Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003102

Physical Location & Seq

Genomic Coordinates Reverse (-)

73823205 .. 73824849

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0621300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGATGACGGAGAGAGGCTCGATCGAGATTAGAGAAGAGGAAGAGGGTGTTATAGCAGCAAATCGAACTGTGAAAGGGAAGGGGAATCTGGAAGAGAAAGTGCTCTCCAATATTGAAGCCAAGTTTAGAAATCCATCATCGACTCACACTTGTATTTTCAGAATTTCTGACCGTATGAAGAAGGTTAATGAAACGGAGTTCGTTCCAAGATTAGTTTCAATCGGACCACTCCACCATTGCAAGAAGAGCCTTCAAGCCATGGAAGCAATTAAGTATTTGTACTTGCACAACCTCCTTCAAAAAGCCAGTTGCCGGACCAACTTGAAACACATGGTCGAACTAGTTACAAGTATGGAAGAATATTGTCGCGATTGCTATGATGAAAATCTAGATCTCAGTAGCGAAGCATTTGTGGAAATGATGGTTATTGATGGTTGCTTTATTATTGAATTCTATCGCGGAATGGCAGGAGAGTTTTTCACCATGGAAAATATGCTTCTGCATGCAATCGAAGGCCCAGACTTCCCTCGGTCAGTAGCTGCATCTGACTTGCTTCTACTAGAAAACCAGCTGCCTTGGGGAGTTGTTGAATGTTTATTCGAACTCACAAAGGAACCCAATCAAGAACGTTCTTGCAACTATCTGACAGAGCTTTGTGGTAGAGTGTGGAGGGATCCGGTTGAGACTGTAGTTTGTGGTAGACCGCTTGGGATTGTAGAGGAGAAATCGAGAAGCCGACATCTACTTGACACTTGGCGACTCTTCTCATCTGGACCAGACCACATATGTGAAGTTTATTCATGGCTCTCGCTCCCTTCTTCTGCAACGGAGCTTTTGCAAATTGGAGTGAAATTCAGAAGAAGACGGAGTGATGACAATATCCTTATCGTAACCTTCGTGAACGAAGTAATGGAGATTTCACCGATATTTGGGAAACCTTTCCATCTACTGAGAAACCTCGTCTCCATGGAAGAGTGCGATTCGACAGGTCCCCATCAGTATAAGATTACCTCTTATTGCAGGATCATGAATGATCTTATTAAGTCAACCAAAGATGTGGAGCTTCTCATTGAAAAAGGCATTCTTCTGAGGGTCGGCATCAATAATGAGGAGTTGGCTGGTTTCTTTAATGACATTTGCAACAATACTGTCACAACCTCCTCTTATTCTGCGTCATTTGTTGAAATTTCCAGAAGTGTGTGGCTGTATTATAAGAGGCATTGGGTATGGAGATGGATAGCATGGATCAAGCATGACTATTTGCACAATCCATCATCAATATGGTCGGTTTCTAATGCAGTGGTTCTTGTTATAATTCTCACTGCCATACGGACTATATATTCAGTTCTCTCTTACTACAAGTCGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

456

Amino Acids

52.66

Weight (kDa)

5.96

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	52 - 438	4.5e-87	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04450 AT3G04450 AT3G04450 AT3G04450 AT5G29000 AT5G29000 AT5G29000 AT5G29000
fragaria_vesca	FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670
malus_domestica	MD04G1231600.v1.1 MD12G1249600.v1.1
prunus_persica	Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1
pyrus_communis	pycom04g20490 pycom12g22940
rosa_chinensis	RchiOBHm_Chr3g0449471
rosa_laevigata	RLG00000025828
rosa_multiflora	Rmu_sc0019012.1_g000004
rosa_roxburghii	Rroxscaffold_6G00427420
rosa_rugosa	Rorug02G0621100 Rorug02G0621200 Rorug02G0621300
rosa_samantha	Rh3AG018800 Rh3AG019400 Rh3BG019200 Rh3CG018100 Rh3DG019400
rosa_wichuraiana	Rw3G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1212, 1313
AccI	GTMKAC	2 cut(s)	700, 1364
AccII	CGCG	2 cut(s)	369, 459
AciI	CCGC	2 cut(s)	459, 704
AclI	AACGTT	1 cut(s)	628
AclWI	GGATC	4 cut(s)	668, 681, 1031, 1253
AcsI	RAATTY	4 cut(s)	162, 449, 851, 1185
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	312, 929
AgsI	TTSAA	9 cut(s)	116, 219, 254, 299, 325, 449, 590, 1073, 1184
AhlI	ACTAGT	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AleI	CACNNNNGTG	1 cut(s)	786
AluBI	AGCT	5 cut(s)	539, 571, 652, 832, 1063
AluI	AGCT	5 cut(s)	539, 571, 652, 832, 1063
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	677, 967
AlwI	GGATC	4 cut(s)	668, 681, 1031, 1253
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	3 cut(s)	56, 539, 571
ApoI	RAATTY	4 cut(s)	162, 449, 851, 1185
Asp700I	GAANNNNTTC	1 cut(s)	938
AspS9I	GGNCC	5 cut(s)	224, 315, 515, 773, 989
AsuHPI	GGTGA	2 cut(s)	472, 912
AsuII	TTCGAA	1 cut(s)	600
AvaII	GGWCC	4 cut(s)	224, 315, 773, 989
BamHI	GGATCC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	868
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	68, 526, 558
BccI	CCATC	7 cut(s)	142, 415, 425, 951, 1002, 1227, 1279
BcoDI	GTCTC	2 cut(s)	677, 967
BcuI	ACTAGT	1 cut(s)	340
BfaI	CTAG	4 cut(s)	341, 389, 560, 1369
BfmI	CTRYAG	1 cut(s)	687
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	3 cut(s)	57, 540, 572
BlsI	GCNGC	3 cut(s)	58, 541, 573
Bme18I	GGWCC	4 cut(s)	224, 315, 773, 989
BmgT120I	GGNCC	5 cut(s)	224, 315, 515, 773, 989
BmiI	GGNNCC	3 cut(s)	615, 675, 991
BmsI	GCATC	2 cut(s)	551, 1107
BpiI	GAAGAC	1 cut(s)	868
BplI	GAGNNNNNCTC	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	5 cut(s)	258, 483, 527, 575, 966
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	2 cut(s)	947, 977
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 929
Bse1I	ACTGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	384
BseDI	CCNNGG	5 cut(s)	258, 483, 527, 575, 966
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	312, 929
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	3 cut(s)	409, 941, 1079
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	3 cut(s)	734, 1124, 1150
BseXI	GCAGC	3 cut(s)	68, 526, 558
Bsh1236I	CGCG	2 cut(s)	369, 459
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	516
BsiEI	CGRYCG	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	313, 677
BslFI	GGGAC	1 cut(s)	975
BslI	CCNNNNNNNGG	2 cut(s)	312, 929
BsmAI	GTCTC	2 cut(s)	677, 967
BsmBI	CGTCTC	1 cut(s)	967
BsmFI	GGGAC	1 cut(s)	975
BsmI	GAATGC	1 cut(s)	1080
BsnI	GGCC	1 cut(s)	516
Bsp119I	TTCGAA	1 cut(s)	600
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	6 cut(s)	21, 391, 673, 1023, 1033, 1245
Bsp19I	CCATGG	3 cut(s)	258, 483, 966
Bsp68I	TCGCGA	1 cut(s)	369
BspACI	CCGC	2 cut(s)	459, 704
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	3 cut(s)	408, 942, 1080
BspFNI	CGCG	2 cut(s)	369, 459
BspHI	TCATGA	1 cut(s)	1026
BspLI	GGNNCC	3 cut(s)	615, 675, 991
BspPI	GGATC	4 cut(s)	668, 681, 1031, 1253
BspQI	GCTCTTC	1 cut(s)	239
BspT104I	TTCGAA	1 cut(s)	600
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	5 cut(s)	258, 483, 527, 575, 966
BssMI	GATC	6 cut(s)	21, 391, 673, 1023, 1033, 1245
BssT1I	CCWWGG	4 cut(s)	258, 483, 575, 966
Bst4CI	ACNGT	4 cut(s)	70, 173, 688, 1150
Bst6I	CTCTTC	6 cut(s)	30, 36, 87, 239, 767, 966
BstBI	TTCGAA	1 cut(s)	600
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	3 cut(s)	395, 950, 1088
BstDSI	CCRYGG	3 cut(s)	258, 483, 966
BstFNI	CGCG	2 cut(s)	369, 459
BstKTI	GATC	6 cut(s)	24, 394, 676, 1026, 1036, 1248
BstMAI	GTCTC	2 cut(s)	677, 967
BstMBI	GATC	6 cut(s)	21, 391, 673, 1023, 1033, 1245
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 263
BstNSI	RCATGY	1 cut(s)	506
BstSFI	CTRYAG	1 cut(s)	687
BstUI	CGCG	2 cut(s)	369, 459
BstV1I	GCAGC	3 cut(s)	68, 526, 558
BstV2I	GAAGAC	1 cut(s)	868
BstX2I	RGATCY	2 cut(s)	391, 673
BstXI	CCANNNNNNTGG	1 cut(s)	1057
BstYI	RGATCY	2 cut(s)	391, 673
BsuRI	GGCC	1 cut(s)	516
BtgI	CCRYGG	3 cut(s)	258, 483, 966
BtsI	GCAGTG	2 cut(s)	1305, 1320
BtsIMutI	CAGTG	2 cut(s)	1305, 1320
BtuMI	TCGCGA	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	504
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	1026
Cfr13I	GGNCC	5 cut(s)	224, 315, 515, 773, 989
CseI	GACGC	1 cut(s)	1161
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	9 cut(s)	259, 331, 484, 503, 801, 967, 1027, 1242, 1253
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	3 cut(s)	395, 950, 1088
DpnI	GATC	6 cut(s)	23, 393, 675, 1025, 1035, 1247
DpnII	GATC	6 cut(s)	21, 391, 673, 1023, 1033, 1245
Eam1104I	CTCTTC	6 cut(s)	30, 36, 87, 239, 767, 966
EarI	CTCTTC	6 cut(s)	30, 36, 87, 239, 767, 966
Eco130I	CCWWGG	4 cut(s)	258, 483, 575, 966
Eco47I	GGWCC	4 cut(s)	224, 315, 773, 989
EcoO109I	RGGNCCY	1 cut(s)	989
EcoRI	GAATTC	1 cut(s)	449
EcoT14I	CCWWGG	4 cut(s)	258, 483, 575, 966
ErhI	CCWWGG	4 cut(s)	258, 483, 575, 966
Esp3I	CGTCTC	1 cut(s)	967
FaeI	CATG	9 cut(s)	262, 334, 487, 506, 804, 970, 1030, 1245, 1256
FalI	AAGNNNNNCTT	2 cut(s)	1068, 1100
FaqI	GGGAC	1 cut(s)	975
FatI	CATG	9 cut(s)	258, 330, 483, 502, 800, 966, 1026, 1241, 1252
FauNDI	CATATG	1 cut(s)	785
FblI	GTMKAC	2 cut(s)	700, 1364
Fnu4HI	GCNGC	3 cut(s)	57, 540, 572
Fsp4HI	GCNGC	3 cut(s)	57, 540, 572
FspBI	CTAG	4 cut(s)	341, 389, 560, 1369
GluI	GCNGC	3 cut(s)	57, 540, 572
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	2 cut(s)	313, 677
HgaI	GACGC	1 cut(s)	1161
Hin1II	CATG	9 cut(s)	262, 334, 487, 506, 804, 970, 1030, 1245, 1256
HincII	GTYRAC	2 cut(s)	1047, 1365
HindII	GTYRAC	2 cut(s)	1047, 1365
HinfI	GANTC	4 cut(s)	85, 142, 759, 980
HpaII	CCGG	2 cut(s)	313, 677
HphI	GGTGA	2 cut(s)	472, 912
Hpy166II	GTNNAC	4 cut(s)	701, 901, 1047, 1365
Hpy188I	TCNGA	7 cut(s)	161, 169, 224, 547, 645, 857, 1089
Hpy8I	GTNNAC	4 cut(s)	701, 901, 1047, 1365
HpyAV	CCTTC	7 cut(s)	73, 175, 260, 305, 506, 825, 904
HpyCH4III	ACNGT	4 cut(s)	70, 173, 688, 1150
HpyCH4IV	ACGT	1 cut(s)	628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 263
HpyF3I	CTNAG	3 cut(s)	395, 950, 1088
HpySE526I	ACGT	1 cut(s)	628
Hsp92II	CATG	9 cut(s)	262, 334, 487, 506, 804, 970, 1030, 1245, 1256
Kzo9I	GATC	6 cut(s)	21, 391, 673, 1023, 1033, 1245
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	3 cut(s)	816, 829, 1060
Lsp1109I	GCAGC	3 cut(s)	68, 526, 558
LweI	GCATC	2 cut(s)	551, 1107
MaeI	CTAG	4 cut(s)	341, 389, 560, 1369
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	3 cut(s)	343, 889, 1150
MalI	GATC	6 cut(s)	23, 393, 675, 1025, 1035, 1247
MboI	GATC	6 cut(s)	21, 391, 673, 1023, 1033, 1245
MflI	RGATCY	2 cut(s)	391, 673
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	7 cut(s)	162, 267, 449, 840, 851, 1185, 1314
MlyI	GAGTC	2 cut(s)	136, 753
MroXI	GAANNNNTTC	1 cut(s)	938
MseI	TTAA	4 cut(s)	186, 270, 1041, 1128
MslI	CAYNNNNRTG	2 cut(s)	786, 1279
MspA1I	CMGCKG	1 cut(s)	571
MspI	CCGG	2 cut(s)	313, 677
Mva1269I	GAATGC	1 cut(s)	1080
MvnI	CGCG	2 cut(s)	369, 459
MwoI	GCNNNNNNNGC	2 cut(s)	246, 263
NcoI	CCATGG	3 cut(s)	258, 483, 966
NdeI	CATATG	1 cut(s)	785
NdeII	GATC	6 cut(s)	21, 391, 673, 1023, 1033, 1245
NlaIII	CATG	9 cut(s)	262, 334, 487, 506, 804, 970, 1030, 1245, 1256
NlaIV	GGNNCC	3 cut(s)	615, 675, 991
NmuCI	GTSAC	1 cut(s)	1150
NruI	TCGCGA	1 cut(s)	369
NspI	RCATGY	1 cut(s)	506
NspV	TTCGAA	1 cut(s)	600
OliI	CACNNNNGTG	1 cut(s)	786
PaeI	GCATGC	1 cut(s)	506
PagI	TCATGA	1 cut(s)	1026
PciSI	GCTCTTC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	894
PctI	GAATGC	1 cut(s)	1080
PdmI	GAANNNNTTC	1 cut(s)	938
PfeI	GAWTC	2 cut(s)	85, 980
PkrI	GCNGC	3 cut(s)	58, 541, 573
Ple19I	CGATCG	1 cut(s)	24
PleI	GAGTC	2 cut(s)	136, 753
PpsI	GAGTC	2 cut(s)	136, 753
PpuMI	RGGWCCY	1 cut(s)	989
PsiI	TTATAA	2 cut(s)	1212, 1313
Psp1406I	AACGTT	1 cut(s)	628
Psp5II	RGGWCCY	1 cut(s)	989
PspN4I	GGNNCC	3 cut(s)	615, 675, 991
PspPI	GGNCC	5 cut(s)	224, 315, 515, 773, 989
PspPPI	RGGWCCY	1 cut(s)	989
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	2 cut(s)	391, 673
PvuI	CGATCG	1 cut(s)	24
PvuII	CAGCTG	1 cut(s)	571
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	786, 1279
SalI	GTCGAC	1 cut(s)	1363
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	4 cut(s)	186, 270, 1041, 1128
SatI	GCNGC	3 cut(s)	57, 540, 572
Sau3AI	GATC	6 cut(s)	21, 391, 673, 1023, 1033, 1245
Sau96I	GGNCC	5 cut(s)	224, 315, 515, 773, 989
SchI	GAGTC	2 cut(s)	136, 753
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	551, 1107
SfcI	CTRYAG	1 cut(s)	687
SfuI	TTCGAA	1 cut(s)	600
SinI	GGWCC	4 cut(s)	224, 315, 773, 989
SmiMI	CAYNNNNRTG	2 cut(s)	786, 1279
SpeI	ACTAGT	1 cut(s)	340
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	7 cut(s)	162, 267, 449, 840, 851, 1185, 1314
SsiI	CCGC	2 cut(s)	459, 704
SspI	AATATT	2 cut(s)	112, 362
SspMI	CTAG	4 cut(s)	341, 389, 560, 1369
StyI	CCWWGG	4 cut(s)	258, 483, 575, 966
TaaI	ACNGT	4 cut(s)	70, 173, 688, 1150
TaiI	ACGT	1 cut(s)	631
TaqII	GACCGA	1 cut(s)	519
TasI	AATT	7 cut(s)	162, 267, 449, 840, 851, 1185, 1314
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	85, 980
Tru1I	TTAA	4 cut(s)	186, 270, 1041, 1128
Tru9I	TTAA	4 cut(s)	186, 270, 1041, 1128
TscAI	CASTG	2 cut(s)	1305, 1327
TseFI	GTSAC	1 cut(s)	1150
TseI	GCWGC	3 cut(s)	56, 539, 571
Tsp45I	GTSAC	1 cut(s)	1150
TspDTI	ATGAA	5 cut(s)	191, 204, 396, 789, 1043
TspGWI	ACGGA	5 cut(s)	23, 209, 842, 880, 1345
TspRI	CASTG	2 cut(s)	1305, 1327
VpaK11BI	GGWCC	4 cut(s)	224, 315, 773, 989
XapI	RAATTY	4 cut(s)	162, 449, 851, 1185
XbaI	TCTAGA	1 cut(s)	388
XceI	RCATGY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1278
XmiI	GTMKAC	2 cut(s)	700, 1364
XmnI	GAANNNNTTC	1 cut(s)	938
XspI	CTAG	4 cut(s)	341, 389, 560, 1369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.