Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003102

Physical Location & Seq

Genomic Coordinates Forward (+)

951161 .. 955841

Gene Structure 4681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01670.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTGGAACTTGGGGGATTCCAAAGCTATGTCGTCAGCATTTCCGAATCTCCCTACCCCCCTTGATGTCAGTTACTCCAGATTGCCAGATTCTTTTCATCGTTCCGCACAAAGAGAAAACCCTATGCATTCATTGTTACCGCAGCCTTCTTCCCTTGGGAACTCATATTCATCATCGTCCAGTCTCCCCTTTGACAGTCAGTTTTCTTCAGTTTACCCTCATGAAAGATATCCCCAAAATTCTCCAATCAGTATGTCACCAAGTGGTGGAAAATCATTGTCACATACCCATTCAGAGTTACAATCTACGCCAGTGGCTAGTTACCCTGAAGAAAATAAAGATATGTCCTGGTGCCCAGATTCAATTGAAGAGTTTCTGCATTTTCCTGAAAATGTCCCTGATCAGAATGGCCTGGTAGATACTAGTACTGGTGCAATAATATCCGACGATCACGCTGAAAGGACTGATTGGTCTGACTTGTATCCATTAATTTCTTTTGATGGTGCTCTGGATTCAAATTGGGAGCTTTCAGTTGATAATGTGGTGGATCCTAAACCGGAGCCAAATATCCAACAACATCAGCCAGCACAATCTGGAGAGATTTTCACTAGCCCTGACCCAGAGTCCACTGCACCTTCAACCAAAGCTAGAATGCGTTGGACACAAGAACTTCATGAGGCTTTTGTTGAAGCTGTCAACCAGCTTGGTGGTAGTGATAGAGCCACTCCTAAGGGTATCTTAAATGTCATGAAGGTTGAAGGCTTGACAATTTATCATGTAAAAAGTCATTTACAGAAATATAGAACAGCCAAATACAAACCGGAGTCATCAGAAGGTGCTTGTGAGAAGAATCTGACTCCTGTTGAAGAAATGAATTCTAAAGACTTGAAAACGAGCAGTATGGGGATGACTGAAGCATTGAGATTGCAGGTAGAACTCCAGAAGCAGCTTCATGAGCAACTTGAGACTCAAAGAAAGTTGCAGTTGCAAATTGAGGAACAAGCAAAGTACCTTGAAAAGATGTTTGAGCAACAAAGGAAGATGGAAGACAACAAGGTCAAGCCGACATCGTCTACCTCAGATGAGCGTAACAAAATAGGAACCAGCACTCCTATGGATGAAGGTTCACAAGATGCAAGTTTGAAACAGAATGCTCAAGAACCTGCAACTCATGAGAATCATGATCCCCCAGGTGATGCTGATTCTGGTGCTCTACCCACAAAACGAGCAAGGACAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

414

Amino Acids

46.03

Weight (kDa)

5.05

Isoelectric Point (pI)

62.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	229 - 280	9.9e-10	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	313 - 358	3.9e-17	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04450 AT3G04450 AT3G04450 AT3G04450 AT5G29000 AT5G29000 AT5G29000 AT5G29000
fragaria_vesca	FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670
malus_domestica	MD04G1231600.v1.1 MD12G1249600.v1.1
prunus_persica	Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1
pyrus_communis	pycom04g20490 pycom12g22940
rosa_chinensis	RchiOBHm_Chr3g0449471
rosa_laevigata	RLG00000025828
rosa_multiflora	Rmu_sc0019012.1_g000004
rosa_roxburghii	Rroxscaffold_6G00427420
rosa_rugosa	Rorug02G0621100 Rorug02G0621200 Rorug02G0621300
rosa_samantha	Rh3AG018800 Rh3AG019400 Rh3BG019200 Rh3CG018100 Rh3DG019400
rosa_wichuraiana	Rw3G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	469, 1055
Acc36I	ACCTGC	2 cut(s)	919, 1171
AccB1I	GGYRCC	1 cut(s)	351
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	1073
AciI	CCGC	2 cut(s)	105, 140
AclWI	GGATC	3 cut(s)	542, 555, 1178
AcsI	RAATTY	2 cut(s)	238, 874
AcuI	CTGAAG	3 cut(s)	192, 348, 933
AdeI	CACNNNGTG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	427, 1010
AfiI	CCNNNNNNNGG	1 cut(s)	266
AhdI	GACNNNNNGTC	1 cut(s)	622
AhlI	ACTAGT	1 cut(s)	422
AjnI	CCWGG	3 cut(s)	347, 411, 1189
AloI	GAACNNNNNNTCC	2 cut(s)	1093, 1125
AluBI	AGCT	6 cut(s)	26, 526, 647, 692, 703, 949
AluI	AGCT	6 cut(s)	26, 526, 647, 692, 703, 949
Alw21I	GWGCWC	2 cut(s)	508, 1213
Alw26I	GTCTC	2 cut(s)	188, 959
AlwI	GGATC	3 cut(s)	542, 555, 1178
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	2 cut(s)	142, 946
ApoI	RAATTY	2 cut(s)	238, 874
AseI	ATTAAT	1 cut(s)	488
Asp700I	GAANNNNTTC	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	249, 1205
AxyI	CCTNAGG	1 cut(s)	729
BaeGI	GKGCMC	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	1053
Bbv12I	GWGCWC	2 cut(s)	508, 1213
BbvI	GCAGC	2 cut(s)	154, 958
BccI	CCATC	2 cut(s)	494, 1036
BciT130I	CCWGG	3 cut(s)	349, 413, 1191
BciVI	GTATCC	1 cut(s)	492
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	188, 959
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	4 cut(s)	318, 423, 609, 648
BfuAI	ACCTGC	2 cut(s)	919, 1171
BfuI	GTATCC	1 cut(s)	492
BisI	GCNGC	2 cut(s)	143, 947
BlsI	GCNGC	2 cut(s)	144, 948
BmcAI	AGTACT	1 cut(s)	427
Bme1390I	CCNGG	3 cut(s)	349, 413, 1191
BmeRI	GACNNNNNGTC	1 cut(s)	622
BmiI	GGNNCC	4 cut(s)	353, 549, 561, 1102
BmrFI	CCNGG	3 cut(s)	349, 413, 1191
BmsI	GCATC	2 cut(s)	1123, 1186
BpiI	GAAGAC	1 cut(s)	1053
BpmI	CTGGAG	3 cut(s)	61, 615, 923
BpuEI	CTTGAG	2 cut(s)	983, 1140
BsaJI	CCNNGG	2 cut(s)	154, 1189
BsaWI	WCCGGW	2 cut(s)	556, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	1093, 1123
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	3 cut(s)	180, 311, 433
Bse21I	CCTNAGG	1 cut(s)	729
BseBI	CCWGG	3 cut(s)	349, 413, 1191
BseDI	CCNNGG	2 cut(s)	154, 1189
BseGI	GGATG	2 cut(s)	912, 1123
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	1092
BseNI	ACTGG	3 cut(s)	180, 311, 433
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	154, 958
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	411
BshNI	GGYRCC	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	508, 1213
BsiSI	CCGG	2 cut(s)	557, 821
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	188, 959
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	3 cut(s)	127, 657, 1156
BsnI	GGCC	1 cut(s)	411
Bsp1286I	GDGCHC	3 cut(s)	356, 508, 1213
Bsp143I	GATC	4 cut(s)	400, 448, 547, 1183
BspACI	CCGC	2 cut(s)	105, 140
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	1 cut(s)	1091
BspHI	TCATGA	6 cut(s)	220, 673, 747, 952, 1171, 1180
BspLI	GGNNCC	4 cut(s)	353, 549, 561, 1102
BspMI	ACCTGC	2 cut(s)	919, 1171
BspPI	GGATC	3 cut(s)	542, 555, 1178
BspT107I	GGYRCC	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	180, 311, 433
BssECI	CCNNGG	2 cut(s)	154, 1189
BssMI	GATC	4 cut(s)	400, 448, 547, 1183
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	3 cut(s)	349, 413, 1191
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	2 cut(s)	729, 1078
BstF5I	GGATG	2 cut(s)	912, 1123
BstKTI	GATC	4 cut(s)	403, 451, 550, 1186
BstMAI	GTCTC	2 cut(s)	188, 959
BstMBI	GATC	4 cut(s)	400, 448, 547, 1183
BstMWI	GCNNNNNNNGC	1 cut(s)	955
BstNI	CCWGG	3 cut(s)	349, 413, 1191
BstSCI	CCNGG	3 cut(s)	347, 411, 1189
BstSLI	GKGCMC	1 cut(s)	356
BstV1I	GCAGC	2 cut(s)	154, 958
BstV2I	GAAGAC	1 cut(s)	1053
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	547
Bsu36I	CCTNAGG	1 cut(s)	729
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	1 cut(s)	411
BtsCI	GGATG	2 cut(s)	912, 1123
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	2 cut(s)	318, 627
BveI	ACCTGC	2 cut(s)	919, 1171
Cac8I	GCNNGC	1 cut(s)	585
CciI	TCATGA	6 cut(s)	220, 673, 747, 952, 1171, 1180
Csp6I	GTAC	2 cut(s)	426, 1009
CviAII	CATG	7 cut(s)	221, 674, 748, 776, 953, 1172, 1181
CviQI	GTAC	2 cut(s)	426, 1009
DdeI	CTNAG	2 cut(s)	729, 1078
DpnI	GATC	4 cut(s)	402, 450, 549, 1185
DpnII	GATC	4 cut(s)	400, 448, 547, 1183
DraIII	CACNNNGTG	1 cut(s)	263
DrdI	GACNNNNNNGTC	2 cut(s)	469, 1055
DriI	GACNNNNNGTC	1 cut(s)	622
DseDI	GACNNNNNNGTC	2 cut(s)	469, 1055
Eam1104I	CTCTTC	1 cut(s)	363
Eam1105I	GACNNNNNGTC	1 cut(s)	622
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	230
Eco57I	CTGAAG	3 cut(s)	192, 348, 933
Eco81I	CCTNAGG	1 cut(s)	729
EcoRI	GAATTC	1 cut(s)	874
EcoRII	CCWGG	3 cut(s)	347, 411, 1189
EcoRV	GATATC	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	7 cut(s)	224, 677, 751, 779, 956, 1175, 1184
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	7 cut(s)	220, 673, 747, 775, 952, 1171, 1180
FbaI	TGATCA	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	1073
Fnu4HI	GCNGC	2 cut(s)	143, 947
FokI	GGATG	2 cut(s)	919, 1130
Fsp4HI	GCNGC	2 cut(s)	143, 947
FspBI	CTAG	4 cut(s)	318, 423, 609, 648
GluI	GCNGC	2 cut(s)	143, 947
GsuI	CTGGAG	3 cut(s)	61, 615, 923
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	2 cut(s)	557, 821
Hin1II	CATG	7 cut(s)	224, 677, 751, 779, 956, 1175, 1184
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HpaII	CCGG	2 cut(s)	557, 821
HphI	GGTGA	2 cut(s)	249, 1205
Hpy166II	GTNNAC	5 cut(s)	214, 627, 697, 1074, 1127
Hpy188I	TCNGA	8 cut(s)	45, 295, 405, 445, 475, 832, 855, 1081
Hpy8I	GTNNAC	5 cut(s)	214, 627, 697, 1074, 1127
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	6 cut(s)	156, 645, 745, 752, 827, 1115
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	9 cut(s)	127, 379, 434, 632, 928, 982, 988, 1136, 1166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	955
HpyF3I	CTNAG	2 cut(s)	729, 1078
Hsp92II	CATG	7 cut(s)	224, 677, 751, 779, 956, 1175, 1184
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	4 cut(s)	400, 448, 547, 1183
LmnI	GCTCC	2 cut(s)	523, 559
Lsp1109I	GCAGC	2 cut(s)	154, 958
LweI	GCATC	2 cut(s)	1123, 1186
MaeI	CTAG	4 cut(s)	318, 423, 609, 648
MaeIII	GTNAC	7 cut(s)	71, 135, 255, 279, 297, 320, 1088
MalI	GATC	4 cut(s)	402, 450, 549, 1185
MboI	GATC	4 cut(s)	400, 448, 547, 1183
MboII	GAAGA	8 cut(s)	141, 198, 341, 380, 859, 878, 1051, 1058
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	3 cut(s)	356, 508, 1213
MluCI	AATT	7 cut(s)	238, 363, 489, 517, 768, 874, 990
MlyI	GAGTC	4 cut(s)	632, 833, 850, 961
MmeI	TCCRAC	3 cut(s)	468, 595, 638
MnlI	CCTC	4 cut(s)	228, 670, 988, 1087
Mph1103I	ATGCAT	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	2 cut(s)	488, 740
MslI	CAYNNNNRTG	1 cut(s)	1112
MspI	CCGG	2 cut(s)	557, 821
MspR9I	CCNGG	3 cut(s)	349, 413, 1191
MunI	CAATTG	1 cut(s)	363
Mva1269I	GAATGC	3 cut(s)	127, 657, 1156
MvaI	CCWGG	3 cut(s)	349, 413, 1191
MwoI	GCNNNNNNNGC	1 cut(s)	955
NdeII	GATC	4 cut(s)	400, 448, 547, 1183
NlaIII	CATG	7 cut(s)	224, 677, 751, 779, 956, 1175, 1184
NlaIV	GGNNCC	4 cut(s)	353, 549, 561, 1102
NmuCI	GTSAC	2 cut(s)	255, 279
NsiI	ATGCAT	1 cut(s)	129
PagI	TCATGA	6 cut(s)	220, 673, 747, 952, 1171, 1180
PctI	GAATGC	3 cut(s)	127, 657, 1156
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	8 cut(s)	17, 46, 89, 359, 512, 850, 1177, 1202
PflFI	GACNNNGTC	1 cut(s)	1069
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	144, 948
PleI	GAGTC	4 cut(s)	631, 832, 850, 961
PpsI	GAGTC	4 cut(s)	631, 832, 850, 961
PshBI	ATTAAT	1 cut(s)	488
Psp6I	CCWGG	3 cut(s)	347, 411, 1189
PspGI	CCWGG	3 cut(s)	347, 411, 1189
PspN4I	GGNNCC	4 cut(s)	353, 549, 561, 1102
PsuI	RGATCY	1 cut(s)	547
PsyI	GACNNNGTC	1 cut(s)	1069
RsaI	GTAC	2 cut(s)	427, 1010
RsaNI	GTAC	2 cut(s)	426, 1009
RseI	CAYNNNNRTG	1 cut(s)	1112
SaqAI	TTAA	2 cut(s)	488, 740
SatI	GCNGC	2 cut(s)	143, 947
Sau3AI	GATC	4 cut(s)	400, 448, 547, 1183
ScaI	AGTACT	1 cut(s)	427
SchI	GAGTC	4 cut(s)	632, 833, 850, 961
ScrFI	CCNGG	3 cut(s)	349, 413, 1191
SduI	GDGCHC	3 cut(s)	356, 508, 1213
SfaNI	GCATC	2 cut(s)	1123, 1186
SmiMI	CAYNNNNRTG	1 cut(s)	1112
SmlI	CTYRAG	2 cut(s)	962, 1155
SmoI	CTYRAG	2 cut(s)	962, 1155
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	7 cut(s)	238, 363, 489, 517, 768, 874, 990
SsiI	CCGC	2 cut(s)	105, 140
SspMI	CTAG	4 cut(s)	318, 423, 609, 648
StyD4I	CCNGG	3 cut(s)	347, 411, 1189
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	197
TasI	AATT	7 cut(s)	238, 363, 489, 517, 768, 874, 990
TatI	WGTACW	1 cut(s)	425
TfiI	GAWTC	8 cut(s)	17, 46, 89, 359, 512, 850, 1177, 1202
Tru1I	TTAA	2 cut(s)	488, 740
Tru9I	TTAA	2 cut(s)	488, 740
TscAI	CASTG	2 cut(s)	318, 634
TseFI	GTSAC	2 cut(s)	255, 279
TseI	GCWGC	2 cut(s)	142, 946
Tsp45I	GTSAC	2 cut(s)	255, 279
TspDTI	ATGAA	9 cut(s)	86, 120, 159, 237, 662, 764, 887, 941, 1134
TspRI	CASTG	2 cut(s)	318, 634
Tth111I	GACNNNGTC	1 cut(s)	1069
Van91I	CCANNNNNTGG	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	488
XapI	RAATTY	2 cut(s)	238, 874
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1111
XmiI	GTMKAC	1 cut(s)	1073
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	4 cut(s)	318, 423, 609, 648
ZrmI	AGTACT	1 cut(s)	427
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.