Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003102

Physical Location & Seq

Genomic Coordinates Forward (+)

1231498 .. 1234188

Gene Structure 2691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG019200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAGTAACTTGGGGACTTCCAAAGCTATGTCTTCAGCATTTCCACATCTCCCTGCCCCTCTTGATGTCAATTATTCCAGATTGCCAGATTCTTTTCAGGTTTCCGCACAAAGAGAAAAGCCTATGCATTCAATGTTACCACAGTCTTCTTCCCTTGGGAACTCATTTCCATCATCGTCCAGGCTTCCCTATGACAGTCAGATTTCTTCAGTTTGCCCTCATGAAAGACATTCCCAAATTTCTCCAATCAATAAGTTACCAAGTGGAGAATCACTGTCACTGACCCATTCACAGTTACAATCTACACCAGTGGCTAGTTACCCTGAGCAAACTAGAGATATTTCCTGGTGCCCAGATTCAATTCAGGAGTTTCTGCACTTTCCTGAAAATCTCCCTGATCAGAATGGCCTGGTAGATACTAGTACTGGTGTCATAATGTCTGATGATCATGCTGAAAAGACTGATTGGTCTGACTTGTATCCATTAATTTCTTTTGATGGTCCTCTGGATCCATATTGGGAGCTTTCGATTGATGATGTTCCAGCGGTGGATCCCAAACCGGAGGTGTTGAAGCATTGTTCTGATATCCCGGTGCAGCAGCCCGAGATTCAACAGCATCAGCCAGTACAATCTGGAGAAATTTTTACTAGCCCTGACCCAGTGTCCACTGCACCTTCAACCAAAGCTAGAATGCGTTGGACACAAGAACTTCATGAGGCCTTTGTTGAAGCTGTCAACCAGCTTGGTGGTAGTGAAAGAGCCACTCCTAAGGGTATCTTAAACGTCATGAAGGTTGAAAGCTTGACAATCTATCATGTAAAAAGCCATTTACAGAGTCAAAGAAAGTTGCAGTTGGAAATTGAGGAACAATCAAAGTACCTTGAAAAGATGTTTGAGCAACAAAGGAAGATGGAAGACAACAGGGTCAAGCCGACATCATCAACGTCAGATGAGCATAATAAAATAGGAACCAGCACTCCTGTCGATGAAGGTTCACAAGATGCAAGTATGAAACAGAAGGCACAAGAATCTGAAACTCATGATCCTCCAGGCGATGCCGATTCTGGTGATGTCCCCACAAAACGAGCAAGGACTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

366

Amino Acids

40.68

Weight (kDa)

5.06

Isoelectric Point (pI)

65.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	230 - 280	5.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04450 AT3G04450 AT3G04450 AT3G04450 AT5G29000 AT5G29000 AT5G29000 AT5G29000
fragaria_vesca	FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670
malus_domestica	MD04G1231600.v1.1 MD12G1249600.v1.1
prunus_persica	Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1
pyrus_communis	pycom04g20490 pycom12g22940
rosa_chinensis	RchiOBHm_Chr3g0449471
rosa_laevigata	RLG00000025828
rosa_multiflora	Rmu_sc0019012.1_g000004
rosa_roxburghii	Rroxscaffold_6G00427420
rosa_rugosa	Rorug02G0621100 Rorug02G0621200 Rorug02G0621300
rosa_samantha	Rh3AG018800 Rh3AG019400 Rh3BG019200 Rh3CG018100 Rh3DG019400
rosa_wichuraiana	Rw3G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	466, 923
AccB1I	GGYRCC	1 cut(s)	348
AciI	CCGC	2 cut(s)	105, 545
AclWI	GGATC	5 cut(s)	503, 516, 545, 558, 1037
AcsI	RAATTY	2 cut(s)	237, 639
AcuI	CTGAAG	2 cut(s)	18, 192
AfaI	GTAC	3 cut(s)	424, 627, 878
AgsI	TTSAA	8 cut(s)	132, 360, 571, 611, 678, 728, 797, 884
AhdI	GACNNNNNGTC	1 cut(s)	661
AhlI	ACTAGT	1 cut(s)	419
AjnI	CCWGG	4 cut(s)	179, 344, 408, 1048
AloI	GAACNNNNNNTCC	2 cut(s)	961, 993
AluBI	AGCT	6 cut(s)	26, 523, 686, 731, 742, 801
AluI	AGCT	6 cut(s)	26, 523, 686, 731, 742, 801
AlwI	GGATC	5 cut(s)	503, 516, 545, 558, 1037
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	406, 717
ApeKI	GCWGC	2 cut(s)	595, 598
ApoI	RAATTY	2 cut(s)	237, 639
AseI	ATTAAT	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	500
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	1079
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	768
BaeGI	GKGCMC	1 cut(s)	353
BamHI	GGATCC	2 cut(s)	508, 550
BanI	GGYRCC	1 cut(s)	348
BbsI	GAAGAC	3 cut(s)	24, 138, 921
BbvI	GCAGC	2 cut(s)	607, 610
BccI	CCATC	3 cut(s)	178, 491, 904
BcgI	CGANNNNNNTGC	2 cut(s)	964, 998
BciT130I	CCWGG	4 cut(s)	181, 346, 410, 1050
BciVI	GTATCC	1 cut(s)	489
BclI	TGATCA	2 cut(s)	397, 445
BcnI	CCSGG	1 cut(s)	590
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	5 cut(s)	315, 333, 420, 648, 687
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	2 cut(s)	596, 599
BlsI	GCNGC	2 cut(s)	597, 600
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	5 cut(s)	181, 346, 410, 590, 1050
Bme18I	GGWCC	1 cut(s)	500
BmeRI	GACNNNNNGTC	1 cut(s)	661
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	4 cut(s)	350, 510, 552, 970
BmrFI	CCNGG	5 cut(s)	181, 346, 410, 590, 1050
BmrI	ACTGGG	1 cut(s)	653
BmsI	GCATC	3 cut(s)	625, 991, 1045
BmuI	ACTGGG	1 cut(s)	653
BpiI	GAAGAC	3 cut(s)	24, 138, 921
BpmI	CTGGAG	2 cut(s)	654, 1032
Bpu10I	CCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	2 cut(s)	961, 991
Bse1I	ACTGG	5 cut(s)	308, 430, 623, 659, 1099
Bse21I	CCTNAGG	1 cut(s)	768
BseBI	CCWGG	4 cut(s)	181, 346, 410, 1050
BseDI	CCNNGG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	5 cut(s)	308, 430, 623, 659, 1099
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	607, 610
BsgI	GTGCAG	3 cut(s)	359, 614, 654
BshFI	GGCC	2 cut(s)	408, 719
BshNI	GGYRCC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	560, 590
BslFI	GGGAC	2 cut(s)	28, 1058
BsmFI	GGGAC	2 cut(s)	28, 1058
BsmI	GAATGC	2 cut(s)	127, 696
BsnI	GGCC	2 cut(s)	408, 719
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	5 cut(s)	397, 445, 508, 550, 1042
BspACI	CCGC	2 cut(s)	105, 545
BspANI	GGCC	2 cut(s)	408, 719
BspCNI	CTCAG	1 cut(s)	316
BspHI	TCATGA	4 cut(s)	220, 712, 786, 1039
BspLI	GGNNCC	4 cut(s)	350, 510, 552, 970
BspPI	GGATC	5 cut(s)	503, 516, 545, 558, 1037
BspT107I	GGYRCC	1 cut(s)	348
BsrI	ACTGG	5 cut(s)	308, 430, 623, 659, 1099
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	5 cut(s)	397, 445, 508, 550, 1042
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	4 cut(s)	181, 346, 410, 1050
Bst4CI	ACNGT	4 cut(s)	144, 197, 276, 294
BstDEI	CTNAG	2 cut(s)	324, 768
BstKTI	GATC	5 cut(s)	400, 448, 511, 553, 1045
BstMBI	GATC	5 cut(s)	397, 445, 508, 550, 1042
BstNI	CCWGG	4 cut(s)	181, 346, 410, 1050
BstSCI	CCNGG	5 cut(s)	179, 344, 408, 588, 1048
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	607, 610
BstV2I	GAAGAC	3 cut(s)	24, 138, 921
BstX2I	RGATCY	2 cut(s)	508, 550
BstXI	CCANNNNNNTGG	1 cut(s)	746
BstYI	RGATCY	2 cut(s)	508, 550
Bsu36I	CCTNAGG	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	408, 719
BtgZI	GCGATG	1 cut(s)	1068
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	5 cut(s)	272, 278, 315, 666, 666
CciI	TCATGA	4 cut(s)	220, 712, 786, 1039
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	3 cut(s)	423, 626, 877
CviAII	CATG	6 cut(s)	221, 449, 713, 787, 815, 1040
CviQI	GTAC	3 cut(s)	423, 626, 877
DdeI	CTNAG	2 cut(s)	324, 768
DpnI	GATC	5 cut(s)	399, 447, 510, 552, 1044
DpnII	GATC	5 cut(s)	397, 445, 508, 550, 1042
DrdI	GACNNNNNNGTC	2 cut(s)	466, 923
DriI	GACNNNNNGTC	1 cut(s)	661
DseDI	GACNNNNNNGTC	2 cut(s)	466, 923
Eam1105I	GACNNNNNGTC	1 cut(s)	661
Eco130I	CCWWGG	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	719
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	500
Eco57I	CTGAAG	2 cut(s)	18, 192
Eco81I	CCTNAGG	1 cut(s)	768
Eco88I	CYCGRG	1 cut(s)	602
EcoRII	CCWGG	4 cut(s)	179, 344, 408, 1048
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	6 cut(s)	224, 452, 716, 790, 818, 1043
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FaqI	GGGAC	2 cut(s)	28, 1058
FatI	CATG	6 cut(s)	220, 448, 712, 786, 814, 1039
FbaI	TGATCA	2 cut(s)	397, 445
Fnu4HI	GCNGC	2 cut(s)	596, 599
Fsp4HI	GCNGC	2 cut(s)	596, 599
FspBI	CTAG	5 cut(s)	315, 333, 420, 648, 687
GluI	GCNGC	2 cut(s)	596, 599
GsuI	CTGGAG	2 cut(s)	654, 1032
HaeIII	GGCC	2 cut(s)	408, 719
HapII	CCGG	2 cut(s)	560, 590
Hin1II	CATG	6 cut(s)	224, 452, 716, 790, 818, 1043
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	799
HinfI	GANTC	7 cut(s)	89, 269, 356, 607, 835, 1028, 1061
HpaII	CCGG	2 cut(s)	560, 590
HphI	GGTGA	1 cut(s)	1079
Hpy166II	GTNNAC	3 cut(s)	666, 736, 995
Hpy188I	TCNGA	7 cut(s)	201, 402, 442, 472, 583, 949, 1033
Hpy8I	GTNNAC	3 cut(s)	666, 736, 995
HpyAV	CCTTC	4 cut(s)	684, 784, 983, 1012
HpyCH4III	ACNGT	4 cut(s)	144, 197, 276, 294
HpyCH4IV	ACGT	2 cut(s)	783, 944
HpyCH4V	TGCA	6 cut(s)	127, 376, 595, 671, 850, 1004
HpyF3I	CTNAG	2 cut(s)	324, 768
HpySE526I	ACGT	2 cut(s)	783, 944
Hsp92II	CATG	6 cut(s)	224, 452, 716, 790, 818, 1043
Ksp22I	TGATCA	2 cut(s)	397, 445
Kzo9I	GATC	5 cut(s)	397, 445, 508, 550, 1042
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	2 cut(s)	607, 610
LweI	GCATC	3 cut(s)	625, 991, 1045
MaeI	CTAG	5 cut(s)	315, 333, 420, 648, 687
MaeII	ACGT	2 cut(s)	783, 944
MaeIII	GTNAC	6 cut(s)	5, 135, 255, 276, 294, 317
MalI	GATC	5 cut(s)	399, 447, 510, 552, 1044
MboI	GATC	5 cut(s)	397, 445, 508, 550, 1042
MboII	GAAGA	6 cut(s)	24, 138, 141, 198, 919, 926
MflI	RGATCY	2 cut(s)	508, 550
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	6 cut(s)	70, 237, 360, 486, 639, 858
MlyI	GAGTC	1 cut(s)	844
MmeI	TCCRAC	2 cut(s)	677, 834
MnlI	CCTC	7 cut(s)	69, 228, 513, 556, 709, 856, 1056
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	2 cut(s)	485, 779
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	2 cut(s)	560, 590
MspR9I	CCNGG	5 cut(s)	181, 346, 410, 590, 1050
Mva1269I	GAATGC	2 cut(s)	127, 696
MvaI	CCWGG	4 cut(s)	181, 346, 410, 1050
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	5 cut(s)	397, 445, 508, 550, 1042
NlaIII	CATG	6 cut(s)	224, 452, 716, 790, 818, 1043
NlaIV	GGNNCC	4 cut(s)	350, 510, 552, 970
NmuCI	GTSAC	1 cut(s)	276
NsiI	ATGCAT	1 cut(s)	129
PagI	TCATGA	4 cut(s)	220, 712, 786, 1039
PceI	AGGCCT	1 cut(s)	719
PctI	GAATGC	2 cut(s)	127, 696
PfeI	GAWTC	6 cut(s)	89, 269, 356, 607, 1028, 1061
PkrI	GCNGC	2 cut(s)	597, 600
PleI	GAGTC	1 cut(s)	843
PpsI	GAGTC	1 cut(s)	843
PshBI	ATTAAT	1 cut(s)	485
Psp6I	CCWGG	4 cut(s)	179, 344, 408, 1048
PspGI	CCWGG	4 cut(s)	179, 344, 408, 1048
PspN4I	GGNNCC	4 cut(s)	350, 510, 552, 970
PspPI	GGNCC	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	508, 550
RsaI	GTAC	3 cut(s)	424, 627, 878
RsaNI	GTAC	3 cut(s)	423, 626, 877
SaqAI	TTAA	2 cut(s)	485, 779
SatI	GCNGC	2 cut(s)	596, 599
Sau3AI	GATC	5 cut(s)	397, 445, 508, 550, 1042
Sau96I	GGNCC	1 cut(s)	500
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	1 cut(s)	844
ScrFI	CCNGG	5 cut(s)	181, 346, 410, 590, 1050
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	3 cut(s)	625, 991, 1045
SinI	GGWCC	1 cut(s)	500
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	6 cut(s)	70, 237, 360, 486, 639, 858
SseBI	AGGCCT	1 cut(s)	719
SsiI	CCGC	2 cut(s)	105, 545
SspMI	CTAG	5 cut(s)	315, 333, 420, 648, 687
StuI	AGGCCT	1 cut(s)	719
StyD4I	CCNGG	5 cut(s)	179, 344, 408, 588, 1048
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	4 cut(s)	144, 197, 276, 294
TaiI	ACGT	2 cut(s)	786, 947
TaqI	TCGA	2 cut(s)	527, 984
TasI	AATT	6 cut(s)	70, 237, 360, 486, 639, 858
TatI	WGTACW	2 cut(s)	422, 625
TfiI	GAWTC	6 cut(s)	89, 269, 356, 607, 1028, 1061
Tru1I	TTAA	2 cut(s)	485, 779
Tru9I	TTAA	2 cut(s)	485, 779
TscAI	CASTG	5 cut(s)	279, 285, 315, 666, 673
TseFI	GTSAC	1 cut(s)	276
TseI	GCWGC	2 cut(s)	595, 598
Tsp45I	GTSAC	1 cut(s)	276
TspDTI	ATGAA	5 cut(s)	237, 701, 803, 1002, 1025
TspRI	CASTG	5 cut(s)	279, 285, 315, 666, 673
VpaK11BI	GGWCC	1 cut(s)	500
VspI	ATTAAT	1 cut(s)	485
XapI	RAATTY	2 cut(s)	237, 639
XspI	CTAG	5 cut(s)	315, 333, 420, 648, 687
ZrmI	AGTACT	1 cut(s)	424
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.