RchiOBHm_Chr3g0449471
MYB Family

PHR1-LIKE 1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
1235055 .. 1240092
5038 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41683

Sequence Viewer

Length: 1302 bp
ATGAGTAACTTGGGGACTTCCAAAGCTATGTCTGCAGCATTTCCACATCTCCCTGCCCCTCTTGATGTCAATTATTCCAGATTGCCAGATTCTTTTCAGGTTTCCGCACAAAGAGAAAAGCCTATGCATTCAATGTTACCACAGTCTTCTTCCCTTGGGAACTCATTTCCATCATCGTCCAGGCTTCCCTGTGACAGTCTGATTTCTTCAGTTTACCCTCATGAAAGACATTCCCAAATTTCTCCAATCAATAGGTTACCAAGTGGAGAATCACTGTCACTGACCCATTCACAGTTACAATCTACACCAGTGGCTAGTTACCCTGAGCAAAATAAAGATATTTCCTGGTGCCCAGATTCAATTCAGGAGTTTCTGCACTTTCCTGAAAATCTCCCTGATCAGAATGGCCTGGTAGATACTAGTACTGGTGTCATAATGTCTGATGATCATGCTGAAAAGACTGATTGGTCTGACTTGTATCCATTAATTTCTTTTGATGGTCCTCTGGATCCATATTGGGAGCTTTCGATTGATGATGTTCCTGCGGTGGATCCCAAACCGGAGGTGTTGAAGCATTCTTCTAATATCCCGGTGCAGCAGCCCGAGATTCAACAGCATCAGCCCGAGATTCAACAGCATCAGCCAGTACAATCTGGAGAAATTTTTACTAGCCCTGACCCAGTGTCCACTGCACCTTCAACCAAAGCTAGAATGCGTTGGACACAAGAACTTCATGAGGCCTTTGTTGAAGCTGTCAACCAGCTTGGTGGTAGTGAAAGAGCCACTCCTAAGGGTATCTTAAACGTCATGAAGGTTGAAAGCTTGACAATCTATCATGTAAAAAGCCATTTGCAGAAATATAGAACAGCCAGATACAAACCAGAGTCATCAGAAGGAACTTGTGAGAAGATTCCGACTCCTGTTGAAGAAATGAATTCTATAGACTTGAAAACGAGCGGTATGGGGATTACTGAAGCATTGCGGTTGCAGGTAGAACTCCAGAAGCAGCTTCATGAACAACTTGAGAGTCAAAGAAAGTTGCAGTTGGAAATTGAGGAACAATCAAAGTACCTTGAAAAGATGTTTGAGCAACAAAGGAAGATGGAAGACAACAGGGTCAAGCCGACATCATCAACGTCAGATGAGCATAATAAAATAGGAACCAGCACTCCTGTGGATGAAGGTTCACAAGATGCAAGTATGAAACAGAAGGCACAAGAATCTGAAACTCATGAGAATCATGATCCTCCAGGCGATGCCGATTCTGGTGCCGTCCCCACAAAACGAGCAAGGACTGGATGA

Protein Analysis

433

Amino Acids

48.36

Weight (kDa)

5.19

Isoelectric Point (pI)

62.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 237 - 288 5.2e-09 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 322 - 368 5.3e-17 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 466, 1115
Acc36I ACCTGC 1 cut(s) 979
AccB1I GGYRCC 2 cut(s) 348, 1268
AccBSI CCGCTC 1 cut(s) 957
AciI CCGC 4 cut(s) 105, 545, 957, 982
AclWI GGATC 5 cut(s) 503, 516, 545, 558, 1238
AcsI RAATTY 3 cut(s) 237, 660, 934
AcuI CTGAAG 2 cut(s) 192, 993
AfaI GTAC 3 cut(s) 424, 648, 1070
AhdI GACNNNNNGTC 1 cut(s) 682
AhlI ACTAGT 1 cut(s) 419
AjnI CCWGG 4 cut(s) 179, 344, 408, 1249
AleI CACNNNNGTG 1 cut(s) 1172
AloI GAACNNNNNNTCC 2 cut(s) 1153, 1185
AluBI AGCT 7 cut(s) 26, 523, 707, 752, 763, 822, 1009
AluI AGCT 7 cut(s) 26, 523, 707, 752, 763, 822, 1009
AlwI GGATC 5 cut(s) 503, 516, 545, 558, 1238
Ama87I CYCGRG 2 cut(s) 602, 623
AoxI GGCC 2 cut(s) 406, 738
ApeKI GCWGC 4 cut(s) 35, 595, 598, 1006
ApoI RAATTY 3 cut(s) 237, 660, 934
AseI ATTAAT 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 500
AsuC2I CCSGG 1 cut(s) 590
AvaI CYCGRG 2 cut(s) 602, 623
AvaII GGWCC 1 cut(s) 500
AxyI CCTNAGG 1 cut(s) 789
BaeGI GKGCMC 1 cut(s) 353
BamHI GGATCC 2 cut(s) 508, 550
BanI GGYRCC 2 cut(s) 348, 1268
BbsI GAAGAC 2 cut(s) 138, 1113
BbvI GCAGC 4 cut(s) 47, 607, 610, 1018
BccI CCATC 3 cut(s) 178, 491, 1096
BceAI ACGGC 1 cut(s) 1256
BcgI CGANNNNNNTGC 2 cut(s) 1250, 1284
BciT130I CCWGG 4 cut(s) 181, 346, 410, 1251
BciVI GTATCC 1 cut(s) 489
BclI TGATCA 2 cut(s) 397, 445
BcnI CCSGG 1 cut(s) 590
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 4 cut(s) 315, 420, 669, 708
BfmI CTRYAG 2 cut(s) 33, 939
BfuAI ACCTGC 1 cut(s) 979
BfuI GTATCC 1 cut(s) 489
BisI GCNGC 4 cut(s) 36, 596, 599, 1007
BlsI GCNGC 4 cut(s) 37, 597, 600, 1008
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 5 cut(s) 181, 346, 410, 590, 1251
Bme18I GGWCC 1 cut(s) 500
BmeRI GACNNNNNGTC 1 cut(s) 682
BmeT110I CYCGRG 2 cut(s) 602, 623
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 5 cut(s) 350, 510, 552, 1162, 1270
BmrFI CCNGG 5 cut(s) 181, 346, 410, 590, 1251
BmrI ACTGGG 1 cut(s) 674
BmsI GCATC 4 cut(s) 625, 646, 1183, 1246
BmuI ACTGGG 1 cut(s) 674
BpiI GAAGAC 2 cut(s) 138, 1113
BpmI CTGGAG 3 cut(s) 675, 983, 1233
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 1043
BpuMI CCSGG 1 cut(s) 590
BsaJI CCNNGG 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 559
BsaXI ACNNNNNCTCC 2 cut(s) 1153, 1183
Bse1I ACTGG 5 cut(s) 308, 430, 644, 680, 1300
Bse21I CCTNAGG 1 cut(s) 789
Bse3DI GCAATG 1 cut(s) 977
BseBI CCWGG 4 cut(s) 181, 346, 410, 1251
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 1183
BseMI GCAATG 1 cut(s) 977
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 5 cut(s) 308, 430, 644, 680, 1300
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 4 cut(s) 47, 607, 610, 1018
BsgI GTGCAG 3 cut(s) 359, 614, 675
BshFI GGCC 2 cut(s) 408, 740
BshNI GGYRCC 2 cut(s) 348, 1268
BsiHKCI CYCGRG 2 cut(s) 602, 623
BsiSI CCGG 2 cut(s) 560, 590
BslFI GGGAC 2 cut(s) 28, 1259
BsmFI GGGAC 2 cut(s) 28, 1259
BsmI GAATGC 3 cut(s) 127, 574, 717
BsnI GGCC 2 cut(s) 408, 740
BsoBI CYCGRG 2 cut(s) 602, 623
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 5 cut(s) 397, 445, 508, 550, 1243
BspACI CCGC 4 cut(s) 105, 545, 957, 982
BspANI GGCC 2 cut(s) 408, 740
BspCNI CTCAG 1 cut(s) 316
BspHI TCATGA 6 cut(s) 220, 733, 807, 1012, 1231, 1240
BspLI GGNNCC 5 cut(s) 350, 510, 552, 1162, 1270
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 979
BspPI GGATC 5 cut(s) 503, 516, 545, 558, 1238
BspT107I GGYRCC 2 cut(s) 348, 1268
BsrBI CCGCTC 1 cut(s) 957
BsrDI GCAATG 1 cut(s) 977
BsrI ACTGG 5 cut(s) 308, 430, 644, 680, 1300
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 5 cut(s) 397, 445, 508, 550, 1243
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 4 cut(s) 181, 346, 410, 1251
Bst4CI ACNGT 4 cut(s) 144, 197, 276, 294
BstDEI CTNAG 2 cut(s) 324, 789
BstEII GGTNACC 1 cut(s) 255
BstF5I GGATG 1 cut(s) 1183
BstKTI GATC 5 cut(s) 400, 448, 511, 553, 1246
BstMBI GATC 5 cut(s) 397, 445, 508, 550, 1243
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 4 cut(s) 181, 346, 410, 1251
BstPI GGTNACC 1 cut(s) 255
BstSCI CCNGG 5 cut(s) 179, 344, 408, 588, 1249
BstSFI CTRYAG 2 cut(s) 33, 939
BstSLI GKGCMC 1 cut(s) 353
BstV1I GCAGC 4 cut(s) 47, 607, 610, 1018
BstV2I GAAGAC 2 cut(s) 138, 1113
BstX2I RGATCY 2 cut(s) 508, 550
BstXI CCANNNNNNTGG 1 cut(s) 767
BstYI RGATCY 2 cut(s) 508, 550
Bsu36I CCTNAGG 1 cut(s) 789
BsuI GTATCC 1 cut(s) 489
BsuRI GGCC 2 cut(s) 408, 740
BtgZI GCGATG 1 cut(s) 1269
BtsCI GGATG 1 cut(s) 1183
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 5 cut(s) 272, 278, 315, 687, 687
BveI ACCTGC 1 cut(s) 979
CciI TCATGA 6 cut(s) 220, 733, 807, 1012, 1231, 1240
Cfr13I GGNCC 1 cut(s) 500
Csp6I GTAC 3 cut(s) 423, 647, 1069
CviAII CATG 8 cut(s) 221, 449, 734, 808, 836, 1013, 1232, 1241
CviQI GTAC 3 cut(s) 423, 647, 1069
DdeI CTNAG 2 cut(s) 324, 789
DpnI GATC 5 cut(s) 399, 447, 510, 552, 1245
DpnII GATC 5 cut(s) 397, 445, 508, 550, 1243
DrdI GACNNNNNNGTC 2 cut(s) 466, 1115
DriI GACNNNNNGTC 1 cut(s) 682
DseDI GACNNNNNNGTC 2 cut(s) 466, 1115
Eam1105I GACNNNNNGTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 154
Eco147I AGGCCT 1 cut(s) 740
Eco47I GGWCC 1 cut(s) 500
Eco57I CTGAAG 2 cut(s) 192, 993
Eco81I CCTNAGG 1 cut(s) 789
Eco88I CYCGRG 2 cut(s) 602, 623
Eco91I GGTNACC 1 cut(s) 255
EcoO65I GGTNACC 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 934
EcoRII CCWGG 4 cut(s) 179, 344, 408, 1249
EcoT14I CCWWGG 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 8 cut(s) 224, 452, 737, 811, 839, 1016, 1235, 1244
FalI AAGNNNNNCTT 2 cut(s) 782, 814
FaqI GGGAC 2 cut(s) 28, 1259
FatI CATG 8 cut(s) 220, 448, 733, 807, 835, 1012, 1231, 1240
FbaI TGATCA 2 cut(s) 397, 445
Fnu4HI GCNGC 4 cut(s) 36, 596, 599, 1007
FokI GGATG 1 cut(s) 1190
Fsp4HI GCNGC 4 cut(s) 36, 596, 599, 1007
FspBI CTAG 4 cut(s) 315, 420, 669, 708
GluI GCNGC 4 cut(s) 36, 596, 599, 1007
GsuI CTGGAG 3 cut(s) 675, 983, 1233
HaeIII GGCC 2 cut(s) 408, 740
HapII CCGG 2 cut(s) 560, 590
Hin1II CATG 8 cut(s) 224, 452, 737, 811, 839, 1016, 1235, 1244
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HindIII AAGCTT 1 cut(s) 820
HpaII CCGG 2 cut(s) 560, 590
Hpy166II GTNNAC 4 cut(s) 214, 687, 757, 1187
Hpy188I TCNGA 8 cut(s) 201, 402, 442, 472, 892, 915, 1141, 1225
Hpy8I GTNNAC 4 cut(s) 214, 687, 757, 1187
HpyAV CCTTC 5 cut(s) 705, 805, 887, 1175, 1204
HpyCH4III ACNGT 4 cut(s) 144, 197, 276, 294
HpyCH4IV ACGT 2 cut(s) 804, 1136
HpyCH4V TGCA 9 cut(s) 35, 127, 376, 595, 692, 853, 988, 1042, 1196
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 324, 789
HpySE526I ACGT 2 cut(s) 804, 1136
Hsp92II CATG 8 cut(s) 224, 452, 737, 811, 839, 1016, 1235, 1244
Ksp22I TGATCA 2 cut(s) 397, 445
Kzo9I GATC 5 cut(s) 397, 445, 508, 550, 1243
LmnI GCTCC 1 cut(s) 520
Lsp1109I GCAGC 4 cut(s) 47, 607, 610, 1018
LweI GCATC 4 cut(s) 625, 646, 1183, 1246
MaeI CTAG 4 cut(s) 315, 420, 669, 708
MaeII ACGT 2 cut(s) 804, 1136
MaeIII GTNAC 7 cut(s) 5, 135, 191, 255, 276, 294, 317
MalI GATC 5 cut(s) 399, 447, 510, 552, 1245
MbiI CCGCTC 1 cut(s) 957
MboI GATC 5 cut(s) 397, 445, 508, 550, 1243
MboII GAAGA 8 cut(s) 138, 141, 198, 570, 919, 938, 1111, 1118
MflI RGATCY 2 cut(s) 508, 550
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 7 cut(s) 70, 237, 360, 486, 660, 934, 1050
MlyI GAGTC 3 cut(s) 893, 910, 1036
MmeI TCCRAC 3 cut(s) 698, 938, 1026
MnlI CCTC 7 cut(s) 69, 228, 513, 556, 730, 1048, 1257
Mph1103I ATGCAT 1 cut(s) 129
MseI TTAA 2 cut(s) 485, 800
MslI CAYNNNNRTG 1 cut(s) 1172
MspI CCGG 2 cut(s) 560, 590
MspR9I CCNGG 5 cut(s) 181, 346, 410, 590, 1251
Mva1269I GAATGC 3 cut(s) 127, 574, 717
MvaI CCWGG 4 cut(s) 181, 346, 410, 1251
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 590
NdeII GATC 5 cut(s) 397, 445, 508, 550, 1243
NlaIII CATG 8 cut(s) 224, 452, 737, 811, 839, 1016, 1235, 1244
NlaIV GGNNCC 5 cut(s) 350, 510, 552, 1162, 1270
NmuCI GTSAC 2 cut(s) 191, 276
NsiI ATGCAT 1 cut(s) 129
OliI CACNNNNGTG 1 cut(s) 1172
PagI TCATGA 6 cut(s) 220, 733, 807, 1012, 1231, 1240
PceI AGGCCT 1 cut(s) 740
PctI GAATGC 3 cut(s) 127, 574, 717
PfeI GAWTC 9 cut(s) 89, 269, 356, 607, 628, 910, 1220, 1237, 1262
PkrI GCNGC 4 cut(s) 37, 597, 600, 1008
PleI GAGTC 3 cut(s) 892, 910, 1035
PpsI GAGTC 3 cut(s) 892, 910, 1035
PshBI ATTAAT 1 cut(s) 485
Psp6I CCWGG 4 cut(s) 179, 344, 408, 1249
PspEI GGTNACC 1 cut(s) 255
PspGI CCWGG 4 cut(s) 179, 344, 408, 1249
PspN4I GGNNCC 5 cut(s) 350, 510, 552, 1162, 1270
PspPI GGNCC 1 cut(s) 500
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 2 cut(s) 508, 550
RsaI GTAC 3 cut(s) 424, 648, 1070
RsaNI GTAC 3 cut(s) 423, 647, 1069
RseI CAYNNNNRTG 1 cut(s) 1172
SaqAI TTAA 2 cut(s) 485, 800
SatI GCNGC 4 cut(s) 36, 596, 599, 1007
Sau3AI GATC 5 cut(s) 397, 445, 508, 550, 1243
Sau96I GGNCC 1 cut(s) 500
ScaI AGTACT 1 cut(s) 424
SchI GAGTC 3 cut(s) 893, 910, 1036
ScrFI CCNGG 5 cut(s) 181, 346, 410, 590, 1251
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 4 cut(s) 625, 646, 1183, 1246
SfcI CTRYAG 2 cut(s) 33, 939
SinI GGWCC 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 1172
SmlI CTYRAG 1 cut(s) 1022
SmoI CTYRAG 1 cut(s) 1022
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 7 cut(s) 70, 237, 360, 486, 660, 934, 1050
SseBI AGGCCT 1 cut(s) 740
SsiI CCGC 4 cut(s) 105, 545, 957, 982
SspMI CTAG 4 cut(s) 315, 420, 669, 708
StuI AGGCCT 1 cut(s) 740
StyD4I CCNGG 5 cut(s) 179, 344, 408, 588, 1249
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 4 cut(s) 144, 197, 276, 294
TaiI ACGT 2 cut(s) 807, 1139
TaqI TCGA 1 cut(s) 527
TasI AATT 7 cut(s) 70, 237, 360, 486, 660, 934, 1050
TatI WGTACW 2 cut(s) 422, 646
TfiI GAWTC 9 cut(s) 89, 269, 356, 607, 628, 910, 1220, 1237, 1262
Tru1I TTAA 2 cut(s) 485, 800
Tru9I TTAA 2 cut(s) 485, 800
TscAI CASTG 5 cut(s) 279, 285, 315, 687, 694
TseFI GTSAC 2 cut(s) 191, 276
TseI GCWGC 4 cut(s) 35, 595, 598, 1006
Tsp45I GTSAC 2 cut(s) 191, 276
TspDTI ATGAA 8 cut(s) 237, 722, 824, 947, 1001, 1029, 1194, 1217
TspRI CASTG 5 cut(s) 279, 285, 315, 687, 694
VpaK11BI GGWCC 1 cut(s) 500
VspI ATTAAT 1 cut(s) 485
XapI RAATTY 3 cut(s) 237, 660, 934
XcmI CCANNNNNNNNNTGG 1 cut(s) 1171
XspI CTAG 4 cut(s) 315, 420, 669, 708
ZrmI AGTACT 1 cut(s) 424
Zsp2I ATGCAT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.