Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003102

Physical Location & Seq

Genomic Coordinates Forward (+)

1231498 .. 1234188

Gene Structure 2691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG019400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGAGTAACTTGGGGACTTCCAAAGCTATGTCTTCAGCATTTCCACATCTCCCTGCCCCTCTTGATGTCAATTATTCCAGATTGCCAGATTCTTTTCAGGTTTCCGCACAAAGAGAAAAGCCTATGCATTCAATGTTACCACAGTCTTCTTCCCTTGGGAACTCATTTCCATCATCGTCCAGGCTTCCCTATGACAGTCAGATTTCTTCAGTTTGCCCTCATGAAAGACATTCCCAAATTTCTCCAATCAATAAGTTACCAAGTGGAGAATCACTGTCACTGACCCATTCACAGTTACAATCTACACCAGTGGCTAGTTACCCTGAGCAAACTAGAGATATTTCCTGGTGCCCAGATTCAATTCAGGAGTTTCTGCACTTTCCTGAAAATCTCCCTGATCAGAATGGCCTGGTAGATACTAGTACTGGTGTCATAATGTCTGATGATCATGCTGAAAAGACTGATTGGTCTGACTTGTATCCATTAATTTCTTTTGATGGTCCTCTGGATCCATATTGGGAGCTTTCGATTGATGATGTTCCAGCGGTGGATCCCAAACCGGAGGTGTTGAAGCATTGTTCTGATATCCCGGTGCAGCAGCCCGAGATTCAACAGCATCAGCCAGTACAATCTGGAGAAATTTTTACTAGCCCTGACCCAGTGTCCACTGCACCTTCAACCAAAGCTAGAATGCGTTGGACACAAGAACTTCATGAGGCCTTTGTTGAAGCTGTCAACCAGCTTGGTGGTAGTGAAAGAGCCACTCCTAAGGGTATCTTAAACGTCATGAAGGTTGAAAGCTTGACAATCTATCATGTAAAAAGCCATTTACAGAAATATAGAACAGCCAGATACAAACCAGAGTCATCAGAAGGAACTTGTGAGAAGAATCTGACCCCTGTTGAAGAAATGAATTCTATAGACTTGAAAACAAGCGGTATGGGGATTACTGAAGCATTGCGGTTGCAGGTAGAACTCCAGAAGCAGCTTCATGAACAACTTGAGAGTCAAAGAAAGTTGCAGTTGGAAATTGAGGAACAATCAAAGTACCTTGAAAAGATGTTTGAGCAACAAAGGAAGATGGAAGACAACAGGGTCAAGCCGACATCATCAACGTCAGATGAGCATAATAAAATAGGAACCAGCACTCCTGTCGATGAAGGTTCACAAGATGCAAGTATGAAACAGAAGGCACAAGAATCTGAAACTCATGATCCTCCAGGCGATGCCGATTCTGGTGATGTCCCCACAAAACGAGCAAGGACTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

423

Amino Acids

47.21

Weight (kDa)

5.09

Isoelectric Point (pI)

62.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	230 - 281	5e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	315 - 361	5.1e-17	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04450 AT3G04450 AT3G04450 AT3G04450 AT5G29000 AT5G29000 AT5G29000 AT5G29000
fragaria_vesca	FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670
malus_domestica	MD04G1231600.v1.1 MD12G1249600.v1.1
prunus_persica	Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1
pyrus_communis	pycom04g20490 pycom12g22940
rosa_chinensis	RchiOBHm_Chr3g0449471
rosa_laevigata	RLG00000025828
rosa_multiflora	Rmu_sc0019012.1_g000004
rosa_roxburghii	Rroxscaffold_6G00427420
rosa_rugosa	Rorug02G0621100 Rorug02G0621200 Rorug02G0621300
rosa_samantha	Rh3AG018800 Rh3AG019400 Rh3BG019200 Rh3CG018100 Rh3DG019400
rosa_wichuraiana	Rw3G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	466, 1094
Acc36I	ACCTGC	1 cut(s)	958
AccB1I	GGYRCC	1 cut(s)	348
AciI	CCGC	4 cut(s)	105, 545, 936, 961
AclWI	GGATC	5 cut(s)	503, 516, 545, 558, 1208
AcsI	RAATTY	3 cut(s)	237, 639, 913
AcuI	CTGAAG	3 cut(s)	18, 192, 972
AfaI	GTAC	3 cut(s)	424, 627, 1049
AhdI	GACNNNNNGTC	1 cut(s)	661
AhlI	ACTAGT	1 cut(s)	419
AjnI	CCWGG	4 cut(s)	179, 344, 408, 1219
AloI	GAACNNNNNNTCC	2 cut(s)	1132, 1164
AluBI	AGCT	7 cut(s)	26, 523, 686, 731, 742, 801, 988
AluI	AGCT	7 cut(s)	26, 523, 686, 731, 742, 801, 988
AlwI	GGATC	5 cut(s)	503, 516, 545, 558, 1208
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	406, 717
ApeKI	GCWGC	3 cut(s)	595, 598, 985
ApoI	RAATTY	3 cut(s)	237, 639, 913
AseI	ATTAAT	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	500
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	1250
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	768
BaeGI	GKGCMC	1 cut(s)	353
BamHI	GGATCC	2 cut(s)	508, 550
BanI	GGYRCC	1 cut(s)	348
BbsI	GAAGAC	3 cut(s)	24, 138, 1092
BbvI	GCAGC	3 cut(s)	607, 610, 997
BccI	CCATC	3 cut(s)	178, 491, 1075
BcgI	CGANNNNNNTGC	2 cut(s)	1135, 1169
BciT130I	CCWGG	4 cut(s)	181, 346, 410, 1221
BciVI	GTATCC	1 cut(s)	489
BclI	TGATCA	2 cut(s)	397, 445
BcnI	CCSGG	1 cut(s)	590
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	5 cut(s)	315, 333, 420, 648, 687
BfmI	CTRYAG	1 cut(s)	918
BfuAI	ACCTGC	1 cut(s)	958
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	3 cut(s)	596, 599, 986
BlsI	GCNGC	3 cut(s)	597, 600, 987
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	5 cut(s)	181, 346, 410, 590, 1221
Bme18I	GGWCC	1 cut(s)	500
BmeRI	GACNNNNNGTC	1 cut(s)	661
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	4 cut(s)	350, 510, 552, 1141
BmrFI	CCNGG	5 cut(s)	181, 346, 410, 590, 1221
BmrI	ACTGGG	1 cut(s)	653
BmsI	GCATC	3 cut(s)	625, 1162, 1216
BmuI	ACTGGG	1 cut(s)	653
BpiI	GAAGAC	3 cut(s)	24, 138, 1092
BpmI	CTGGAG	3 cut(s)	654, 962, 1203
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	1022
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	2 cut(s)	1132, 1162
Bse1I	ACTGG	5 cut(s)	308, 430, 623, 659, 1270
Bse21I	CCTNAGG	1 cut(s)	768
Bse3DI	GCAATG	1 cut(s)	956
BseBI	CCWGG	4 cut(s)	181, 346, 410, 1221
BseDI	CCNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	956
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	5 cut(s)	308, 430, 623, 659, 1270
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	607, 610, 997
BsgI	GTGCAG	3 cut(s)	359, 614, 654
BshFI	GGCC	2 cut(s)	408, 719
BshNI	GGYRCC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	560, 590
BslFI	GGGAC	2 cut(s)	28, 1229
BsmFI	GGGAC	2 cut(s)	28, 1229
BsmI	GAATGC	2 cut(s)	127, 696
BsnI	GGCC	2 cut(s)	408, 719
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	5 cut(s)	397, 445, 508, 550, 1213
BspACI	CCGC	4 cut(s)	105, 545, 936, 961
BspANI	GGCC	2 cut(s)	408, 719
BspCNI	CTCAG	1 cut(s)	316
BspHI	TCATGA	5 cut(s)	220, 712, 786, 991, 1210
BspLI	GGNNCC	4 cut(s)	350, 510, 552, 1141
BspMI	ACCTGC	1 cut(s)	958
BspPI	GGATC	5 cut(s)	503, 516, 545, 558, 1208
BspT107I	GGYRCC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	956
BsrI	ACTGG	5 cut(s)	308, 430, 623, 659, 1270
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	5 cut(s)	397, 445, 508, 550, 1213
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	4 cut(s)	181, 346, 410, 1221
Bst4CI	ACNGT	4 cut(s)	144, 197, 276, 294
BstDEI	CTNAG	2 cut(s)	324, 768
BstKTI	GATC	5 cut(s)	400, 448, 511, 553, 1216
BstMBI	GATC	5 cut(s)	397, 445, 508, 550, 1213
BstNI	CCWGG	4 cut(s)	181, 346, 410, 1221
BstSCI	CCNGG	5 cut(s)	179, 344, 408, 588, 1219
BstSFI	CTRYAG	1 cut(s)	918
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	3 cut(s)	607, 610, 997
BstV2I	GAAGAC	3 cut(s)	24, 138, 1092
BstX2I	RGATCY	2 cut(s)	508, 550
BstXI	CCANNNNNNTGG	1 cut(s)	746
BstYI	RGATCY	2 cut(s)	508, 550
Bsu36I	CCTNAGG	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	408, 719
BtgZI	GCGATG	1 cut(s)	1239
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	5 cut(s)	272, 278, 315, 666, 666
BveI	ACCTGC	1 cut(s)	958
CciI	TCATGA	5 cut(s)	220, 712, 786, 991, 1210
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	3 cut(s)	423, 626, 1048
CviAII	CATG	7 cut(s)	221, 449, 713, 787, 815, 992, 1211
CviQI	GTAC	3 cut(s)	423, 626, 1048
DdeI	CTNAG	2 cut(s)	324, 768
DpnI	GATC	5 cut(s)	399, 447, 510, 552, 1215
DpnII	GATC	5 cut(s)	397, 445, 508, 550, 1213
DrdI	GACNNNNNNGTC	2 cut(s)	466, 1094
DriI	GACNNNNNGTC	1 cut(s)	661
DseDI	GACNNNNNNGTC	2 cut(s)	466, 1094
Eam1105I	GACNNNNNGTC	1 cut(s)	661
Eco130I	CCWWGG	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	719
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	500
Eco57I	CTGAAG	3 cut(s)	18, 192, 972
Eco81I	CCTNAGG	1 cut(s)	768
Eco88I	CYCGRG	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	4 cut(s)	179, 344, 408, 1219
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	7 cut(s)	224, 452, 716, 790, 818, 995, 1214
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FaqI	GGGAC	2 cut(s)	28, 1229
FatI	CATG	7 cut(s)	220, 448, 712, 786, 814, 991, 1210
FbaI	TGATCA	2 cut(s)	397, 445
Fnu4HI	GCNGC	3 cut(s)	596, 599, 986
Fsp4HI	GCNGC	3 cut(s)	596, 599, 986
FspBI	CTAG	5 cut(s)	315, 333, 420, 648, 687
GluI	GCNGC	3 cut(s)	596, 599, 986
GsuI	CTGGAG	3 cut(s)	654, 962, 1203
HaeIII	GGCC	2 cut(s)	408, 719
HapII	CCGG	2 cut(s)	560, 590
Hin1II	CATG	7 cut(s)	224, 452, 716, 790, 818, 995, 1214
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	799
HinfI	GANTC	9 cut(s)	89, 269, 356, 607, 863, 889, 1006, 1199, 1232
HpaII	CCGG	2 cut(s)	560, 590
HphI	GGTGA	1 cut(s)	1250
Hpy166II	GTNNAC	3 cut(s)	666, 736, 1166
Hpy188I	TCNGA	9 cut(s)	201, 402, 442, 472, 583, 871, 894, 1120, 1204
Hpy8I	GTNNAC	3 cut(s)	666, 736, 1166
HpyAV	CCTTC	5 cut(s)	684, 784, 866, 1154, 1183
HpyCH4III	ACNGT	4 cut(s)	144, 197, 276, 294
HpyCH4IV	ACGT	2 cut(s)	783, 1115
HpyCH4V	TGCA	7 cut(s)	127, 376, 595, 671, 967, 1021, 1175
HpyF3I	CTNAG	2 cut(s)	324, 768
HpySE526I	ACGT	2 cut(s)	783, 1115
Hsp92II	CATG	7 cut(s)	224, 452, 716, 790, 818, 995, 1214
Ksp22I	TGATCA	2 cut(s)	397, 445
Kzo9I	GATC	5 cut(s)	397, 445, 508, 550, 1213
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	3 cut(s)	607, 610, 997
LweI	GCATC	3 cut(s)	625, 1162, 1216
MaeI	CTAG	5 cut(s)	315, 333, 420, 648, 687
MaeII	ACGT	2 cut(s)	783, 1115
MaeIII	GTNAC	6 cut(s)	5, 135, 255, 276, 294, 317
MalI	GATC	5 cut(s)	399, 447, 510, 552, 1215
MboI	GATC	5 cut(s)	397, 445, 508, 550, 1213
MboII	GAAGA	8 cut(s)	24, 138, 141, 198, 898, 917, 1090, 1097
MflI	RGATCY	2 cut(s)	508, 550
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	7 cut(s)	70, 237, 360, 486, 639, 913, 1029
MlyI	GAGTC	2 cut(s)	872, 1015
MmeI	TCCRAC	2 cut(s)	677, 1005
MnlI	CCTC	7 cut(s)	69, 228, 513, 556, 709, 1027, 1227
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	2 cut(s)	485, 779
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	2 cut(s)	560, 590
MspR9I	CCNGG	5 cut(s)	181, 346, 410, 590, 1221
Mva1269I	GAATGC	2 cut(s)	127, 696
MvaI	CCWGG	4 cut(s)	181, 346, 410, 1221
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	5 cut(s)	397, 445, 508, 550, 1213
NlaIII	CATG	7 cut(s)	224, 452, 716, 790, 818, 995, 1214
NlaIV	GGNNCC	4 cut(s)	350, 510, 552, 1141
NmuCI	GTSAC	1 cut(s)	276
NsiI	ATGCAT	1 cut(s)	129
PagI	TCATGA	5 cut(s)	220, 712, 786, 991, 1210
PceI	AGGCCT	1 cut(s)	719
PctI	GAATGC	2 cut(s)	127, 696
PfeI	GAWTC	7 cut(s)	89, 269, 356, 607, 889, 1199, 1232
PkrI	GCNGC	3 cut(s)	597, 600, 987
PleI	GAGTC	2 cut(s)	871, 1014
PpsI	GAGTC	2 cut(s)	871, 1014
PshBI	ATTAAT	1 cut(s)	485
Psp6I	CCWGG	4 cut(s)	179, 344, 408, 1219
PspGI	CCWGG	4 cut(s)	179, 344, 408, 1219
PspN4I	GGNNCC	4 cut(s)	350, 510, 552, 1141
PspPI	GGNCC	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	508, 550
RsaI	GTAC	3 cut(s)	424, 627, 1049
RsaNI	GTAC	3 cut(s)	423, 626, 1048
SaqAI	TTAA	2 cut(s)	485, 779
SatI	GCNGC	3 cut(s)	596, 599, 986
Sau3AI	GATC	5 cut(s)	397, 445, 508, 550, 1213
Sau96I	GGNCC	1 cut(s)	500
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	2 cut(s)	872, 1015
ScrFI	CCNGG	5 cut(s)	181, 346, 410, 590, 1221
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	3 cut(s)	625, 1162, 1216
SfcI	CTRYAG	1 cut(s)	918
SinI	GGWCC	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	1001
SmoI	CTYRAG	1 cut(s)	1001
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	7 cut(s)	70, 237, 360, 486, 639, 913, 1029
SseBI	AGGCCT	1 cut(s)	719
SsiI	CCGC	4 cut(s)	105, 545, 936, 961
SspMI	CTAG	5 cut(s)	315, 333, 420, 648, 687
StuI	AGGCCT	1 cut(s)	719
StyD4I	CCNGG	5 cut(s)	179, 344, 408, 588, 1219
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	4 cut(s)	144, 197, 276, 294
TaiI	ACGT	2 cut(s)	786, 1118
TaqI	TCGA	2 cut(s)	527, 1155
TasI	AATT	7 cut(s)	70, 237, 360, 486, 639, 913, 1029
TatI	WGTACW	2 cut(s)	422, 625
TfiI	GAWTC	7 cut(s)	89, 269, 356, 607, 889, 1199, 1232
Tru1I	TTAA	2 cut(s)	485, 779
Tru9I	TTAA	2 cut(s)	485, 779
TscAI	CASTG	5 cut(s)	279, 285, 315, 666, 673
TseFI	GTSAC	1 cut(s)	276
TseI	GCWGC	3 cut(s)	595, 598, 985
Tsp45I	GTSAC	1 cut(s)	276
TspDTI	ATGAA	8 cut(s)	237, 701, 803, 926, 980, 1008, 1173, 1196
TspRI	CASTG	5 cut(s)	279, 285, 315, 666, 673
VpaK11BI	GGWCC	1 cut(s)	500
VspI	ATTAAT	1 cut(s)	485
XapI	RAATTY	3 cut(s)	237, 639, 913
XspI	CTAG	5 cut(s)	315, 333, 420, 648, 687
ZrmI	AGTACT	1 cut(s)	424
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.