Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003102

Physical Location & Seq

Genomic Coordinates Forward (+)

1181706 .. 1186444

Gene Structure 4739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGACACTTGCTAGCGATTTTGGTTTTCCATCCGCTATATCTTCATCTTTTACAATTCTAGAAGAGAGATACCACAATAACTTTCCTAACACTTTGTGTGTTTCATCAGGACAGGAATCGATGAATAACAACCCCGTCCCCTGTCAGGTGTTTCCTCTGGTCTCTGGTGGTAGTTCTGGTGGGAATTTGTTTTCATCTTCTTCCGGATTCTGCAATGGTGTCTATGTTTCATCTTCCTCCCAGGCACGGCCATCTGTTTCTACCGTGCCAAGAGACAGAATTACTGTTGCTCACGTCTCTGGTGAAGGGCAGAGGCAGGAATGCCCTGTGGAAACACATTCCTTGCAATTGATCAATCAACCTCAAGAACAGAAAATTATGACTTGGTCTTCAGACCAGATTCGGGGCTTCTTCGATTTTCCTGTTCCAGATCCACAAGCAGCGAGCAGCAGAACTATGGTTTCATCCAAGGAAGTGCTTTCAAAATGCGAATGGCCAGACTGGGCGGATCAGTTGATCTCTGATGATAGTCTTGAACCAAATTGGTCGGAGCTTCTAGGTGATCCTAATGTACTCAATCTATATTCAAAGATAGAAACACAGTCTTCTGATATAGCAAGGCAAGAGATCGTCTTTAGAAATCAGCATCAGGTGGATCCATCAATGGAGCCGTTTAATGCCAAAAGCCCACCAGCTAGTTCAATGACATCTAAGCAAAGAATGCGTTGGACACCAGAACTTCATGAAGCATTTGTCGAAGCTATCAATCAGCTCGGTGGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGAAGCTCATCAATAGCCCTGGGTTGACCGTTTATCATGTCAAAAGCCATTTGCAGAAATACAGAACTGCAAGGTATAAACCAGAGCTTTCCAAAGATACAGAAGAACCTCTAGTAAAGAATTTGAAAACCATTGAAGATATCAAATCTCTTGACTTGAAGACGAGCATTGAAATCACTGAAGCTCTCCGGTTACAGATGAAAGTTCAAAAACAACTCCACGAGCAACTTGAGATCCAAAGATCACTGCAGTTACAAATCGAAGAACAAGGTCGGTATCTTCAGATGATGATTGAGAAACAACAGAAGATGCAAGAGAACAAAAAAGACTCTACTTCCTCATCATCAATGCCAGAAGCTGACCCTTCAGCTCCATCACCAAACCTTTCACAACCTTTCCTCCATAAAGCAACCAATTCAGAACCATCAATAACTCAGAAACTGCAGAATGGTTCTAGCACAATGGATCAAAGTGAATCTACTTCTGGGACTAGTAATAGAAAACGGGTTAGAGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

442

Amino Acids

49.4

Weight (kDa)

5.71

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	240 - 291	4.1e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04450 AT3G04450 AT3G04450 AT3G04450 AT5G29000 AT5G29000 AT5G29000 AT5G29000
fragaria_vesca	FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670
malus_domestica	MD04G1231600.v1.1 MD12G1249600.v1.1
prunus_persica	Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1
pyrus_communis	pycom04g20490 pycom12g22940
rosa_chinensis	RchiOBHm_Chr3g0449471
rosa_laevigata	RLG00000025828
rosa_multiflora	Rmu_sc0019012.1_g000004
rosa_roxburghii	Rroxscaffold_6G00427420
rosa_rugosa	Rorug02G0621100 Rorug02G0621200 Rorug02G0621300
rosa_samantha	Rh3AG018800 Rh3AG019400 Rh3BG019200 Rh3CG018100 Rh3DG019400
rosa_wichuraiana	Rw3G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	203
AciI	CCGC	2 cut(s)	33, 506
AclWI	GGATC	7 cut(s)	425, 516, 557, 650, 663, 1036, 1281
AcoI	YGGCCR	2 cut(s)	248, 494
AcsI	RAATTY	2 cut(s)	184, 928
AcuI	CTGAAG	4 cut(s)	375, 1008, 1073, 1158
AdeI	CACNNNGTG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	573
AfiI	CCNNNNNNNGG	3 cut(s)	145, 246, 403
AhlI	ACTAGT	1 cut(s)	1298
AjiI	CACGTC	1 cut(s)	295
AjnI	CCWGG	2 cut(s)	240, 826
AluBI	AGCT	9 cut(s)	553, 695, 761, 772, 814, 895, 992, 1166, 1178
AluI	AGCT	9 cut(s)	553, 695, 761, 772, 814, 895, 992, 1166, 1178
Alw26I	GTCTC	3 cut(s)	166, 267, 301
AlwI	GGATC	7 cut(s)	425, 516, 557, 650, 663, 1036, 1281
AlwNI	CAGNNNCTG	2 cut(s)	1166, 1249
Aor13HI	TCCGGA	1 cut(s)	203
AoxI	GGCC	2 cut(s)	248, 494
ApeKI	GCWGC	2 cut(s)	440, 447
ApoI	RAATTY	2 cut(s)	184, 928
AsuHPI	GGTGA	3 cut(s)	314, 572, 1176
AsuNHI	GCTAGC	1 cut(s)	11
AxyI	CCTNAGG	1 cut(s)	798
BalI	TGGCCA	1 cut(s)	496
BamHI	GGATCC	1 cut(s)	655
BauI	CACGAG	1 cut(s)	1028
BbsI	GAAGAC	3 cut(s)	381, 597, 974
BbvI	GCAGC	2 cut(s)	452, 459
BccI	CCATC	5 cut(s)	37, 259, 667, 1189, 1240
BceAI	ACGGC	2 cut(s)	263, 655
BciT130I	CCWGG	2 cut(s)	242, 828
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	3 cut(s)	166, 267, 301
BcuI	ACTAGT	1 cut(s)	1298
BfaI	CTAG	7 cut(s)	12, 59, 557, 696, 920, 1263, 1299
BfmI	CTRYAG	2 cut(s)	1055, 1250
BisI	GCNGC	2 cut(s)	441, 448
BlsI	GCNGC	2 cut(s)	442, 449
Bme1390I	CCNGG	2 cut(s)	242, 828
BmgBI	CACGTC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	657, 669
BmrFI	CCNGG	2 cut(s)	242, 828
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	2 cut(s)	655, 1107
BmtI	GCTAGC	1 cut(s)	15
BmuI	ACTGGG	1 cut(s)	511
BpiI	GAAGAC	3 cut(s)	381, 597, 974
BpuEI	CTTGAG	2 cut(s)	348, 1058
Bsa29I	ATCGAT	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	4 cut(s)	240, 468, 826, 827
BsaWI	WCCGGW	2 cut(s)	203, 996
BsaXI	ACNNNNNCTCC	2 cut(s)	1191, 1221
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 246, 403
Bse1I	ACTGG	1 cut(s)	506
Bse21I	CCTNAGG	1 cut(s)	798
Bse3DI	GCAATG	1 cut(s)	220
BseAI	TCCGGA	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	242, 828
BseCI	ATCGAT	1 cut(s)	119
BseDI	CCNNGG	4 cut(s)	240, 468, 826, 827
BseGI	GGATG	2 cut(s)	29, 464
BseLI	CCNNNNNNNGG	3 cut(s)	145, 246, 403
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	1256
BseNI	ACTGG	1 cut(s)	506
BseXI	GCAGC	2 cut(s)	452, 459
BshFI	GGCC	2 cut(s)	250, 496
BshVI	ATCGAT	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	204, 997
BslFI	GGGAC	2 cut(s)	122, 1309
BslI	CCNNNNNNNGG	3 cut(s)	145, 246, 403
BsmAI	GTCTC	3 cut(s)	166, 267, 301
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	122, 1309
BsmI	GAATGC	2 cut(s)	326, 726
BsnI	GGCC	2 cut(s)	250, 496
Bso31I	GGTCTC	1 cut(s)	166
Bsp13I	TCCGGA	1 cut(s)	203
BspACI	CCGC	2 cut(s)	33, 506
BspANI	GGCC	2 cut(s)	250, 496
BspCNI	CTCAG	1 cut(s)	1255
BspDI	ATCGAT	1 cut(s)	119
BspEI	TCCGGA	1 cut(s)	203
BspHI	TCATGA	1 cut(s)	742
BspLI	GGNNCC	2 cut(s)	657, 669
BspMAI	CTGCAG	2 cut(s)	1059, 1254
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	7 cut(s)	425, 516, 557, 650, 663, 1036, 1281
BspTNI	GGTCTC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	506
BssECI	CCNNGG	4 cut(s)	240, 468, 826, 827
BssSI	CACGAG	1 cut(s)	1028
BssT1I	CCWWGG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	1028
Bst2UI	CCWGG	2 cut(s)	242, 828
Bst4CI	ACNGT	4 cut(s)	265, 286, 603, 838
Bst6I	CTCTTC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	721
BstC8I	GCNNGC	2 cut(s)	13, 445
BstDEI	CTNAG	3 cut(s)	711, 798, 1242
BstF5I	GGATG	2 cut(s)	29, 464
BstMAI	GTCTC	3 cut(s)	166, 267, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	721
BstNI	CCWGG	2 cut(s)	242, 828
BstSCI	CCNGG	2 cut(s)	240, 826
BstSFI	CTRYAG	2 cut(s)	1055, 1250
BstV1I	GCAGC	2 cut(s)	452, 459
BstV2I	GAAGAC	3 cut(s)	381, 597, 974
BstX2I	RGATCY	3 cut(s)	430, 655, 1041
BstYI	RGATCY	3 cut(s)	430, 655, 1041
Bsu15I	ATCGAT	1 cut(s)	119
Bsu36I	CCTNAGG	1 cut(s)	798
BsuRI	GGCC	2 cut(s)	250, 496
BsuTUI	ATCGAT	1 cut(s)	119
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	29, 464
BtsI	GCAGTG	1 cut(s)	1052
BtsIMutI	CAGTG	2 cut(s)	984, 1052
Cac8I	GCNNGC	2 cut(s)	13, 445
CaiI	CAGNNNCTG	2 cut(s)	1166, 1249
CciI	TCATGA	1 cut(s)	742
ClaI	ATCGAT	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	572
CviAII	CATG	2 cut(s)	743, 845
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	3 cut(s)	711, 798, 1242
DraIII	CACNNNGTG	1 cut(s)	96
EaeI	YGGCCR	2 cut(s)	248, 494
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	166
Eco32I	GATATC	1 cut(s)	949
Eco57I	CTGAAG	4 cut(s)	375, 1008, 1073, 1158
Eco81I	CCTNAGG	1 cut(s)	798
EcoRII	CCWGG	2 cut(s)	240, 826
EcoRV	GATATC	1 cut(s)	949
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	2 cut(s)	746, 848
FaqI	GGGAC	2 cut(s)	122, 1309
FatI	CATG	2 cut(s)	742, 844
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	441, 448
FokI	GGATG	2 cut(s)	16, 451
Fsp4HI	GCNGC	2 cut(s)	441, 448
FspBI	CTAG	7 cut(s)	12, 59, 557, 696, 920, 1263, 1299
GluI	GCNGC	2 cut(s)	441, 448
HaeIII	GGCC	2 cut(s)	250, 496
HapII	CCGG	2 cut(s)	204, 997
Hin1II	CATG	2 cut(s)	746, 848
HincII	GTYRAC	1 cut(s)	834
HindII	GTYRAC	1 cut(s)	834
HinfI	GANTC	5 cut(s)	116, 207, 400, 1136, 1283
HpaII	CCGG	2 cut(s)	204, 997
HphI	GGTGA	3 cut(s)	314, 572, 1176
Hpy166II	GTNNAC	2 cut(s)	785, 834
Hpy188I	TCNGA	7 cut(s)	394, 523, 550, 610, 1092, 1228, 1245
Hpy188III	TCNNGA	8 cut(s)	59, 108, 204, 365, 428, 533, 743, 959
Hpy8I	GTNNAC	2 cut(s)	785, 834
HpyAV	CCTTC	2 cut(s)	299, 1182
HpyCH4III	ACNGT	4 cut(s)	265, 286, 603, 838
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	7 cut(s)	213, 346, 862, 878, 1057, 1120, 1252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	721
HpyF3I	CTNAG	3 cut(s)	711, 798, 1242
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	746, 848
Kpn2I	TCCGGA	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	351
LmnI	GCTCC	3 cut(s)	550, 667, 1183
Lsp1109I	GCAGC	2 cut(s)	452, 459
LweI	GCATC	2 cut(s)	655, 1107
MaeI	CTAG	7 cut(s)	12, 59, 557, 696, 920, 1263, 1299
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	2 cut(s)	999, 1059
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	3 cut(s)	430, 655, 1041
MlsI	TGGCCA	1 cut(s)	496
MluCI	AATT	8 cut(s)	54, 184, 279, 347, 375, 541, 928, 1222
MluNI	TGGCCA	1 cut(s)	496
MlyI	GAGTC	1 cut(s)	1130
MmeI	TCCRAC	2 cut(s)	528, 707
MnlI	CCTC	7 cut(s)	165, 247, 306, 372, 927, 1156, 1217
Mox20I	TGGCCA	1 cut(s)	496
MroI	TCCGGA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	496
MseI	TTAA	1 cut(s)	675
Msp20I	TGGCCA	1 cut(s)	496
MspI	CCGG	2 cut(s)	204, 997
MspR9I	CCNGG	2 cut(s)	242, 828
MunI	CAATTG	1 cut(s)	347
Mva1269I	GAATGC	2 cut(s)	326, 726
MvaI	CCWGG	2 cut(s)	242, 828
MwoI	GCNNNNNNNGC	1 cut(s)	721
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	746, 848
NlaIV	GGNNCC	2 cut(s)	657, 669
PagI	TCATGA	1 cut(s)	742
PasI	CCCWGGG	1 cut(s)	827
PctI	GAATGC	2 cut(s)	326, 726
PfeI	GAWTC	4 cut(s)	116, 207, 400, 1283
PflFI	GACNNNGTC	1 cut(s)	385
PkrI	GCNGC	2 cut(s)	442, 449
PleI	GAGTC	1 cut(s)	1130
PpsI	GAGTC	1 cut(s)	1130
Psp6I	CCWGG	2 cut(s)	240, 826
PspGI	CCWGG	2 cut(s)	240, 826
PspN4I	GGNNCC	2 cut(s)	657, 669
PstI	CTGCAG	2 cut(s)	1059, 1254
PstNI	CAGNNNCTG	2 cut(s)	1166, 1249
PsuI	RGATCY	3 cut(s)	430, 655, 1041
PsyI	GACNNNGTC	1 cut(s)	385
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	2 cut(s)	441, 448
SchI	GAGTC	1 cut(s)	1130
ScrFI	CCNGG	2 cut(s)	242, 828
SfaNI	GCATC	2 cut(s)	655, 1107
SfcI	CTRYAG	2 cut(s)	1055, 1250
SmlI	CTYRAG	2 cut(s)	363, 1037
SmoI	CTYRAG	2 cut(s)	363, 1037
SpeI	ACTAGT	1 cut(s)	1298
Sse9I	AATT	8 cut(s)	54, 184, 279, 347, 375, 541, 928, 1222
SsiI	CCGC	2 cut(s)	33, 506
SspMI	CTAG	7 cut(s)	12, 59, 557, 696, 920, 1263, 1299
StyD4I	CCNGG	2 cut(s)	240, 826
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	4 cut(s)	265, 286, 603, 838
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	4 cut(s)	119, 414, 756, 1068
TasI	AATT	8 cut(s)	54, 184, 279, 347, 375, 541, 928, 1222
TatI	WGTACW	1 cut(s)	571
TfiI	GAWTC	4 cut(s)	116, 207, 400, 1283
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	2 cut(s)	991, 1059
TseI	GCWGC	2 cut(s)	440, 447
TspDTI	ATGAA	9 cut(s)	33, 93, 137, 183, 219, 453, 731, 759, 1022
TspRI	CASTG	2 cut(s)	991, 1059
Tth111I	GACNNNGTC	1 cut(s)	385
XapI	RAATTY	2 cut(s)	184, 928
XbaI	TCTAGA	1 cut(s)	58
XspI	CTAG	7 cut(s)	12, 59, 557, 696, 920, 1263, 1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.