Prupe.1G052600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010950
Physical Location & Seq
Reverse (-)
3681818 .. 3683661
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G052600.1

Sequence Viewer

Length: 873 bp
ATGGAGAGCAGTGTCCTCCTTCTCACACAGCCTCATCCATGGCGACCCAAATATTCCTTTCACTCTCTCTTTCAAAACCCACTTCCTTCGTCTCAACCAAGTCGCTCCTACACTCCTAAGTACCGTCGTTGGGATTCCAATGCCGAAACCATTCGGTCCCAAAGATTCGGTTTTAATTTAAGAGACAAAGGCAACAAAGAAGAAGAAGAAGATGCTGATGGCGACGAAGAAGAAGAAGAAGACTACAATTACAATGGAAGTAAAGAGAAGAAGAAAAGGCGGTGGTGGTCAGATGATTACTCGGAGTCGGAGATGGAGGAAGGCTCTGGTGGAATCTTGGATGAAGCCATTGATAGTGTCTGGATTCTCAAGGTGTTCAGATCCTATGGTTGGGCATTTCCAGCTATTATCGTATCTTTGCTGCTGTCTACGGGTGCAAAAGCTTTCCTCATGGCTTTAGCATTCCCCCTTTGTCAGTCAGCATTTTCACTGGCATTTGAGAAGTTGTGGGGAGGAACACAAAGTAGGCCAAAACGTAAGTCCAAGACCAGGAGGAGAAGGAAACCATTTGCCAGCACTGTAGATAACGTTAAAATGGATGAAGAACAAGAAACTAGCAACAAAAAGATGGATTATCAATCTTGGGTAGTAGGCAATGATGTCTCAGTTGATAATAGTGGCCAAAATGCATCAGGTCTTGGTGGGTGGGATGATCTTGAAAGAACTGAATCTGCACGGAGGCAATCTCGAAGAAAGCCGATGGGGAAGGGTAAGTTGAGTAAGAGAGAAAGGAAAAGTGACACACCTCTGCTGTTTAGGTTGTTGATTGCTGTTTTTCCATTTTTGGGTTCATGGACAAAGATGTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.59

Weight (kDa)

9.2

Isoelectric Point (pI)

71.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33250 AT3G04310 AT3G04310
fragaria_vesca FvH4_4g05190 FvH4_4g05190
malus_domestica MD13G1225800.v1.1 MD16G1230800.v1.1
prunus_persica Prupe.1G052600_v2.0.a1
pyrus_communis pycom16g19270
rosa_chinensis RchiOBHm_Chr4g0396101
rosa_laevigata RLG00000009572
rosa_multiflora Rmu_sc0006325.1_g000019 Rmu_sc0007010.1_g000013 Rmu_sc0009634.1_g000010
rosa_roxburghii Rroxscaffold_5G00340900
rosa_rugosa Rorug03G0352600
rosa_samantha Rh4BG064200 Rh4CG070800 Rh4DG061200
rosa_wichuraiana Rw4G005330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 428
AciI CCGC 1 cut(s) 280
AclI AACGTT 1 cut(s) 588
AclWI GGATC 1 cut(s) 375
AcoI YGGCCR 1 cut(s) 679
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 4 cut(s) 130, 390, 549, 845
AgsI TTSAA 2 cut(s) 74, 719
AjnI CCWGG 1 cut(s) 548
AluBI AGCT 2 cut(s) 404, 443
AluI AGCT 2 cut(s) 404, 443
Alw26I GTCTC 3 cut(s) 96, 177, 667
AlwI GGATC 1 cut(s) 375
AoxI GGCC 2 cut(s) 527, 679
ApeKI GCWGC 1 cut(s) 421
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
Asp700I GAANNNNTTC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 156
AvaII GGWCC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 681
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 408
BccI CCATC 4 cut(s) 212, 307, 622, 754
BciT130I CCWGG 1 cut(s) 550
BcoDI GTCTC 3 cut(s) 96, 177, 667
BfaI CTAG 1 cut(s) 615
BfmI CTRYAG 1 cut(s) 579
BisI GCNGC 1 cut(s) 422
BlsI GCNGC 1 cut(s) 423
Bme1390I CCNGG 1 cut(s) 550
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 550
BmsI GCATC 2 cut(s) 202, 698
BpiI GAAGAC 1 cut(s) 246
BplI GAGNNNNNCTC 4 cut(s) 308, 340, 730, 762
BpuEI CTTGAG 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 390, 549, 845
Bse1I ACTGG 1 cut(s) 495
Bse3DI GCAATG 1 cut(s) 661
BseBI CCWGG 1 cut(s) 550
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 4 cut(s) 34, 346, 604, 715
BseLI CCNNNNNNNGG 4 cut(s) 130, 390, 549, 845
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 495
BseRI GAGGAG 1 cut(s) 568
BseXI GCAGC 1 cut(s) 408
BsgI GTGCAG 1 cut(s) 717
BshFI GGCC 2 cut(s) 529, 681
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 4 cut(s) 130, 390, 549, 845
BsmAI GTCTC 3 cut(s) 96, 177, 667
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 142
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 2 cut(s) 529, 681
Bsp143I GATC 2 cut(s) 380, 712
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 1 cut(s) 280
BspANI GGCC 2 cut(s) 529, 681
BspCNI CTCAG 1 cut(s) 677
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 661
BsrI ACTGG 1 cut(s) 495
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 2 cut(s) 380, 712
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 550
Bst4CI ACNGT 2 cut(s) 125, 580
BstC8I GCNNGC 1 cut(s) 574
BstDEI CTNAG 2 cut(s) 117, 664
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 4 cut(s) 34, 346, 604, 715
BstKTI GATC 2 cut(s) 383, 715
BstMAI GTCTC 3 cut(s) 96, 177, 667
BstMBI GATC 2 cut(s) 380, 712
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNI CCWGG 1 cut(s) 550
BstSCI CCNGG 1 cut(s) 548
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 1 cut(s) 408
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BsuRI GGCC 2 cut(s) 529, 681
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 4 cut(s) 34, 346, 604, 715
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 3 cut(s) 16, 488, 576
Cac8I GCNNGC 1 cut(s) 574
Cfr13I GGNCC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 121
CviAII CATG 3 cut(s) 39, 451, 852
CviJI RGCY 9 cut(s) 31, 324, 347, 404, 443, 455, 529, 681, 757
CviKI_1 RGCY 9 cut(s) 31, 324, 347, 404, 443, 455, 529, 681, 757
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 2 cut(s) 117, 664
DpnI GATC 2 cut(s) 382, 714
DpnII GATC 2 cut(s) 380, 712
EaeI YGGCCR 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 548
EcoT14I CCWWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 691
ErhI CCWWGG 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 3 cut(s) 42, 454, 855
FaiI YATR 4 cut(s) 40, 387, 452, 853
FaqI GGGAC 1 cut(s) 142
FatI CATG 3 cut(s) 38, 450, 851
FblI GTMKAC 1 cut(s) 428
Fnu4HI GCNGC 1 cut(s) 422
FokI GGATG 4 cut(s) 21, 353, 611, 722
Fsp4HI GCNGC 1 cut(s) 422
FspBI CTAG 1 cut(s) 615
GluI GCNGC 1 cut(s) 422
HaeIII GGCC 2 cut(s) 529, 681
Hin1II CATG 3 cut(s) 42, 454, 855
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 6 cut(s) 134, 165, 305, 333, 364, 728
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 4 cut(s) 292, 304, 310, 380
Hpy188III TCNNGA 3 cut(s) 361, 716, 747
Hpy8I GTNNAC 1 cut(s) 429
Hpy99I CGWCG 2 cut(s) 129, 227
HpyAV CCTTC 5 cut(s) 29, 96, 314, 552, 760
HpyCH4III ACNGT 2 cut(s) 125, 580
HpyCH4IV ACGT 2 cut(s) 535, 588
HpyCH4V TGCA 3 cut(s) 437, 689, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 2 cut(s) 117, 664
HpySE526I ACGT 2 cut(s) 535, 588
Hsp92II CATG 3 cut(s) 42, 454, 855
Kzo9I GATC 2 cut(s) 380, 712
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 8 cut(s) 312, 346, 414, 476, 535, 562, 586, 678
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 2 cut(s) 202, 698
MaeI CTAG 1 cut(s) 615
MaeII ACGT 2 cut(s) 535, 588
MaeIII GTNAC 1 cut(s) 797
MalI GATC 2 cut(s) 382, 714
MboI GATC 2 cut(s) 380, 712
MflI RGATCY 1 cut(s) 380
MlsI TGGCCA 1 cut(s) 681
MluCI AATT 2 cut(s) 175, 247
MluNI TGGCCA 1 cut(s) 681
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 8 cut(s) 26, 42, 310, 458, 506, 546, 732, 816
Mox20I TGGCCA 1 cut(s) 681
Mph1103I ATGCAT 1 cut(s) 691
MroXI GAANNNNTTC 1 cut(s) 150
MscI TGGCCA 1 cut(s) 681
MseI TTAA 3 cut(s) 174, 179, 591
Msp20I TGGCCA 1 cut(s) 681
MspR9I CCNGG 1 cut(s) 550
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 1 cut(s) 550
MwoI GCNNNNNNNGC 1 cut(s) 401
NcoI CCATGG 1 cut(s) 38
NdeII GATC 2 cut(s) 380, 712
NlaIII CATG 3 cut(s) 42, 454, 855
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 797
NsiI ATGCAT 1 cut(s) 691
PctI GAATGC 1 cut(s) 461
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 5 cut(s) 134, 165, 333, 364, 728
PkrI GCNGC 1 cut(s) 423
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Psp1406I AACGTT 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 548
PspGI CCWGG 1 cut(s) 548
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 380
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SaqAI TTAA 3 cut(s) 174, 179, 591
SatI GCNGC 1 cut(s) 422
Sau3AI GATC 2 cut(s) 380, 712
Sau96I GGNCC 1 cut(s) 156
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 550
SetI ASST 8 cut(s) 375, 406, 445, 538, 591, 697, 808, 821
SfaNI GCATC 2 cut(s) 202, 698
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 2 cut(s) 175, 247
SsiI CCGC 1 cut(s) 280
SspI AATATT 1 cut(s) 53
SspMI CTAG 1 cut(s) 615
StyD4I CCNGG 1 cut(s) 548
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 2 cut(s) 125, 580
TaiI ACGT 2 cut(s) 538, 591
TaqI TCGA 1 cut(s) 748
TaqII GACCGA 1 cut(s) 144
TasI AATT 2 cut(s) 175, 247
TfiI GAWTC 5 cut(s) 134, 165, 333, 364, 728
Tru1I TTAA 3 cut(s) 174, 179, 591
Tru9I TTAA 3 cut(s) 174, 179, 591
TscAI CASTG 3 cut(s) 16, 495, 583
TseFI GTSAC 1 cut(s) 797
TseI GCWGC 1 cut(s) 421
Tsp45I GTSAC 1 cut(s) 797
TspDTI ATGAA 3 cut(s) 357, 615, 840
TspGWI ACGGA 1 cut(s) 751
TspRI CASTG 3 cut(s) 16, 495, 583
VpaK11BI GGWCC 1 cut(s) 156
XmiI GTMKAC 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 615
Zsp2I ATGCAT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.