Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003102

Physical Location & Seq

Genomic Coordinates Forward (+)

1231498 .. 1234188

Gene Structure 2691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG018800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGAGTAACTTGGGGACTTCCAAAGCTATGTCTTCAGCATTTCCACATCTCCCTGCCCCTCTTGATGTCAATTATTCCAGATTGCCAGATTCTTTTCAGGTTTCCGCACAAAGAGAAAAGCCTATGCATTCAATGTTACCACAGTCTTCTTCCCTTGGGAACTCATTTCCATCATCGTCCAGGCTTCCCTATGACAGTCAGATTTCTTCAGTTTGCCCTCATGAAAGACATTCCCAAATTTCTCCAATCAATAAGTTACCAAGTGGAGAATCACTGTCACTGACCCATTCACAGTTACAATCTACACCAGTGGCTAGTTACCCTGAGCAAACTAGAGATATTTCCTGGTGCCCAGATTCAATTCAGGAGTTTCTGCACTTTCCTGAAAATCTCCCTGATCAGAATGGCCTGGTAGATACTAGTACTGGTGTCATAATGTCTGATGATCATGCTGAAAAGACTGATTGGTCTGACTTGTATCCATTAATTTCTTTTGATGGTCCTCTGGATCCATATTGGGAGCTTTCGATTGATGATGTTCCAGCGGTGGATCCCAAACCGGAGGTGTTGAAGCATTGTTCTGATATCCCGGTGCAGCAGCCCGAGATTCAACAGCATCAGCCAGTACAATCTGGAGAAATTTTTACTAGCCCTGACCCAGTGTCCACTGCACCTTCAACCAAAGCTAGAATGCGTTGGACACAAGAACTTCATGAGGCCTTTGTTGAAGCTGTCAACCAGCTTGGTGGTAGTGAAAGAGCCACTCCTAAGGGTATCTTAAACGTCATGAAGGTTGAAAGCTTGACAATCTATCATGTAAAAAGCCATTTACAGAAATATAGAACAGCCAGATACAAACCAGAGTCATCAGAAGGAACTTGTGAGAAGAATCTGACCCCTGTTGAAGAAATGAATTCTATAGACTTGAAAACAAGCGGTATGGGGATTACTGAAGCATTGCGGTTGCAGGTAGAACTCCAGAAGCAGCTTCATGAACAACTTGAGAGTCAAAGAAAGTTGCAGTTGGAAATTGAGGAACAATCAAAGTACCTTGAAAAGATGTTTGAGCAACAAAGGAAGATGGAAGACAACAGGGTCAAGCCGACATCATCAACGTCAGATGAGCATAATAAAATAGGAACCAGCACTCCTGTCGATGAAGGTTCACAAGATGCAAGTATGAAACAGAAGGCACAAGAATCTGAAACTCATGATCCTCCAGGCGATGCCGATTCTGGTGATGTCCCCACAAAACGAGCAAGGACTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

423

Amino Acids

47.21

Weight (kDa)

5.09

Isoelectric Point (pI)

62.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	230 - 281	5e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	315 - 361	5.1e-17	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04450 AT3G04450 AT3G04450 AT3G04450 AT5G29000 AT5G29000 AT5G29000 AT5G29000
fragaria_vesca	FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670
malus_domestica	MD04G1231600.v1.1 MD12G1249600.v1.1
prunus_persica	Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1
pyrus_communis	pycom04g20490 pycom12g22940
rosa_chinensis	RchiOBHm_Chr3g0449471
rosa_laevigata	RLG00000025828
rosa_multiflora	Rmu_sc0019012.1_g000004
rosa_roxburghii	Rroxscaffold_6G00427420
rosa_rugosa	Rorug02G0621100 Rorug02G0621200 Rorug02G0621300
rosa_samantha	Rh3AG018800 Rh3AG019400 Rh3BG019200 Rh3CG018100 Rh3DG019400
rosa_wichuraiana	Rw3G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	466, 1094
Acc36I	ACCTGC	1 cut(s)	958
AccB1I	GGYRCC	1 cut(s)	348
AciI	CCGC	4 cut(s)	105, 545, 936, 961
AclWI	GGATC	5 cut(s)	503, 516, 545, 558, 1208
AcsI	RAATTY	3 cut(s)	237, 639, 913
AcuI	CTGAAG	3 cut(s)	18, 192, 972
AfaI	GTAC	3 cut(s)	424, 627, 1049
AhdI	GACNNNNNGTC	1 cut(s)	661
AhlI	ACTAGT	1 cut(s)	419
AjnI	CCWGG	4 cut(s)	179, 344, 408, 1219
AloI	GAACNNNNNNTCC	2 cut(s)	1132, 1164
AluBI	AGCT	7 cut(s)	26, 523, 686, 731, 742, 801, 988
AluI	AGCT	7 cut(s)	26, 523, 686, 731, 742, 801, 988
AlwI	GGATC	5 cut(s)	503, 516, 545, 558, 1208
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	406, 717
ApeKI	GCWGC	3 cut(s)	595, 598, 985
ApoI	RAATTY	3 cut(s)	237, 639, 913
AseI	ATTAAT	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	500
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	1250
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	768
BaeGI	GKGCMC	1 cut(s)	353
BamHI	GGATCC	2 cut(s)	508, 550
BanI	GGYRCC	1 cut(s)	348
BbsI	GAAGAC	3 cut(s)	24, 138, 1092
BbvI	GCAGC	3 cut(s)	607, 610, 997
BccI	CCATC	3 cut(s)	178, 491, 1075
BcgI	CGANNNNNNTGC	2 cut(s)	1135, 1169
BciT130I	CCWGG	4 cut(s)	181, 346, 410, 1221
BciVI	GTATCC	1 cut(s)	489
BclI	TGATCA	2 cut(s)	397, 445
BcnI	CCSGG	1 cut(s)	590
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	5 cut(s)	315, 333, 420, 648, 687
BfmI	CTRYAG	1 cut(s)	918
BfuAI	ACCTGC	1 cut(s)	958
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	3 cut(s)	596, 599, 986
BlsI	GCNGC	3 cut(s)	597, 600, 987
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	5 cut(s)	181, 346, 410, 590, 1221
Bme18I	GGWCC	1 cut(s)	500
BmeRI	GACNNNNNGTC	1 cut(s)	661
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	4 cut(s)	350, 510, 552, 1141
BmrFI	CCNGG	5 cut(s)	181, 346, 410, 590, 1221
BmrI	ACTGGG	1 cut(s)	653
BmsI	GCATC	3 cut(s)	625, 1162, 1216
BmuI	ACTGGG	1 cut(s)	653
BpiI	GAAGAC	3 cut(s)	24, 138, 1092
BpmI	CTGGAG	3 cut(s)	654, 962, 1203
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	1022
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	2 cut(s)	1132, 1162
Bse1I	ACTGG	5 cut(s)	308, 430, 623, 659, 1270
Bse21I	CCTNAGG	1 cut(s)	768
Bse3DI	GCAATG	1 cut(s)	956
BseBI	CCWGG	4 cut(s)	181, 346, 410, 1221
BseDI	CCNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	956
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	5 cut(s)	308, 430, 623, 659, 1270
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	607, 610, 997
BsgI	GTGCAG	3 cut(s)	359, 614, 654
BshFI	GGCC	2 cut(s)	408, 719
BshNI	GGYRCC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	560, 590
BslFI	GGGAC	2 cut(s)	28, 1229
BsmFI	GGGAC	2 cut(s)	28, 1229
BsmI	GAATGC	2 cut(s)	127, 696
BsnI	GGCC	2 cut(s)	408, 719
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	5 cut(s)	397, 445, 508, 550, 1213
BspACI	CCGC	4 cut(s)	105, 545, 936, 961
BspANI	GGCC	2 cut(s)	408, 719
BspCNI	CTCAG	1 cut(s)	316
BspHI	TCATGA	5 cut(s)	220, 712, 786, 991, 1210
BspLI	GGNNCC	4 cut(s)	350, 510, 552, 1141
BspMI	ACCTGC	1 cut(s)	958
BspPI	GGATC	5 cut(s)	503, 516, 545, 558, 1208
BspT107I	GGYRCC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	956
BsrI	ACTGG	5 cut(s)	308, 430, 623, 659, 1270
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	5 cut(s)	397, 445, 508, 550, 1213
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	4 cut(s)	181, 346, 410, 1221
Bst4CI	ACNGT	4 cut(s)	144, 197, 276, 294
BstDEI	CTNAG	2 cut(s)	324, 768
BstKTI	GATC	5 cut(s)	400, 448, 511, 553, 1216
BstMBI	GATC	5 cut(s)	397, 445, 508, 550, 1213
BstNI	CCWGG	4 cut(s)	181, 346, 410, 1221
BstSCI	CCNGG	5 cut(s)	179, 344, 408, 588, 1219
BstSFI	CTRYAG	1 cut(s)	918
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	3 cut(s)	607, 610, 997
BstV2I	GAAGAC	3 cut(s)	24, 138, 1092
BstX2I	RGATCY	2 cut(s)	508, 550
BstXI	CCANNNNNNTGG	1 cut(s)	746
BstYI	RGATCY	2 cut(s)	508, 550
Bsu36I	CCTNAGG	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	408, 719
BtgZI	GCGATG	1 cut(s)	1239
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	5 cut(s)	272, 278, 315, 666, 666
BveI	ACCTGC	1 cut(s)	958
CciI	TCATGA	5 cut(s)	220, 712, 786, 991, 1210
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	3 cut(s)	423, 626, 1048
CviAII	CATG	7 cut(s)	221, 449, 713, 787, 815, 992, 1211
CviQI	GTAC	3 cut(s)	423, 626, 1048
DdeI	CTNAG	2 cut(s)	324, 768
DpnI	GATC	5 cut(s)	399, 447, 510, 552, 1215
DpnII	GATC	5 cut(s)	397, 445, 508, 550, 1213
DrdI	GACNNNNNNGTC	2 cut(s)	466, 1094
DriI	GACNNNNNGTC	1 cut(s)	661
DseDI	GACNNNNNNGTC	2 cut(s)	466, 1094
Eam1105I	GACNNNNNGTC	1 cut(s)	661
Eco130I	CCWWGG	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	719
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	500
Eco57I	CTGAAG	3 cut(s)	18, 192, 972
Eco81I	CCTNAGG	1 cut(s)	768
Eco88I	CYCGRG	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	4 cut(s)	179, 344, 408, 1219
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	7 cut(s)	224, 452, 716, 790, 818, 995, 1214
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FaqI	GGGAC	2 cut(s)	28, 1229
FatI	CATG	7 cut(s)	220, 448, 712, 786, 814, 991, 1210
FbaI	TGATCA	2 cut(s)	397, 445
Fnu4HI	GCNGC	3 cut(s)	596, 599, 986
Fsp4HI	GCNGC	3 cut(s)	596, 599, 986
FspBI	CTAG	5 cut(s)	315, 333, 420, 648, 687
GluI	GCNGC	3 cut(s)	596, 599, 986
GsuI	CTGGAG	3 cut(s)	654, 962, 1203
HaeIII	GGCC	2 cut(s)	408, 719
HapII	CCGG	2 cut(s)	560, 590
Hin1II	CATG	7 cut(s)	224, 452, 716, 790, 818, 995, 1214
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	799
HinfI	GANTC	9 cut(s)	89, 269, 356, 607, 863, 889, 1006, 1199, 1232
HpaII	CCGG	2 cut(s)	560, 590
HphI	GGTGA	1 cut(s)	1250
Hpy166II	GTNNAC	3 cut(s)	666, 736, 1166
Hpy188I	TCNGA	9 cut(s)	201, 402, 442, 472, 583, 871, 894, 1120, 1204
Hpy8I	GTNNAC	3 cut(s)	666, 736, 1166
HpyAV	CCTTC	5 cut(s)	684, 784, 866, 1154, 1183
HpyCH4III	ACNGT	4 cut(s)	144, 197, 276, 294
HpyCH4IV	ACGT	2 cut(s)	783, 1115
HpyCH4V	TGCA	7 cut(s)	127, 376, 595, 671, 967, 1021, 1175
HpyF3I	CTNAG	2 cut(s)	324, 768
HpySE526I	ACGT	2 cut(s)	783, 1115
Hsp92II	CATG	7 cut(s)	224, 452, 716, 790, 818, 995, 1214
Ksp22I	TGATCA	2 cut(s)	397, 445
Kzo9I	GATC	5 cut(s)	397, 445, 508, 550, 1213
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	3 cut(s)	607, 610, 997
LweI	GCATC	3 cut(s)	625, 1162, 1216
MaeI	CTAG	5 cut(s)	315, 333, 420, 648, 687
MaeII	ACGT	2 cut(s)	783, 1115
MaeIII	GTNAC	6 cut(s)	5, 135, 255, 276, 294, 317
MalI	GATC	5 cut(s)	399, 447, 510, 552, 1215
MboI	GATC	5 cut(s)	397, 445, 508, 550, 1213
MboII	GAAGA	8 cut(s)	24, 138, 141, 198, 898, 917, 1090, 1097
MflI	RGATCY	2 cut(s)	508, 550
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	7 cut(s)	70, 237, 360, 486, 639, 913, 1029
MlyI	GAGTC	2 cut(s)	872, 1015
MmeI	TCCRAC	2 cut(s)	677, 1005
MnlI	CCTC	7 cut(s)	69, 228, 513, 556, 709, 1027, 1227
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	2 cut(s)	485, 779
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	2 cut(s)	560, 590
MspR9I	CCNGG	5 cut(s)	181, 346, 410, 590, 1221
Mva1269I	GAATGC	2 cut(s)	127, 696
MvaI	CCWGG	4 cut(s)	181, 346, 410, 1221
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	5 cut(s)	397, 445, 508, 550, 1213
NlaIII	CATG	7 cut(s)	224, 452, 716, 790, 818, 995, 1214
NlaIV	GGNNCC	4 cut(s)	350, 510, 552, 1141
NmuCI	GTSAC	1 cut(s)	276
NsiI	ATGCAT	1 cut(s)	129
PagI	TCATGA	5 cut(s)	220, 712, 786, 991, 1210
PceI	AGGCCT	1 cut(s)	719
PctI	GAATGC	2 cut(s)	127, 696
PfeI	GAWTC	7 cut(s)	89, 269, 356, 607, 889, 1199, 1232
PkrI	GCNGC	3 cut(s)	597, 600, 987
PleI	GAGTC	2 cut(s)	871, 1014
PpsI	GAGTC	2 cut(s)	871, 1014
PshBI	ATTAAT	1 cut(s)	485
Psp6I	CCWGG	4 cut(s)	179, 344, 408, 1219
PspGI	CCWGG	4 cut(s)	179, 344, 408, 1219
PspN4I	GGNNCC	4 cut(s)	350, 510, 552, 1141
PspPI	GGNCC	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	508, 550
RsaI	GTAC	3 cut(s)	424, 627, 1049
RsaNI	GTAC	3 cut(s)	423, 626, 1048
SaqAI	TTAA	2 cut(s)	485, 779
SatI	GCNGC	3 cut(s)	596, 599, 986
Sau3AI	GATC	5 cut(s)	397, 445, 508, 550, 1213
Sau96I	GGNCC	1 cut(s)	500
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	2 cut(s)	872, 1015
ScrFI	CCNGG	5 cut(s)	181, 346, 410, 590, 1221
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	3 cut(s)	625, 1162, 1216
SfcI	CTRYAG	1 cut(s)	918
SinI	GGWCC	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	1001
SmoI	CTYRAG	1 cut(s)	1001
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	7 cut(s)	70, 237, 360, 486, 639, 913, 1029
SseBI	AGGCCT	1 cut(s)	719
SsiI	CCGC	4 cut(s)	105, 545, 936, 961
SspMI	CTAG	5 cut(s)	315, 333, 420, 648, 687
StuI	AGGCCT	1 cut(s)	719
StyD4I	CCNGG	5 cut(s)	179, 344, 408, 588, 1219
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	4 cut(s)	144, 197, 276, 294
TaiI	ACGT	2 cut(s)	786, 1118
TaqI	TCGA	2 cut(s)	527, 1155
TasI	AATT	7 cut(s)	70, 237, 360, 486, 639, 913, 1029
TatI	WGTACW	2 cut(s)	422, 625
TfiI	GAWTC	7 cut(s)	89, 269, 356, 607, 889, 1199, 1232
Tru1I	TTAA	2 cut(s)	485, 779
Tru9I	TTAA	2 cut(s)	485, 779
TscAI	CASTG	5 cut(s)	279, 285, 315, 666, 673
TseFI	GTSAC	1 cut(s)	276
TseI	GCWGC	3 cut(s)	595, 598, 985
Tsp45I	GTSAC	1 cut(s)	276
TspDTI	ATGAA	8 cut(s)	237, 701, 803, 926, 980, 1008, 1173, 1196
TspRI	CASTG	5 cut(s)	279, 285, 315, 666, 673
VpaK11BI	GGWCC	1 cut(s)	500
VspI	ATTAAT	1 cut(s)	485
XapI	RAATTY	3 cut(s)	237, 639, 913
XspI	CTAG	5 cut(s)	315, 333, 420, 648, 687
ZrmI	AGTACT	1 cut(s)	424
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.