Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003102

Physical Location & Seq

Genomic Coordinates Reverse (-)

73811156 .. 73817457

Gene Structure 6302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0621200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGCAAACCACTGTAGCGGAGTGGCTCAAGGTGCCTGTCCAAGGGATTAAAAGGTTTGGAGAAGAAATGAGGCCTGTAAAGCTGACTACAAAAGTTTTTGGCTACGCCCCAGCAAAAAATGATTTTCTATTTGAAAAGCGCCTTCAAAACTACATTTTCGATATCCTTATGCAATATTCAAGAGGGAAGTCCGCTCTAATTTTTTGCTCAACTAGAAAAGGTGCACAAGAAGCAGCACAGATACTTTCTCAGACAGTCATGGCCTTTGGTCATTCAAATCCATTCATTAAAAGCAGAGAACAGCAAGAGAGGCTAAGGGAAGCTTCATTGTCATGCAGTGACAAACAAATGCAATCTTATATGATTTATGGTGTTGGTTATCACAACGGTGGCCTTTGCCTCAAGGATCGTAATCTCATTGAAAGTCTTTTCCTTAAGGGTGATGTTCAAATTCTGTGCACAACAAATACTCTTGCTCATGGAATCAACCTACCAGCACATACAGTAGTCATAAAATCAACACAGCACTTCAACAAAGAAAAAGGAGTCTACATGGAAATTGACCGATCTACACTGCTACAGATGTGTGGGAGGGCCGGTCGGCCACCTTTTGATGATACAGGAATGGTTATAATCATGACAAGAAGAGATACGGTTCACTTGTATGAGAATCTCCTGAATGGATGTGAGATGGTGGAATCACAATTGCTTTCATGTTTGACGGAGCATTTAACTGCAGAGATAGTTCAACTGACTGTCTCTGACATTACAAGGGCAATCGAATGGATGAAGTGCTCTTTCTTGTATGTGAGAATGAAGAAGAATCCCGGACACTATGCAGTTAGAAAAGTGATTTCCAATGATCGTATAGAAAAGCATATGCTAGAGGTCTGTGTACAGAAAGTTAATGAGTTGTCACAGCATCAGATGATATGGACTGATGAAGATGGTTTTCTGTTGAAACCACTAGAACCTGGGAGGCTGATGACGAAGTACTATTTGAAATTTGACACAATGAAATACATTATTCAGACACCTGCAAACTGCAGCTTGGAAGATGCTCTTCATGTGATATGCCGTGCTGAGGAAATTTCATGGATACAGCTCAGGCGCAATGAGAAAAAGCTTCTAAATGACATAAACACTGATAAAGATGGTCGACTTCGCTTTCACATTCTTGGTGACAAAGGGAAGCGAAAAAAGCGTATTCAAACCAGAGAAGAAAAGATATTTCTTTTGGCTAATGACTGCTTGACTGGTGATCCATCGGTTCATGATTTATCCCTTACCCAGGATATGAACTCCATATGCTCAAATGGCTGTAGAATTGCCAGATGCATGAAAGAATTTTTTATTTACCAAAAGAATTACAAAGGAGCCTTGAACTCGATGCTTTTGGCAAAGTCTATGTATCAGAAACTCTGGGATGACAGTCCATACTTGCTGAAACAATTACCAGGGATTGGAATGGTGACTGCGAAGGCACTACATTCGATGGGAGTTAAATCATTTGAGTCACTAGCTGAGGCTGATCCTAGGAGAATTGAGATAGTCACTGGTCGAAAATACCCATATGGGAACCATATAAAAGAGTCTCTACTGTCTCTACCTCCAAAGGTTGAGTTGAAAGTTGAGGAAACTGAATGCCGGGGGCAAGGGAAACTGAAGCTAGCAGTGACACTGACTAGGCTATCACAGACACTCCAATCAACAAAACGACATTATGCTGATATGATTGTAGGTTCAGAAGAAGATAACCTGGTTCTCTTTCATGAGAAAATAAGAGTTGATGAATTCTCGAGCCCCTATAGCGCAACAGTTCTCCTGTCAAATCCCCAACAAGGAAAGCTGACTGTTAAGGCTGATCTTATATTTGAAGAATACATTGGTATTGATCTAAACCAGGAGCTTATCTTAATGAAGAAAAGCAATTTAAGTGCAAATAACAAACGAGGAAAAAAAGCACCCTCTCTTCCTCTACCTGAGGAAGTATGTATCATAGAAGATGATACTTATGAAGGCCCAAGTGAAGTGCTTCCAAACTCGACGAAATCCAAAAGGGTAGATGGTCCCATGCCCAGTTTCAAGTTTCTAGATGAAGACTCTGAAGAAGATGAGGTTGCCGACAAAGTTCATGAAGATGAGATTGCTGCCAAATTTCAAACTGATGACAAAGTTGTGACACAACAAACAGTATTTGACCACATACGTGAAAAGGCAAAGAACTTCCCTGTCTTGGTGTCATCAAATAGTGTGCTTCCTCCATCATCAGAGCCCTTGGAATTAGCAAGGAAACGTGCTCGTGAGAAGAAGCTTGGACCGGAAAGTGGAGTAGAGGTTCTGGAAGAATTAGAATGGAATAAAGTTCCAAGACGAACTGTGGTCAATCCATCTTCAGAACTTAAAGAAGCAGAACAACATCTTTCTAGTATCAAAAATCATCCAAATCCCAGAAGCTCAGCTGCCCTGAACGTCATGGATGGCAGAGCTGGGCCTCATACTGACCCTGATGTCAAACCTCTAACAGGAGAAACAATATTCGAGCACATACGCACAAAAGCTAAGAATTTTCCGGTGATCAATAAACCAAATGTGGAGGAGGCTGAGTCTTTAATCCAGACAAAACAACGCCTATATAAGACTGAACCAGAGTTTAGCATGGATATTACTGCCGTGCTGAAAGGAAGAAAACCAAATGAGGTTATCAGAGATACTGAATGTGATAGGAGGTTGATCTCCGAAAGCTCCTGCAACCCTTATGGAATATTGAATGCTTCTCCCGGAGGTTTAAGCAATGGAGCCAATCTCTCATCAAGTAACATGCCATCTTTCGATATCTCCATGTTCAAGAATCCGAAGCGACCTGCAGATCCAGCAAGCACTGTGGAGAATACTAGGAAGAAACATCAACACTCTCCAATTGTACCACCAAGGCACTGCTCGTTGACAGCAGTTGGAAAATCCAGAGAAGTAGAAACATTTCTTGGGTTTGAGAGTGTCTTTTCCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

1004

Amino Acids

113.83

Weight (kDa)

8.43

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	122 - 201	2.1e-08	Helicase conserved C-terminal domain
WHD_SNRNP200	PF23445	233 - 312	4.8e-13	Winged Helix-turn-helix domain
Sec63	PF02889	322 - 636	3.3e-47	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04450 AT3G04450 AT3G04450 AT3G04450 AT5G29000 AT5G29000 AT5G29000 AT5G29000
fragaria_vesca	FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670
malus_domestica	MD04G1231600.v1.1 MD12G1249600.v1.1
prunus_persica	Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1
pyrus_communis	pycom04g20490 pycom12g22940
rosa_chinensis	RchiOBHm_Chr3g0449471
rosa_laevigata	RLG00000025828
rosa_multiflora	Rmu_sc0019012.1_g000004
rosa_roxburghii	Rroxscaffold_6G00427420
rosa_rugosa	Rorug02G0621100 Rorug02G0621200 Rorug02G0621300
rosa_samantha	Rh3AG018800 Rh3AG019400 Rh3BG019200 Rh3CG018100 Rh3DG019400
rosa_wichuraiana	Rw3G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AarI	CACCTGC	1 cut(s)	1045
AasI	GACNNNNNNGTC	1 cut(s)	2510
Acc36I	ACCTGC	2 cut(s)	1045, 2872
AccB1I	GGYRCC	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	1463
AccBSI	CCGCTC	1 cut(s)	194
AccI	GTMKAC	2 cut(s)	549, 1159
AciI	CCGC	2 cut(s)	17, 192
AclWI	GGATC	4 cut(s)	414, 1256, 1526, 2864
AcoI	YGGCCR	1 cut(s)	602
AcsI	RAATTY	7 cut(s)	450, 1004, 1089, 1346, 1793, 2156, 2566
AcuI	CTGAAG	3 cut(s)	1685, 2127, 2379
AfaI	GTAC	3 cut(s)	897, 995, 2925
AfiI	CCNNNNNNNGG	8 cut(s)	41, 1084, 1291, 1463, 1841, 2236, 2327, 2525
AflII	CTTAAG	1 cut(s)	434
AjnI	CCWGG	5 cut(s)	973, 1290, 1456, 1758, 1902
AjuI	GAANNNNNNNTTGG	4 cut(s)	1869, 1901, 2967, 2999
AleI	CACNNNNGTG	2 cut(s)	387, 2208
AloI	GAACNNNNNNTCC	2 cut(s)	2322, 2354
Alw21I	GWGCWC	5 cut(s)	226, 461, 797, 2302, 2547
Alw26I	GTCTC	3 cut(s)	763, 1599, 1608
Alw44I	GTGCAC	2 cut(s)	222, 457
AlwI	GGATC	4 cut(s)	414, 1256, 1526, 2864
Ama87I	CYCGRG	1 cut(s)	1798
AoxI	GGCC	7 cut(s)	71, 261, 391, 594, 602, 2020, 2492
ApaLI	GTGCAC	2 cut(s)	222, 457
ApeKI	GCWGC	4 cut(s)	233, 1047, 2150, 2462
ApoI	RAATTY	7 cut(s)	450, 1004, 1089, 1346, 1793, 2156, 2566
Asp700I	GAANNNNTTC	2 cut(s)	2034, 2979
AspA2I	CCTAGG	1 cut(s)	1535
AspLEI	GCGC	3 cut(s)	141, 1113, 1814
AspS9I	GGNCC	5 cut(s)	594, 2021, 2069, 2318, 2492
AsuC2I	CCSGG	3 cut(s)	828, 1649, 2781
AsuHPI	GGTGA	5 cut(s)	452, 1193, 1271, 1483, 2587
AsuNHI	GCTAGC	1 cut(s)	1669
AvaI	CYCGRG	1 cut(s)	1798
AvaII	GGWCC	2 cut(s)	2069, 2318
AvrII	CCTAGG	1 cut(s)	1535
AxyI	CCTNAGG	1 cut(s)	1983
BaeGI	GKGCMC	2 cut(s)	226, 461
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	2 cut(s)	1805, 2277
BauI	CACGAG	1 cut(s)	2301
BbsI	GAAGAC	1 cut(s)	2106
Bbv12I	GWGCWC	5 cut(s)	226, 461, 797, 2302, 2547
BbvCI	CCTCAGC	2 cut(s)	1083, 1524
BbvI	GCAGC	4 cut(s)	245, 1059, 2137, 2449
BceAI	ACGGC	2 cut(s)	1062, 2657
BcgI	CGANNNNNNTGC	2 cut(s)	1473, 1507
BciT130I	CCWGG	5 cut(s)	975, 1292, 1458, 1760, 1904
BciVI	GTATCC	1 cut(s)	1092
BclI	TGATCA	1 cut(s)	2577
BcnI	CCSGG	3 cut(s)	828, 1649, 2781
BcoDI	GTCTC	3 cut(s)	763, 1599, 1608
BfmI	CTRYAG	7 cut(s)	12, 578, 735, 1045, 1321, 1807, 2865
BfoI	RGCGCY	1 cut(s)	142
BfrI	CTTAAG	1 cut(s)	434
BfuAI	ACCTGC	2 cut(s)	1045, 2872
BfuI	GTATCC	1 cut(s)	1092
BisI	GCNGC	4 cut(s)	234, 1048, 2151, 2463
BlnI	CCTAGG	1 cut(s)	1535
BlpI	GCTNAGC	1 cut(s)	2458
BlsI	GCNGC	4 cut(s)	235, 1049, 2152, 2464
BmcAI	AGTACT	1 cut(s)	995
Bme1390I	CCNGG	8 cut(s)	828, 975, 1292, 1458, 1649, 1760, 1904, 2781
Bme18I	GGWCC	2 cut(s)	2069, 2318
BmeT110I	CYCGRG	1 cut(s)	1798
BmgT120I	GGNCC	5 cut(s)	594, 2021, 2069, 2318, 2492
BmiI	GGNNCC	5 cut(s)	33, 1378, 1580, 2071, 2800
BmrFI	CCNGG	8 cut(s)	828, 975, 1292, 1458, 1649, 1760, 1904, 2781
BmrI	ACTGGG	1 cut(s)	2073
BmsI	GCATC	4 cut(s)	931, 1048, 1325, 1380
BmtI	GCTAGC	1 cut(s)	1673
BmuI	ACTGGG	1 cut(s)	2073
BpiI	GAAGAC	1 cut(s)	2106
BplI	GAGNNNNNCTC	2 cut(s)	2790, 2822
Bpu10I	CCTNAGC	4 cut(s)	314, 1083, 1106, 1524
Bpu1102I	GCTNAGC	1 cut(s)	2458
BpuEI	CTTGAG	2 cut(s)	11, 386
BpuMI	CCSGG	3 cut(s)	828, 1649, 2781
BsaAI	YACGTR	1 cut(s)	2210
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	8 cut(s)	40, 974, 1290, 1457, 1535, 1648, 2277, 2930
BsaWI	WCCGGW	2 cut(s)	2320, 2572
BsaXI	ACNNNNNCTCC	8 cut(s)	583, 613, 1686, 1716, 2322, 2352, 2591, 2621
Bsc4I	CCNNNNNNNGG	8 cut(s)	41, 1084, 1291, 1463, 1841, 2236, 2327, 2525
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	3 cut(s)	1261, 1561, 2079
Bse21I	CCTNAGG	1 cut(s)	1983
Bse3DI	GCAATG	2 cut(s)	1120, 2800
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	5 cut(s)	975, 1292, 1458, 1760, 1904
BseDI	CCNNGG	8 cut(s)	40, 974, 1290, 1457, 1535, 1648, 2277, 2930
BseGI	GGATG	5 cut(s)	689, 792, 1432, 2440, 2485
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	8 cut(s)	41, 1084, 1291, 1463, 1841, 2236, 2327, 2525
BseMI	GCAATG	2 cut(s)	1120, 2800
BseMII	CTCAG	7 cut(s)	263, 1074, 1120, 1515, 1974, 2472, 2595
BseNI	ACTGG	3 cut(s)	1261, 1561, 2079
BseRI	GAGGAG	1 cut(s)	2612
BseSI	GKGCMC	2 cut(s)	226, 461
BseXI	GCAGC	4 cut(s)	245, 1059, 2137, 2449
BseYI	CCCAGC	2 cut(s)	109, 2489
Bsh1285I	CGRYCG	1 cut(s)	601
BshFI	GGCC	7 cut(s)	73, 263, 393, 596, 604, 2022, 2494
BshNI	GGYRCC	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	601
BsiHKAI	GWGCWC	5 cut(s)	226, 461, 797, 2302, 2547
BsiHKCI	CYCGRG	1 cut(s)	1798
BsiSI	CCGG	6 cut(s)	597, 828, 1648, 2321, 2573, 2781
BslFI	GGGAC	1 cut(s)	2055
BslI	CCNNNNNNNGG	8 cut(s)	41, 1084, 1291, 1463, 1841, 2236, 2327, 2525
BsmAI	GTCTC	3 cut(s)	763, 1599, 1608
BsmFI	GGGAC	1 cut(s)	2055
BsmI	GAATGC	2 cut(s)	1649, 2776
BsnI	GGCC	7 cut(s)	73, 263, 393, 596, 604, 2022, 2494
BsoBI	CYCGRG	1 cut(s)	1798
Bsp1286I	GDGCHC	7 cut(s)	226, 461, 797, 1805, 2277, 2302, 2547
Bsp1407I	TGTACA	1 cut(s)	895
Bsp1720I	GCTNAGC	1 cut(s)	2458
BspACI	CCGC	2 cut(s)	17, 192
BspANI	GGCC	7 cut(s)	73, 263, 393, 596, 604, 2022, 2494
BspCNI	CTCAG	7 cut(s)	262, 1075, 1119, 1516, 1975, 2471, 2596
BspHI	TCATGA	4 cut(s)	636, 1273, 1771, 2134
BspLI	GGNNCC	5 cut(s)	33, 1378, 1580, 2071, 2800
BspMAI	CTGCAG	3 cut(s)	739, 1049, 2869
BspMI	ACCTGC	2 cut(s)	1045, 2872
BspOI	GCTAGC	1 cut(s)	1673
BspPI	GGATC	4 cut(s)	414, 1256, 1526, 2864
BspQI	GCTCTTC	1 cut(s)	1068
BspT107I	GGYRCC	1 cut(s)	31
BspTI	CTTAAG	1 cut(s)	434
BsrBI	CCGCTC	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	1120, 2800
BsrFI	RCCGGY	1 cut(s)	596
BsrGI	TGTACA	1 cut(s)	895
BsrI	ACTGG	3 cut(s)	1261, 1561, 2079
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	8 cut(s)	40, 974, 1290, 1457, 1535, 1648, 2277, 2930
BssSI	CACGAG	1 cut(s)	2301
BssT1I	CCWWGG	4 cut(s)	40, 1535, 2277, 2930
Bst2BI	CACGAG	1 cut(s)	2301
Bst2UI	CCWGG	5 cut(s)	975, 1292, 1458, 1760, 1904
Bst6I	CTCTTC	3 cut(s)	640, 1068, 1977
BstAFI	CTTAAG	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	895
BstBAI	YACGTR	1 cut(s)	2210
BstC8I	GCNNGC	2 cut(s)	1671, 2878
BstDEI	CTNAG	9 cut(s)	249, 314, 1083, 1106, 1524, 1983, 2458, 2562, 2604
BstENI	CCTNNNNNAGG	3 cut(s)	39, 1289, 2523
BstF5I	GGATG	5 cut(s)	689, 792, 1432, 2440, 2485
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	3 cut(s)	141, 1113, 1814
BstMAI	GTCTC	3 cut(s)	763, 1599, 1608
BstMCI	CGRYCG	1 cut(s)	601
BstMWI	GCNNNNNNNGC	8 cut(s)	31, 79, 230, 310, 1201, 1317, 1809, 2873
BstNI	CCWGG	5 cut(s)	975, 1292, 1458, 1760, 1904
BstNSI	RCATGY	1 cut(s)	2824
BstSCI	CCNGG	8 cut(s)	826, 973, 1290, 1456, 1647, 1758, 1902, 2779
BstSFI	CTRYAG	7 cut(s)	12, 578, 735, 1045, 1321, 1807, 2865
BstSLI	GKGCMC	2 cut(s)	226, 461
BstV1I	GCAGC	4 cut(s)	245, 1059, 2137, 2449
BstV2I	GAAGAC	1 cut(s)	2106
BstX2I	RGATCY	1 cut(s)	2869
BstYI	RGATCY	1 cut(s)	2869
Bsu36I	CCTNAGG	1 cut(s)	1983
BsuI	GTATCC	1 cut(s)	1092
BsuRI	GGCC	7 cut(s)	73, 263, 393, 596, 604, 2022, 2494
BtsCI	GGATG	5 cut(s)	689, 792, 1432, 2440, 2485
BtsI	GCAGTG	4 cut(s)	343, 572, 1680, 2935
BtsIMutI	CAGTG	9 cut(s)	9, 343, 572, 1143, 1554, 1679, 1680, 2880, 2935
BveI	ACCTGC	2 cut(s)	1045, 2872
Cac8I	GCNNGC	2 cut(s)	1671, 2878
CciI	TCATGA	4 cut(s)	636, 1273, 1771, 2134
CfoI	GCGC	3 cut(s)	141, 1113, 1814
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	5 cut(s)	594, 2021, 2069, 2318, 2492
CsiI	ACCWGGT	1 cut(s)	1758
Csp6I	GTAC	3 cut(s)	896, 994, 2924
CspCI	CAANNNNNGTGG	2 cut(s)	2865, 2900
CviQI	GTAC	3 cut(s)	896, 994, 2924
DdeI	CTNAG	9 cut(s)	249, 314, 1083, 1106, 1524, 1983, 2458, 2562, 2604
DrdI	GACNNNNNNGTC	1 cut(s)	2510
DseDI	GACNNNNNNGTC	1 cut(s)	2510
EaeI	YGGCCR	1 cut(s)	602
Eam1104I	CTCTTC	3 cut(s)	640, 1068, 1977
EarI	CTCTTC	3 cut(s)	640, 1068, 1977
Eco130I	CCWWGG	4 cut(s)	40, 1535, 2277, 2930
Eco147I	AGGCCT	1 cut(s)	73
Eco24I	GRGCYC	2 cut(s)	1805, 2277
Eco32I	GATATC	2 cut(s)	163, 2836
Eco47I	GGWCC	2 cut(s)	2069, 2318
Eco57I	CTGAAG	3 cut(s)	1685, 2127, 2379
Eco81I	CCTNAGG	1 cut(s)	1983
Eco88I	CYCGRG	1 cut(s)	1798
EcoNI	CCTNNNNNAGG	3 cut(s)	39, 1289, 2523
EcoRI	GAATTC	1 cut(s)	1793
EcoRII	CCWGG	5 cut(s)	973, 1290, 1456, 1758, 1902
EcoRV	GATATC	2 cut(s)	163, 2836
EcoT14I	CCWWGG	4 cut(s)	40, 1535, 2277, 2930
EcoT22I	ATGCAT	1 cut(s)	1340
EcoT38I	GRGCYC	2 cut(s)	1805, 2277
ErhI	CCWWGG	4 cut(s)	40, 1535, 2277, 2930
FalI	AAGNNNNNCTT	4 cut(s)	307, 339, 1047, 1079
FaqI	GGGAC	1 cut(s)	2055
FauNDI	CATATG	3 cut(s)	879, 1307, 1573
FbaI	TGATCA	1 cut(s)	2577
FblI	GTMKAC	2 cut(s)	549, 1159
Fnu4HI	GCNGC	4 cut(s)	234, 1048, 2151, 2463
FokI	GGATG	5 cut(s)	696, 799, 1439, 2427, 2492
FriOI	GRGCYC	2 cut(s)	1805, 2277
Fsp4HI	GCNGC	4 cut(s)	234, 1048, 2151, 2463
GlaI	GCGC	3 cut(s)	140, 1112, 1813
GluI	GCNGC	4 cut(s)	234, 1048, 2151, 2463
GsaI	CCCAGC	2 cut(s)	113, 2493
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	7 cut(s)	73, 263, 393, 596, 604, 2022, 2494
HapII	CCGG	6 cut(s)	597, 828, 1648, 2321, 2573, 2781
HhaI	GCGC	3 cut(s)	141, 1113, 1814
Hin6I	GCGC	3 cut(s)	139, 1111, 1812
HinP1I	GCGC	3 cut(s)	139, 1111, 1812
HincII	GTYRAC	2 cut(s)	1160, 2946
HindII	GTYRAC	2 cut(s)	1160, 2946
HindIII	AAGCTT	3 cut(s)	321, 1124, 2312
HpaII	CCGG	6 cut(s)	597, 828, 1648, 2321, 2573, 2781
HphI	GGTGA	5 cut(s)	452, 1193, 1271, 1483, 2587
Hpy166II	GTNNAC	7 cut(s)	224, 459, 550, 658, 896, 1160, 2946
Hpy8I	GTNNAC	7 cut(s)	224, 459, 550, 658, 896, 1160, 2946
Hpy99I	CGWCG	1 cut(s)	2050
HpyAV	CCTTC	3 cut(s)	152, 1474, 2012
HpyCH4IV	ACGT	3 cut(s)	2209, 2296, 2472
HpyF10VI	GCNNNNNNNGC	8 cut(s)	31, 79, 230, 310, 1201, 1317, 1809, 2873
HpyF3I	CTNAG	9 cut(s)	249, 314, 1083, 1106, 1524, 1983, 2458, 2562, 2604
HpySE526I	ACGT	3 cut(s)	2209, 2296, 2472
HspAI	GCGC	3 cut(s)	139, 1111, 1812
Ksp22I	TGATCA	1 cut(s)	2577
LguI	GCTCTTC	1 cut(s)	1068
LmnI	GCTCC	5 cut(s)	724, 1376, 1906, 2750, 2798
Lsp1109I	GCAGC	4 cut(s)	245, 1059, 2137, 2449
LweI	GCATC	4 cut(s)	931, 1048, 1325, 1380
MabI	ACCWGGT	1 cut(s)	1758
MaeII	ACGT	3 cut(s)	2209, 2296, 2472
MaeIII	GTNAC	9 cut(s)	338, 915, 1181, 1471, 1515, 1552, 1675, 2179, 2816
MbiI	CCGCTC	1 cut(s)	194
MfeI	CAATTG	2 cut(s)	704, 2919
MflI	RGATCY	1 cut(s)	2869
MhlI	GDGCHC	7 cut(s)	226, 461, 797, 1805, 2277, 2302, 2547
MlyI	GAGTC	5 cut(s)	555, 1523, 1601, 2096, 2615
MmeI	TCCRAC	1 cut(s)	2935
Mph1103I	ATGCAT	1 cut(s)	1340
MroXI	GAANNNNTTC	2 cut(s)	2034, 2979
MslI	CAYNNNNRTG	5 cut(s)	331, 387, 663, 2139, 2208
MspA1I	CMGCKG	1 cut(s)	2462
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	6 cut(s)	597, 828, 1648, 2321, 2573, 2781
MspR9I	CCNGG	8 cut(s)	828, 975, 1292, 1458, 1649, 1760, 1904, 2781
MunI	CAATTG	2 cut(s)	704, 2919
Mva1269I	GAATGC	2 cut(s)	1649, 2776
MvaI	CCWGG	5 cut(s)	975, 1292, 1458, 1760, 1904
MwoI	GCNNNNNNNGC	8 cut(s)	31, 79, 230, 310, 1201, 1317, 1809, 2873
NciI	CCSGG	3 cut(s)	828, 1649, 2781
NdeI	CATATG	3 cut(s)	879, 1307, 1573
NheI	GCTAGC	1 cut(s)	1669
NlaIV	GGNNCC	5 cut(s)	33, 1378, 1580, 2071, 2800
NmuCI	GTSAC	8 cut(s)	338, 915, 1181, 1471, 1515, 1552, 1675, 2179
NsiI	ATGCAT	1 cut(s)	1340
NspI	RCATGY	1 cut(s)	2824
OliI	CACNNNNGTG	2 cut(s)	387, 2208
PaeR7I	CTCGAG	1 cut(s)	1798
PagI	TCATGA	4 cut(s)	636, 1273, 1771, 2134
PaqCI	CACCTGC	1 cut(s)	1045
PceI	AGGCCT	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	1068
PctI	GAATGC	2 cut(s)	1649, 2776
PdmI	GAANNNNTTC	2 cut(s)	2034, 2979
PfeI	GAWTC	5 cut(s)	483, 670, 698, 823, 2851
PflMI	CCANNNNNTGG	1 cut(s)	1463
PfoI	TCCNGGA	2 cut(s)	826, 2779
PkrI	GCNGC	4 cut(s)	235, 1049, 2152, 2464
PleI	GAGTC	5 cut(s)	554, 1522, 1600, 2096, 2614
PpsI	GAGTC	5 cut(s)	554, 1522, 1600, 2096, 2614
Ppu21I	YACGTR	1 cut(s)	2210
PsiI	TTATAA	1 cut(s)	632
Psp6I	CCWGG	5 cut(s)	973, 1290, 1456, 1758, 1902
PspFI	CCCAGC	2 cut(s)	109, 2489
PspGI	CCWGG	5 cut(s)	973, 1290, 1456, 1758, 1902
PspN4I	GGNNCC	5 cut(s)	33, 1378, 1580, 2071, 2800
PspPI	GGNCC	5 cut(s)	594, 2021, 2069, 2318, 2492
PstI	CTGCAG	3 cut(s)	739, 1049, 2869
PsuI	RGATCY	1 cut(s)	2869
PvuII	CAGCTG	1 cut(s)	2462
RsaI	GTAC	3 cut(s)	897, 995, 2925
RsaNI	GTAC	3 cut(s)	896, 994, 2924
RseI	CAYNNNNRTG	5 cut(s)	331, 387, 663, 2139, 2208
SalI	GTCGAC	1 cut(s)	1158
SapI	GCTCTTC	1 cut(s)	1068
SatI	GCNGC	4 cut(s)	234, 1048, 2151, 2463
Sau96I	GGNCC	5 cut(s)	594, 2021, 2069, 2318, 2492
ScaI	AGTACT	1 cut(s)	995
SchI	GAGTC	5 cut(s)	555, 1523, 1601, 2096, 2615
ScrFI	CCNGG	8 cut(s)	828, 975, 1292, 1458, 1649, 1760, 1904, 2781
SduI	GDGCHC	7 cut(s)	226, 461, 797, 1805, 2277, 2302, 2547
SexAI	ACCWGGT	1 cut(s)	1758
SfaNI	GCATC	4 cut(s)	931, 1048, 1325, 1380
SfcI	CTRYAG	7 cut(s)	12, 578, 735, 1045, 1321, 1807, 2865
Sfr274I	CTCGAG	1 cut(s)	1798
SinI	GGWCC	2 cut(s)	2069, 2318
SlaI	CTCGAG	1 cut(s)	1798
SmiMI	CAYNNNNRTG	5 cut(s)	331, 387, 663, 2139, 2208
SmlI	CTYRAG	4 cut(s)	26, 401, 434, 1798
SmoI	CTYRAG	4 cut(s)	26, 401, 434, 1798
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	2 cut(s)	17, 192
SspI	AATATT	3 cut(s)	176, 2538, 2766
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	8 cut(s)	826, 973, 1290, 1456, 1647, 1758, 1902, 2779
StyI	CCWWGG	4 cut(s)	40, 1535, 2277, 2930
TaiI	ACGT	3 cut(s)	2212, 2299, 2475
TaqII	GACCGA	1 cut(s)	579
TatI	WGTACW	2 cut(s)	895, 993
TfiI	GAWTC	5 cut(s)	483, 670, 698, 823, 2851
TscAI	CASTG	9 cut(s)	16, 343, 579, 1150, 1561, 1680, 1686, 2887, 2942
TseFI	GTSAC	8 cut(s)	338, 915, 1181, 1471, 1515, 1552, 1675, 2179
TseI	GCWGC	4 cut(s)	233, 1047, 2150, 2462
Tsp45I	GTSAC	8 cut(s)	338, 915, 1181, 1471, 1515, 1552, 1675, 2179
TspGWI	ACGGA	1 cut(s)	737
TspRI	CASTG	9 cut(s)	16, 343, 579, 1150, 1561, 1680, 1686, 2887, 2942
Van91I	CCANNNNNTGG	1 cut(s)	1463
Vha464I	CTTAAG	1 cut(s)	434
VneI	GTGCAC	2 cut(s)	222, 457
VpaK11BI	GGWCC	2 cut(s)	2069, 2318
XagI	CCTNNNNNAGG	3 cut(s)	39, 1289, 2523
XapI	RAATTY	7 cut(s)	450, 1004, 1089, 1346, 1793, 2156, 2566
XbaI	TCTAGA	1 cut(s)	2092
XceI	RCATGY	1 cut(s)	2824
XhoI	CTCGAG	1 cut(s)	1798
XmaJI	CCTAGG	1 cut(s)	1535
XmiI	GTMKAC	2 cut(s)	549, 1159
XmnI	GAANNNNTTC	2 cut(s)	2034, 2979
ZrmI	AGTACT	1 cut(s)	995
Zsp2I	ATGCAT	1 cut(s)	1340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.