATATCTCTGCTGCTATCTACGGGTCCAAAAGCTTTCCTCATGGCATTAGCACTTCCCCTTGGTCAGTCAGCCCTTTCACTGGCAATTGAGAAGCTATGGGGAAGGACGCAAAGAAGGCCAAAACGCAAGTCCAGGATGAGAAGGAAACCATCTGCAACCAGTGAAGCTAATGTTAAAATGGACGAAGAAGAAACATATGATGAAGATCAGGAAACTAATAATAAAAAGATGGATTACCAATCTTGGGTTGTTGGGAATGATGCTTCAGTTGGTAATAGTGGCGAAGATGCGTCAAAATTAGGTGGGTGGGATGATCTTGAAAGAATGGAATCTGAAAAGAGGCAATCTCGAAGAAAGTCTAGAGGGAAGGGTAAGTTGAGTCGGAGAGAGAGAATTAGTGATACACCTCTTCTGCTGAGGTTGTTGATTGCAGTTTTCCCTTTTTTGGGTTCATGGACAAAGATATTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.94

Weight (kDa)

9.4

Isoelectric Point (pI)

63.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33250 AT3G04310 AT3G04310
fragaria_vesca FvH4_4g05190 FvH4_4g05190
malus_domestica MD13G1225800.v1.1 MD16G1230800.v1.1
prunus_persica Prupe.1G052600_v2.0.a1
pyrus_communis pycom16g19270
rosa_chinensis RchiOBHm_Chr4g0396101
rosa_laevigata RLG00000009572
rosa_multiflora Rmu_sc0006325.1_g000019 Rmu_sc0007010.1_g000013 Rmu_sc0009634.1_g000010
rosa_roxburghii Rroxscaffold_5G00340900
rosa_rugosa Rorug03G0352600
rosa_samantha Rh4BG064200 Rh4CG070800 Rh4DG061200
rosa_wichuraiana Rw4G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 127, 130, 277
AcuI CTGAAG 1 cut(s) 651
AfiI CCNNNNNNNGG 5 cut(s) 133, 481, 646, 847, 848
AgsI TTSAA 3 cut(s) 74, 361, 722
AjiI CACGTC 1 cut(s) 83
AjnI CCWGG 2 cut(s) 15, 533
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 3 cut(s) 434, 496, 569
AluI AGCT 3 cut(s) 434, 496, 569
Alw26I GTCTC 1 cut(s) 180
AlwNI CAGNNNCTG 1 cut(s) 351
AoxI GGCC 2 cut(s) 293, 518
ApaI GGGCCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 412
ArsI GACNNNNNNTTYG 4 cut(s) 67, 99, 515, 547
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 4 cut(s) 19, 293, 294, 425
AvaII GGWCC 2 cut(s) 19, 425
BaeGI GKGCMC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 818
BbvI GCAGC 1 cut(s) 399
BccI CCATC 4 cut(s) 284, 298, 559, 625
BciT130I CCWGG 2 cut(s) 17, 535
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 762
BglII AGATCT 1 cut(s) 371
BisI GCNGC 2 cut(s) 130, 413
BlsI GCNGC 2 cut(s) 131, 414
Bme1390I CCNGG 2 cut(s) 17, 535
Bme18I GGWCC 2 cut(s) 19, 425
BmgBI CACGTC 1 cut(s) 83
BmgT120I GGNCC 4 cut(s) 19, 293, 294, 425
BmiI GGNNCC 2 cut(s) 295, 426
BmrFI CCNGG 2 cut(s) 17, 535
BmsI GCATC 2 cut(s) 652, 679
BplI GAGNNNNNCTC 2 cut(s) 733, 765
Bpu10I CCTNAGC 1 cut(s) 818
BsaBI GATNNNNATC 1 cut(s) 606
BsaJI CCNNGG 2 cut(s) 38, 460
Bsc4I CCNNNNNNNGG 5 cut(s) 133, 481, 646, 847, 848
Bse1I ACTGG 2 cut(s) 486, 561
Bse8I GATNNNNATC 1 cut(s) 606
BseBI CCWGG 2 cut(s) 17, 535
BseDI CCNNGG 2 cut(s) 38, 460
BseGI GGATG 3 cut(s) 34, 543, 718
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 5 cut(s) 133, 481, 646, 847, 848
BseMII CTCAG 2 cut(s) 291, 809
BseNI ACTGG 2 cut(s) 486, 561
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 1 cut(s) 399
BseYI CCCAGC 1 cut(s) 132
BshFI GGCC 2 cut(s) 295, 520
BslI CCNNNNNNNGG 5 cut(s) 133, 481, 646, 847, 848
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 2 cut(s) 295, 520
Bsp120I GGGCCC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 3 cut(s) 371, 607, 715
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 3 cut(s) 127, 130, 277
BspANI GGCC 2 cut(s) 295, 520
BspCNI CTCAG 2 cut(s) 292, 810
BspLI GGNNCC 2 cut(s) 295, 426
BsrI ACTGG 2 cut(s) 486, 561
BssECI CCNNGG 2 cut(s) 38, 460
BssMI GATC 3 cut(s) 371, 607, 715
BssT1I CCWWGG 2 cut(s) 38, 460
Bst2UI CCWGG 2 cut(s) 17, 535
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 2 cut(s) 266, 816
BstDEI CTNAG 2 cut(s) 300, 818
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 3 cut(s) 34, 543, 718
BstKTI GATC 3 cut(s) 374, 610, 718
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 371, 607, 715
BstMWI GCNNNNNNNGC 2 cut(s) 129, 517
BstNI CCWGG 2 cut(s) 17, 535
BstSCI CCNGG 2 cut(s) 15, 533
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BsuRI GGCC 2 cut(s) 295, 520
BtgI CCRYGG 1 cut(s) 38
BtrI CACGTC 1 cut(s) 83
BtsCI GGATG 3 cut(s) 34, 543, 718
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 4 cut(s) 16, 352, 479, 568
CaiI CAGNNNCTG 1 cut(s) 351
Cfr13I GGNCC 4 cut(s) 19, 293, 294, 425
CseI GACGC 2 cut(s) 517, 681
CviAII CATG 3 cut(s) 39, 442, 855
CviJI RGCY 7 cut(s) 295, 338, 434, 473, 496, 520, 569
CviKI_1 RGCY 7 cut(s) 295, 338, 434, 473, 496, 520, 569
DdeI CTNAG 2 cut(s) 300, 818
DpnI GATC 3 cut(s) 373, 609, 717
DpnII GATC 3 cut(s) 371, 607, 715
Eam1104I CTCTTC 2 cut(s) 266, 816
EarI CTCTTC 2 cut(s) 266, 816
Eco130I CCWWGG 2 cut(s) 38, 460
Eco24I GRGCYC 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 19, 425
Eco57I CTGAAG 1 cut(s) 651
EcoO109I RGGNCCY 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 15, 533
EcoT14I CCWWGG 2 cut(s) 38, 460
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 2 cut(s) 38, 460
FaeI CATG 3 cut(s) 42, 445, 858
FatI CATG 3 cut(s) 38, 441, 854
FauNDI CATATG 1 cut(s) 598
Fnu4HI GCNGC 2 cut(s) 130, 413
FokI GGATG 3 cut(s) 21, 550, 725
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 2 cut(s) 130, 413
FspBI CTAG 1 cut(s) 762
GluI GCNGC 2 cut(s) 130, 413
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 2 cut(s) 295, 520
HgaI GACGC 2 cut(s) 517, 681
Hin1II CATG 3 cut(s) 42, 445, 858
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 4 cut(s) 137, 324, 731, 781
Hpy188I TCNGA 6 cut(s) 185, 289, 301, 371, 736, 786
Hpy188III TCNNGA 5 cut(s) 352, 611, 719, 750, 762
HpyAV CCTTC 6 cut(s) 68, 99, 498, 510, 537, 763
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 557, 833
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 517
HpyF3I CTNAG 2 cut(s) 300, 818
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 3 cut(s) 42, 445, 858
Kzo9I GATC 3 cut(s) 371, 607, 715
Lsp1109I GCAGC 1 cut(s) 399
LweI GCATC 2 cut(s) 652, 679
MaeI CTAG 1 cut(s) 762
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 242
MalI GATC 3 cut(s) 373, 609, 717
MboI GATC 3 cut(s) 371, 607, 715
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 3 cut(s) 486, 698, 795
MlyI GAGTC 2 cut(s) 333, 790
MmeI TCCRAC 3 cut(s) 301, 362, 764
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 132
MspR9I CCNGG 2 cut(s) 17, 535
MunI CAATTG 1 cut(s) 486
MvaI CCWGG 2 cut(s) 17, 535
MwoI GCNNNNNNNGC 2 cut(s) 129, 517
NcoI CCATGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 598
NdeII GATC 3 cut(s) 371, 607, 715
NlaIII CATG 3 cut(s) 42, 445, 858
NlaIV GGNNCC 2 cut(s) 295, 426
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 137, 731
PflFI GACNNNGTC 1 cut(s) 347
PfoI TCCNGGA 1 cut(s) 533
PkrI GCNGC 2 cut(s) 131, 414
PleI GAGTC 2 cut(s) 332, 789
PpsI GAGTC 2 cut(s) 332, 789
Psp6I CCWGG 2 cut(s) 15, 533
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 2 cut(s) 15, 533
PspN4I GGNNCC 2 cut(s) 295, 426
PspOMI GGGCCC 1 cut(s) 293
PspPI GGNCC 4 cut(s) 19, 293, 294, 425
PstNI CAGNNNCTG 1 cut(s) 351
PsuI RGATCY 1 cut(s) 371
PsyI GACNNNGTC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 2 cut(s) 130, 413
Sau3AI GATC 3 cut(s) 371, 607, 715
Sau96I GGNCC 4 cut(s) 19, 293, 294, 425
SchI GAGTC 2 cut(s) 333, 790
ScrFI CCNGG 2 cut(s) 17, 535
SduI GDGCHC 1 cut(s) 297
SetI ASST 9 cut(s) 85, 319, 366, 436, 498, 571, 706, 811, 824
SfaNI GCATC 2 cut(s) 652, 679
SinI GGWCC 2 cut(s) 19, 425
Sse9I AATT 3 cut(s) 486, 698, 795
SsiI CCGC 3 cut(s) 127, 130, 277
SspMI CTAG 1 cut(s) 762
StyD4I CCNGG 2 cut(s) 15, 533
StyI CCWWGG 2 cut(s) 38, 460
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 751
TasI AATT 3 cut(s) 486, 698, 795
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 2 cut(s) 137, 731
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 4 cut(s) 16, 352, 486, 568
TseI GCWGC 1 cut(s) 412
TspDTI ATGAA 3 cut(s) 219, 618, 843
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 4 cut(s) 16, 352, 486, 568
Tth111I GACNNNGTC 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 19, 425
XbaI TCTAGA 1 cut(s) 761
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.