Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019012.1

Orthogroup ID

OG0003102

Physical Location & Seq

Genomic Coordinates Reverse (-)

9414 .. 12097

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019012.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atgtcttcagcatttccacatctccctgcccctcttgatgtcaattattccagattgccagattcttttcaggtttccgcacaaagagaaaagcctatgcattcaatgttaccacagtcttcttcccttgggaactcatttccatcatcgtccaggcttccctgtgacagtcagatttcttcagtttgccctcatgaaagacattcccaaatttctccaatcaataagttaccaagtggggaatcactgtcactgacccattcacagttacaatctacaccagtggctagttaccctgaacaaaataaagatatttcctggtgcccagattcaattcaggagtttctgcacttttctgaaaatctccctgatcaaaatggcctggtagatactagtactggtgtcataatgtctgatgatcatgctgaaaagactgattggtctgacttgtatccattaatttcttttgatggtcctctggatccgtattgggagctttcgattgatgatgtctctgcggtggatcccaaaccggaggtgttgaagcattcttctgatatcccggtgcagcagcccgatattcaacagcatcagccagtacaatctggagaaatttttactagccctgacccagtgtccactgcaccttcaaccaaagctagaatgcgttggacacaagaacttcatgaggcctttgttgaagctgtcaaccagcttggtggtagtgaaagagccactcctaagggtatcttaaacgtcatgaaggttgaaagcttgacaatctatcatgtaaaaagccatttacagaaatatagaacagccagatacaaaccagagtcatcagaaggaacttgtgagaagattccgactcctgttgaagaaatgaattctatagacttgaaaacgagcggtatggggattactgaagcattgcggttgcaggtagaactccagaagcagcttcatgaacaacttgagagtcaaagaaagttgcagttggaaattgaggaacaatcaaagtaccttgaaaagatgtttgagcaacaaaggaagatggaagacaacagggtcaagccgacatcatcaacgtcagatgagcataataaaataggaaccagcactcctgtggatgaaggttcacaagatgcaagtatgaaacagaaggcacaagaatctgaaactcatgagaatcatgatcctccaggcgatgccgattctggtgccgtccccacaaaacgagcaaggactggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

417

Amino Acids

46.52

Weight (kDa)

5.09

Isoelectric Point (pI)

60.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04450 AT3G04450 AT3G04450 AT3G04450 AT5G29000 AT5G29000 AT5G29000 AT5G29000
fragaria_vesca	FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670
malus_domestica	MD04G1231600.v1.1 MD12G1249600.v1.1
prunus_persica	Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1
pyrus_communis	pycom04g20490 pycom12g22940
rosa_chinensis	RchiOBHm_Chr3g0449471
rosa_laevigata	RLG00000025828
rosa_multiflora	Rmu_sc0019012.1_g000004
rosa_roxburghii	Rroxscaffold_6G00427420
rosa_rugosa	Rorug02G0621100 Rorug02G0621200 Rorug02G0621300
rosa_samantha	Rh3AG018800 Rh3AG019400 Rh3BG019200 Rh3CG018100 Rh3DG019400
rosa_wichuraiana	Rw3G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	439, 1067
Acc36I	ACCTGC	1 cut(s)	931
AccB1I	GGYRCC	2 cut(s)	321, 1220
AccBSI	CCGCTC	1 cut(s)	909
AciI	CCGC	4 cut(s)	78, 518, 909, 934
AclWI	GGATC	5 cut(s)	476, 489, 518, 531, 1190
AcsI	RAATTY	3 cut(s)	210, 612, 886
AcuI	CTGAAG	2 cut(s)	165, 945
AfaI	GTAC	3 cut(s)	397, 600, 1022
AhdI	GACNNNNNGTC	1 cut(s)	634
AhlI	ACTAGT	1 cut(s)	392
AjnI	CCWGG	4 cut(s)	152, 317, 381, 1201
AleI	CACNNNNGTG	1 cut(s)	1124
AloI	GAACNNNNNNTCC	2 cut(s)	1105, 1137
AluBI	AGCT	6 cut(s)	496, 659, 704, 715, 774, 961
AluI	AGCT	6 cut(s)	496, 659, 704, 715, 774, 961
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	5 cut(s)	476, 489, 518, 531, 1190
AoxI	GGCC	2 cut(s)	379, 690
ApeKI	GCWGC	3 cut(s)	568, 571, 958
ApoI	RAATTY	3 cut(s)	210, 612, 886
AseI	ATTAAT	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	473
AsuC2I	CCSGG	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	473
AxyI	CCTNAGG	1 cut(s)	741
BaeGI	GKGCMC	1 cut(s)	326
BamHI	GGATCC	2 cut(s)	481, 523
BanI	GGYRCC	2 cut(s)	321, 1220
BbsI	GAAGAC	2 cut(s)	111, 1065
BbvI	GCAGC	3 cut(s)	580, 583, 970
BccI	CCATC	3 cut(s)	151, 464, 1048
BceAI	ACGGC	1 cut(s)	1208
BcgI	CGANNNNNNTGC	2 cut(s)	1202, 1236
BciT130I	CCWGG	4 cut(s)	154, 319, 383, 1203
BciVI	GTATCC	1 cut(s)	462
BclI	TGATCA	2 cut(s)	370, 418
BcnI	CCSGG	1 cut(s)	563
BcoDI	GTCTC	1 cut(s)	517
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	4 cut(s)	288, 393, 621, 660
BfmI	CTRYAG	1 cut(s)	891
BfuAI	ACCTGC	1 cut(s)	931
BfuI	GTATCC	1 cut(s)	462
BisI	GCNGC	3 cut(s)	569, 572, 959
BlsI	GCNGC	3 cut(s)	570, 573, 960
BmcAI	AGTACT	1 cut(s)	397
Bme1390I	CCNGG	5 cut(s)	154, 319, 383, 563, 1203
Bme18I	GGWCC	1 cut(s)	473
BmeRI	GACNNNNNGTC	1 cut(s)	634
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	5 cut(s)	323, 483, 525, 1114, 1222
BmrFI	CCNGG	5 cut(s)	154, 319, 383, 563, 1203
BmrI	ACTGGG	1 cut(s)	626
BmsI	GCATC	3 cut(s)	598, 1135, 1198
BmuI	ACTGGG	1 cut(s)	626
BpiI	GAAGAC	2 cut(s)	111, 1065
BpmI	CTGGAG	3 cut(s)	627, 935, 1185
BpuEI	CTTGAG	1 cut(s)	995
BpuMI	CCSGG	1 cut(s)	563
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	532
BsaXI	ACNNNNNCTCC	2 cut(s)	1105, 1135
Bse1I	ACTGG	5 cut(s)	281, 403, 596, 632, 1252
Bse21I	CCTNAGG	1 cut(s)	741
Bse3DI	GCAATG	1 cut(s)	929
BseBI	CCWGG	4 cut(s)	154, 319, 383, 1203
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	1135
BseMI	GCAATG	1 cut(s)	929
BseNI	ACTGG	5 cut(s)	281, 403, 596, 632, 1252
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	3 cut(s)	580, 583, 970
BsgI	GTGCAG	3 cut(s)	332, 587, 627
BshFI	GGCC	2 cut(s)	381, 692
BshNI	GGYRCC	2 cut(s)	321, 1220
BsiSI	CCGG	2 cut(s)	533, 563
BslFI	GGGAC	1 cut(s)	1211
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	1 cut(s)	1211
BsmI	GAATGC	3 cut(s)	100, 547, 669
BsnI	GGCC	2 cut(s)	381, 692
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	5 cut(s)	370, 418, 481, 523, 1195
BspACI	CCGC	4 cut(s)	78, 518, 909, 934
BspANI	GGCC	2 cut(s)	381, 692
BspHI	TCATGA	6 cut(s)	193, 685, 759, 964, 1183, 1192
BspLI	GGNNCC	5 cut(s)	323, 483, 525, 1114, 1222
BspMI	ACCTGC	1 cut(s)	931
BspPI	GGATC	5 cut(s)	476, 489, 518, 531, 1190
BspT107I	GGYRCC	2 cut(s)	321, 1220
BsrBI	CCGCTC	1 cut(s)	909
BsrDI	GCAATG	1 cut(s)	929
BsrI	ACTGG	5 cut(s)	281, 403, 596, 632, 1252
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	5 cut(s)	370, 418, 481, 523, 1195
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	4 cut(s)	154, 319, 383, 1203
Bst4CI	ACNGT	4 cut(s)	117, 170, 249, 267
BstDEI	CTNAG	1 cut(s)	741
BstF5I	GGATG	1 cut(s)	1135
BstKTI	GATC	5 cut(s)	373, 421, 484, 526, 1198
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	5 cut(s)	370, 418, 481, 523, 1195
BstNI	CCWGG	4 cut(s)	154, 319, 383, 1203
BstSCI	CCNGG	5 cut(s)	152, 317, 381, 561, 1201
BstSFI	CTRYAG	1 cut(s)	891
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	580, 583, 970
BstV2I	GAAGAC	2 cut(s)	111, 1065
BstX2I	RGATCY	2 cut(s)	481, 523
BstXI	CCANNNNNNTGG	1 cut(s)	719
BstYI	RGATCY	2 cut(s)	481, 523
Bsu36I	CCTNAGG	1 cut(s)	741
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	381, 692
BtgZI	GCGATG	1 cut(s)	1221
BtsCI	GGATG	1 cut(s)	1135
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	5 cut(s)	245, 251, 288, 639, 639
BveI	ACCTGC	1 cut(s)	931
CciI	TCATGA	6 cut(s)	193, 685, 759, 964, 1183, 1192
Cfr13I	GGNCC	1 cut(s)	473
Csp6I	GTAC	3 cut(s)	396, 599, 1021
CviAII	CATG	8 cut(s)	194, 422, 686, 760, 788, 965, 1184, 1193
CviQI	GTAC	3 cut(s)	396, 599, 1021
DdeI	CTNAG	1 cut(s)	741
DpnI	GATC	5 cut(s)	372, 420, 483, 525, 1197
DpnII	GATC	5 cut(s)	370, 418, 481, 523, 1195
DrdI	GACNNNNNNGTC	2 cut(s)	439, 1067
DriI	GACNNNNNGTC	1 cut(s)	634
DseDI	GACNNNNNNGTC	2 cut(s)	439, 1067
Eam1105I	GACNNNNNGTC	1 cut(s)	634
Eco130I	CCWWGG	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	692
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	165, 945
Eco81I	CCTNAGG	1 cut(s)	741
EcoRI	GAATTC	1 cut(s)	886
EcoRII	CCWGG	4 cut(s)	152, 317, 381, 1201
EcoRV	GATATC	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	8 cut(s)	197, 425, 689, 763, 791, 968, 1187, 1196
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FaqI	GGGAC	1 cut(s)	1211
FatI	CATG	8 cut(s)	193, 421, 685, 759, 787, 964, 1183, 1192
FbaI	TGATCA	2 cut(s)	370, 418
Fnu4HI	GCNGC	3 cut(s)	569, 572, 959
FokI	GGATG	1 cut(s)	1142
Fsp4HI	GCNGC	3 cut(s)	569, 572, 959
FspBI	CTAG	4 cut(s)	288, 393, 621, 660
GluI	GCNGC	3 cut(s)	569, 572, 959
GsuI	CTGGAG	3 cut(s)	627, 935, 1185
HaeIII	GGCC	2 cut(s)	381, 692
HapII	CCGG	2 cut(s)	533, 563
Hin1II	CATG	8 cut(s)	197, 425, 689, 763, 791, 968, 1187, 1196
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HindIII	AAGCTT	1 cut(s)	772
HpaII	CCGG	2 cut(s)	533, 563
Hpy166II	GTNNAC	3 cut(s)	639, 709, 1139
Hpy188I	TCNGA	9 cut(s)	174, 358, 415, 445, 556, 844, 867, 1093, 1177
Hpy8I	GTNNAC	3 cut(s)	639, 709, 1139
HpyAV	CCTTC	5 cut(s)	657, 757, 839, 1127, 1156
HpyCH4III	ACNGT	4 cut(s)	117, 170, 249, 267
HpyCH4IV	ACGT	2 cut(s)	756, 1088
HpyCH4V	TGCA	7 cut(s)	100, 349, 568, 644, 940, 994, 1148
HpyF3I	CTNAG	1 cut(s)	741
HpySE526I	ACGT	2 cut(s)	756, 1088
Hsp92II	CATG	8 cut(s)	197, 425, 689, 763, 791, 968, 1187, 1196
Ksp22I	TGATCA	2 cut(s)	370, 418
Kzo9I	GATC	5 cut(s)	370, 418, 481, 523, 1195
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	3 cut(s)	580, 583, 970
LweI	GCATC	3 cut(s)	598, 1135, 1198
MaeI	CTAG	4 cut(s)	288, 393, 621, 660
MaeII	ACGT	2 cut(s)	756, 1088
MaeIII	GTNAC	6 cut(s)	108, 164, 228, 249, 267, 290
MalI	GATC	5 cut(s)	372, 420, 483, 525, 1197
MbiI	CCGCTC	1 cut(s)	909
MboI	GATC	5 cut(s)	370, 418, 481, 523, 1195
MboII	GAAGA	8 cut(s)	111, 114, 171, 543, 871, 890, 1063, 1070
MflI	RGATCY	2 cut(s)	481, 523
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	7 cut(s)	43, 210, 333, 459, 612, 886, 1002
MlyI	GAGTC	3 cut(s)	845, 862, 988
MmeI	TCCRAC	3 cut(s)	650, 890, 978
MnlI	CCTC	7 cut(s)	42, 201, 486, 529, 682, 1000, 1209
Mph1103I	ATGCAT	1 cut(s)	102
MseI	TTAA	2 cut(s)	458, 752
MslI	CAYNNNNRTG	1 cut(s)	1124
MspI	CCGG	2 cut(s)	533, 563
MspR9I	CCNGG	5 cut(s)	154, 319, 383, 563, 1203
Mva1269I	GAATGC	3 cut(s)	100, 547, 669
MvaI	CCWGG	4 cut(s)	154, 319, 383, 1203
NciI	CCSGG	1 cut(s)	563
NdeII	GATC	5 cut(s)	370, 418, 481, 523, 1195
NlaIII	CATG	8 cut(s)	197, 425, 689, 763, 791, 968, 1187, 1196
NlaIV	GGNNCC	5 cut(s)	323, 483, 525, 1114, 1222
NmuCI	GTSAC	2 cut(s)	164, 249
NsiI	ATGCAT	1 cut(s)	102
OliI	CACNNNNGTG	1 cut(s)	1124
PagI	TCATGA	6 cut(s)	193, 685, 759, 964, 1183, 1192
PceI	AGGCCT	1 cut(s)	692
PctI	GAATGC	3 cut(s)	100, 547, 669
PfeI	GAWTC	7 cut(s)	62, 242, 329, 862, 1172, 1189, 1214
PkrI	GCNGC	3 cut(s)	570, 573, 960
PleI	GAGTC	3 cut(s)	844, 862, 987
PpsI	GAGTC	3 cut(s)	844, 862, 987
PshBI	ATTAAT	1 cut(s)	458
Psp6I	CCWGG	4 cut(s)	152, 317, 381, 1201
PspGI	CCWGG	4 cut(s)	152, 317, 381, 1201
PspN4I	GGNNCC	5 cut(s)	323, 483, 525, 1114, 1222
PspPI	GGNCC	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	481, 523
RsaI	GTAC	3 cut(s)	397, 600, 1022
RsaNI	GTAC	3 cut(s)	396, 599, 1021
RseI	CAYNNNNRTG	1 cut(s)	1124
SaqAI	TTAA	2 cut(s)	458, 752
SatI	GCNGC	3 cut(s)	569, 572, 959
Sau3AI	GATC	5 cut(s)	370, 418, 481, 523, 1195
Sau96I	GGNCC	1 cut(s)	473
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	3 cut(s)	845, 862, 988
ScrFI	CCNGG	5 cut(s)	154, 319, 383, 563, 1203
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	3 cut(s)	598, 1135, 1198
SfcI	CTRYAG	1 cut(s)	891
SinI	GGWCC	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	1124
SmlI	CTYRAG	1 cut(s)	974
SmoI	CTYRAG	1 cut(s)	974
SpeI	ACTAGT	1 cut(s)	392
Sse9I	AATT	7 cut(s)	43, 210, 333, 459, 612, 886, 1002
SseBI	AGGCCT	1 cut(s)	692
SsiI	CCGC	4 cut(s)	78, 518, 909, 934
SspMI	CTAG	4 cut(s)	288, 393, 621, 660
StuI	AGGCCT	1 cut(s)	692
StyD4I	CCNGG	5 cut(s)	152, 317, 381, 561, 1201
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	4 cut(s)	117, 170, 249, 267
TaiI	ACGT	2 cut(s)	759, 1091
TaqI	TCGA	1 cut(s)	500
TasI	AATT	7 cut(s)	43, 210, 333, 459, 612, 886, 1002
TatI	WGTACW	2 cut(s)	395, 598
TfiI	GAWTC	7 cut(s)	62, 242, 329, 862, 1172, 1189, 1214
Tru1I	TTAA	2 cut(s)	458, 752
Tru9I	TTAA	2 cut(s)	458, 752
TscAI	CASTG	5 cut(s)	252, 258, 288, 639, 646
TseFI	GTSAC	2 cut(s)	164, 249
TseI	GCWGC	3 cut(s)	568, 571, 958
Tsp45I	GTSAC	2 cut(s)	164, 249
TspDTI	ATGAA	8 cut(s)	210, 674, 776, 899, 953, 981, 1146, 1169
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	5 cut(s)	252, 258, 288, 639, 646
VpaK11BI	GGWCC	1 cut(s)	473
VspI	ATTAAT	1 cut(s)	458
XapI	RAATTY	3 cut(s)	210, 612, 886
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1123
XspI	CTAG	4 cut(s)	288, 393, 621, 660
ZrmI	AGTACT	1 cut(s)	397
Zsp2I	ATGCAT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.