Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003102

Physical Location & Seq

Genomic Coordinates Reverse (-)

11021980 .. 11024978

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G29000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAATAACCCTGTACCGTGTCAGTCGGTCTCTGGTGGCAATTCTGGTGGTTATTTGTTTCCTTCTTCCTCTGGATACTGCAATGTTTCAGCTGTCTTGCCTCATGGAAGGAATTTGCAAAACCAGCCACCTGTTTCCACCGTGCCTAGAGACAGATTGGCTATGCAGGATTGTCCTTTGATAGCTCAATCCTCGTTGATTAATCATCACCCTCAAGAGTTCATAGATCCACTTCATGAGTTCTTTGATTTCTCTGATCATGTTCCTGTTCAGAATCTACAAGCAGAGAGTAGTGGAGTAAGGGTGGACTCATCCGTGGAACTTCATAAGAAAAGTGAATGGCAAGATTGGGCAGATCAGCTGATTTCTGTTGACGATGGTTCTGAGCCAAATTGGTCTGAACTTCTTGGAGATTCAAGTTCCCACAATCCAAATTCAGAGATACCTACACCATTTTTGGATGTACCAAGGCTAGATATAACAGCTAACCAGCAGCAACAGATGGTTTCATCAGAGGACCAGCTCAGCGGCAGAAACTCATCATCTAGTGTAGCAACATCTAAACAACGTATGCGTTGGACACCAGAACTTCACGAGGCATTCGTTGAAGCTGTTAATCAGCTTGGTGGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGAAGCTCTTGAATAACCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAGAAATATAGAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAGGAGAACCTCAAGAGAAGAAGATGACATCTATTGAAGATATCAAATCTCTTGACATGAAAACGAGCGTTGAGATCACACAAGCTCTACGGTTACAAATGGAAGTGCAGAAACGTCTCCACGAGCAGCTCGAGATCCAACGGTCACTGCAGTTACAGATTGAAAAACAGGGCCGGTACCTACAGATGATGTTCGAGAAACAACAAAAGATACAAGACAACAAGAGCTCTTCTTCAGAAGCATCACCAAAGCAATGCAATGGTTCATTTGCAGAAGTTGAAGTTGGTCTTGAGACACTAACAGGGGACCAAAATGAATCTGCTTCAGCATCAAGGAAACGTGTCAGAGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

370

Amino Acids

41.42

Weight (kDa)

5.45

Isoelectric Point (pI)

57.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	190 - 241	1.3e-10	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	277 - 322	8.2e-21	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04450 AT3G04450 AT3G04450 AT3G04450 AT5G29000 AT5G29000 AT5G29000 AT5G29000
fragaria_vesca	FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670
malus_domestica	MD04G1231600.v1.1 MD12G1249600.v1.1
prunus_persica	Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1
pyrus_communis	pycom04g20490 pycom12g22940
rosa_chinensis	RchiOBHm_Chr3g0449471
rosa_laevigata	RLG00000025828
rosa_multiflora	Rmu_sc0019012.1_g000004
rosa_roxburghii	Rroxscaffold_6G00427420
rosa_rugosa	Rorug02G0621100 Rorug02G0621200 Rorug02G0621300
rosa_samantha	Rh3AG018800 Rh3AG019400 Rh3BG019200 Rh3CG018100 Rh3DG019400
rosa_wichuraiana	Rw3G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	933
AccB1I	GGYRCC	1 cut(s)	933
AciI	CCGC	1 cut(s)	528
AclWI	GGATC	2 cut(s)	221, 886
AcsI	RAATTY	2 cut(s)	112, 433
AcuI	CTGAAG	2 cut(s)	975, 1065
AfaI	GTAC	3 cut(s)	15, 465, 935
AflIII	ACRYGT	1 cut(s)	1096
AgsI	TTSAA	7 cut(s)	417, 608, 661, 670, 794, 920, 1037
AjnI	CCWGG	1 cut(s)	676
AjuI	GAANNNNNNNTTGG	2 cut(s)	1023, 1055
Alw21I	GWGCWC	1 cut(s)	986
Alw26I	GTCTC	5 cut(s)	34, 144, 737, 878, 1043
AlwI	GGATC	2 cut(s)	221, 886
Ama87I	CYCGRG	1 cut(s)	887
AoxI	GGCC	1 cut(s)	928
ApeKI	GCWGC	2 cut(s)	493, 883
ApoI	RAATTY	2 cut(s)	112, 433
AseI	ATTAAT	1 cut(s)	201
Asp718I	GGTACC	1 cut(s)	933
AspS9I	GGNCC	3 cut(s)	517, 928, 1063
AsuHPI	GGTGA	2 cut(s)	200, 993
AvaI	CYCGRG	1 cut(s)	887
AvaII	GGWCC	2 cut(s)	517, 1063
AxyI	CCTNAGG	1 cut(s)	648
BanI	GGYRCC	1 cut(s)	933
BanII	GRGCYC	1 cut(s)	986
BauI	CACGAG	2 cut(s)	593, 878
Bbv12I	GWGCWC	1 cut(s)	986
BbvI	GCAGC	2 cut(s)	505, 895
BccI	CCATC	2 cut(s)	371, 496
BceAI	ACGGC	1 cut(s)	741
BciT130I	CCWGG	1 cut(s)	678
BciVI	GTATCC	1 cut(s)	68
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	5 cut(s)	34, 144, 737, 878, 1043
BfaI	CTAG	3 cut(s)	147, 473, 546
BfmI	CTRYAG	2 cut(s)	905, 938
BfuI	GTATCC	1 cut(s)	68
BisI	GCNGC	3 cut(s)	494, 529, 884
BlpI	GCTNAGC	1 cut(s)	524
BlsI	GCNGC	3 cut(s)	495, 530, 885
Bme1390I	CCNGG	1 cut(s)	678
Bme18I	GGWCC	2 cut(s)	517, 1063
BmeT110I	CYCGRG	1 cut(s)	887
BmgT120I	GGNCC	3 cut(s)	517, 928, 1063
BmiI	GGNNCC	2 cut(s)	935, 1064
BmrFI	CCNGG	1 cut(s)	678
BmsI	GCATC	2 cut(s)	1007, 1094
Bpu1102I	GCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	3 cut(s)	198, 753, 1067
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	3 cut(s)	315, 467, 676
BsaWI	WCCGGW	1 cut(s)	739
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bse118I	RCCGGY	1 cut(s)	930
Bse21I	CCTNAGG	1 cut(s)	648
Bse3DI	GCAATG	3 cut(s)	88, 1016, 1021
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	3 cut(s)	315, 467, 676
BseGI	GGATG	2 cut(s)	311, 466
BseMI	GCAATG	3 cut(s)	88, 1016, 1021
BseMII	CTCAG	2 cut(s)	375, 538
BseXI	GCAGC	2 cut(s)	505, 895
BsgI	GTGCAG	1 cut(s)	884
BshFI	GGCC	1 cut(s)	930
BshNI	GGYRCC	1 cut(s)	933
BsiHKAI	GWGCWC	1 cut(s)	986
BsiHKCI	CYCGRG	1 cut(s)	887
BsiSI	CCGG	2 cut(s)	740, 931
BslFI	GGGAC	1 cut(s)	1076
BsmAI	GTCTC	5 cut(s)	34, 144, 737, 878, 1043
BsmBI	CGTCTC	1 cut(s)	878
BsmFI	GGGAC	1 cut(s)	1076
BsmI	GAATGC	1 cut(s)	599
BsnI	GGCC	1 cut(s)	930
Bso31I	GGTCTC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	887
Bsp1286I	GDGCHC	1 cut(s)	986
Bsp143I	GATC	5 cut(s)	226, 256, 355, 831, 891
Bsp1720I	GCTNAGC	1 cut(s)	524
BspACI	CCGC	1 cut(s)	528
BspANI	GGCC	1 cut(s)	930
BspCNI	CTCAG	2 cut(s)	376, 537
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	935, 1064
BspMAI	CTGCAG	1 cut(s)	909
BspPI	GGATC	2 cut(s)	221, 886
BspQI	GCTCTTC	1 cut(s)	991
BspT107I	GGYRCC	1 cut(s)	933
BspTNI	GGTCTC	1 cut(s)	34
BsrDI	GCAATG	3 cut(s)	88, 1016, 1021
BsrFI	RCCGGY	1 cut(s)	930
BssAI	RCCGGY	1 cut(s)	930
BssECI	CCNNGG	3 cut(s)	315, 467, 676
BssMI	GATC	5 cut(s)	226, 256, 355, 831, 891
BssSI	CACGAG	2 cut(s)	593, 878
BssT1I	CCWWGG	1 cut(s)	467
Bst2BI	CACGAG	2 cut(s)	593, 878
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	4 cut(s)	18, 142, 849, 900
Bst6I	CTCTTC	1 cut(s)	991
BstDEI	CTNAG	3 cut(s)	384, 524, 648
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	311, 466
BstKTI	GATC	5 cut(s)	229, 259, 358, 834, 894
BstMAI	GTCTC	5 cut(s)	34, 144, 737, 878, 1043
BstMBI	GATC	5 cut(s)	226, 256, 355, 831, 891
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	1 cut(s)	676
BstSFI	CTRYAG	2 cut(s)	905, 938
BstV1I	GCAGC	2 cut(s)	505, 895
BstX2I	RGATCY	2 cut(s)	226, 891
BstYI	RGATCY	2 cut(s)	226, 891
Bsu36I	CCTNAGG	1 cut(s)	648
BsuI	GTATCC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	930
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	311, 466
BtsI	GCAGTG	1 cut(s)	902
BtsIMutI	CAGTG	1 cut(s)	902
CciI	TCATGA	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	930
Cfr13I	GGNCC	3 cut(s)	517, 928, 1063
Csp6I	GTAC	3 cut(s)	14, 464, 934
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	5 cut(s)	104, 236, 260, 695, 814
CviQI	GTAC	3 cut(s)	14, 464, 934
DdeI	CTNAG	3 cut(s)	384, 524, 648
DpnI	GATC	5 cut(s)	228, 258, 357, 833, 893
DpnII	GATC	5 cut(s)	226, 256, 355, 831, 891
Eam1104I	CTCTTC	1 cut(s)	991
EarI	CTCTTC	1 cut(s)	991
Ecl136II	GAGCTC	1 cut(s)	984
Eco130I	CCWWGG	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	986
Eco31I	GGTCTC	1 cut(s)	34
Eco32I	GATATC	1 cut(s)	799
Eco47I	GGWCC	2 cut(s)	517, 1063
Eco53kI	GAGCTC	1 cut(s)	984
Eco57I	CTGAAG	2 cut(s)	975, 1065
Eco81I	CCTNAGG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	887
EcoICRI	GAGCTC	1 cut(s)	984
EcoRII	CCWGG	1 cut(s)	676
EcoRV	GATATC	1 cut(s)	799
EcoT14I	CCWWGG	1 cut(s)	467
EcoT38I	GRGCYC	1 cut(s)	986
ErhI	CCWWGG	1 cut(s)	467
Esp3I	CGTCTC	1 cut(s)	878
FaeI	CATG	5 cut(s)	107, 239, 263, 698, 817
FalI	AAGNNNNNCTT	2 cut(s)	1029, 1061
FaqI	GGGAC	1 cut(s)	1076
FatI	CATG	5 cut(s)	103, 235, 259, 694, 813
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	494, 529, 884
FokI	GGATG	2 cut(s)	298, 473
FriOI	GRGCYC	1 cut(s)	986
Fsp4HI	GCNGC	3 cut(s)	494, 529, 884
FspBI	CTAG	3 cut(s)	147, 473, 546
GluI	GCNGC	3 cut(s)	494, 529, 884
HaeIII	GGCC	1 cut(s)	930
HapII	CCGG	2 cut(s)	740, 931
Hin1II	CATG	5 cut(s)	107, 239, 263, 698, 817
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	4 cut(s)	274, 308, 413, 1073
HpaII	CCGG	2 cut(s)	740, 931
HphI	GGTGA	2 cut(s)	200, 993
Hpy166II	GTNNAC	3 cut(s)	307, 373, 635
Hpy188I	TCNGA	9 cut(s)	256, 273, 385, 400, 439, 514, 751, 994, 1103
Hpy8I	GTNNAC	3 cut(s)	307, 373, 635
HpyAV	CCTTC	2 cut(s)	72, 102
HpyCH4III	ACNGT	4 cut(s)	18, 142, 849, 900
HpyCH4IV	ACGT	3 cut(s)	568, 871, 1096
HpyCH4V	TGCA	8 cut(s)	81, 118, 166, 712, 865, 907, 1014, 1028
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	3 cut(s)	384, 524, 648
HpySE526I	ACGT	3 cut(s)	568, 871, 1096
Hsp92II	CATG	5 cut(s)	107, 239, 263, 698, 817
KpnI	GGTACC	1 cut(s)	937
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	226, 256, 355, 831, 891
LguI	GCTCTTC	1 cut(s)	991
Lsp1109I	GCAGC	2 cut(s)	505, 895
LweI	GCATC	2 cut(s)	1007, 1094
MaeI	CTAG	3 cut(s)	147, 473, 546
MaeII	ACGT	3 cut(s)	568, 871, 1096
MaeIII	GTNAC	4 cut(s)	754, 849, 900, 909
MalI	GATC	5 cut(s)	228, 258, 357, 833, 893
MboI	GATC	5 cut(s)	226, 256, 355, 831, 891
MboII	GAAGA	6 cut(s)	57, 787, 790, 806, 978, 981
MflI	RGATCY	2 cut(s)	226, 891
MhlI	GDGCHC	1 cut(s)	986
MluCI	AATT	4 cut(s)	40, 112, 391, 433
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	557, 919
MnlI	CCTC	7 cut(s)	79, 111, 202, 222, 508, 589, 777
MseI	TTAA	3 cut(s)	201, 615, 1111
MspA1I	CMGCKG	3 cut(s)	92, 361, 528
MspI	CCGG	2 cut(s)	740, 931
MspR9I	CCNGG	1 cut(s)	678
Mva1269I	GAATGC	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	1 cut(s)	124
NdeII	GATC	5 cut(s)	226, 256, 355, 831, 891
NlaIII	CATG	5 cut(s)	107, 239, 263, 698, 817
NlaIV	GGNNCC	2 cut(s)	935, 1064
NmuCI	GTSAC	1 cut(s)	900
PaeR7I	CTCGAG	1 cut(s)	887
PagI	TCATGA	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	991
PcsI	WCGNNNNNNNCGW	2 cut(s)	600, 885
PctI	GAATGC	1 cut(s)	599
PfeI	GAWTC	3 cut(s)	274, 413, 1073
PkrI	GCNGC	3 cut(s)	495, 530, 885
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PshBI	ATTAAT	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	986
Psp6I	CCWGG	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	2 cut(s)	935, 1064
PspPI	GGNCC	3 cut(s)	517, 928, 1063
PstI	CTGCAG	1 cut(s)	909
PsuI	RGATCY	2 cut(s)	226, 891
PvuII	CAGCTG	2 cut(s)	92, 361
RsaI	GTAC	3 cut(s)	15, 465, 935
RsaNI	GTAC	3 cut(s)	14, 464, 934
SacI	GAGCTC	1 cut(s)	986
SapI	GCTCTTC	1 cut(s)	991
SaqAI	TTAA	3 cut(s)	201, 615, 1111
SatI	GCNGC	3 cut(s)	494, 529, 884
Sau3AI	GATC	5 cut(s)	226, 256, 355, 831, 891
Sau96I	GGNCC	3 cut(s)	517, 928, 1063
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	678
SduI	GDGCHC	1 cut(s)	986
SfaNI	GCATC	2 cut(s)	1007, 1094
SfcI	CTRYAG	2 cut(s)	905, 938
Sfr274I	CTCGAG	1 cut(s)	887
SinI	GGWCC	2 cut(s)	517, 1063
SlaI	CTCGAG	1 cut(s)	887
SmlI	CTYRAG	4 cut(s)	213, 768, 887, 1046
SmoI	CTYRAG	4 cut(s)	213, 768, 887, 1046
Sse9I	AATT	4 cut(s)	40, 112, 391, 433
SsiI	CCGC	1 cut(s)	528
SspMI	CTAG	3 cut(s)	147, 473, 546
SstI	GAGCTC	1 cut(s)	986
StyD4I	CCNGG	1 cut(s)	676
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	4 cut(s)	18, 142, 849, 900
TaiI	ACGT	3 cut(s)	571, 874, 1099
TaqI	TCGA	2 cut(s)	888, 951
TaqII	GACCGA	1 cut(s)	16
TasI	AATT	4 cut(s)	40, 112, 391, 433
TauI	GCSGC	1 cut(s)	531
TfiI	GAWTC	3 cut(s)	274, 413, 1073
Tru1I	TTAA	3 cut(s)	201, 615, 1111
Tru9I	TTAA	3 cut(s)	201, 615, 1111
TscAI	CASTG	1 cut(s)	909
TseFI	GTSAC	1 cut(s)	900
TseI	GCWGC	2 cut(s)	493, 883
Tsp45I	GTSAC	1 cut(s)	900
TspDTI	ATGAA	8 cut(s)	17, 211, 224, 314, 498, 830, 1011, 1086
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	1 cut(s)	909
VpaK11BI	GGWCC	2 cut(s)	517, 1063
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	2 cut(s)	112, 433
XhoI	CTCGAG	1 cut(s)	887
XspI	CTAG	3 cut(s)	147, 473, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.