Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003102

Physical Location & Seq

Genomic Coordinates Forward (+)

48031837 .. 48036492

Gene Structure 4656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAGTAACTTGGGGACTTCCAAAGCTATGTCTTCAGCATTTCCACATCTCCCTGCCCCTCTTGATGTCAATTATTCCAGATTGCCAGATTCTTTTCAGGTTTCCGCACAAAGAGAAAAGCCTATGCATTCAATGTTACCACAGTCTTCTTCCCTTGGGAACTCATTTCCATCATCGTCCAGGCTTCCCTGTGACAGTCAGATTTCTTCAGTTTACCCTCATGAAAGAGATTCCCAAATTTCTCCAATCAATAAGTTACCAAGTGGAGAATCACTGTCATTGACCCATTCACAGTTACAATCTACACCAGTGGCTAGTTACCCTGAGCAAAATAAAGATATTTCCTGGTGCCCAGATTCAATTCAGGAGTTTCTGCACTTTCCTGAAAATCTCCCTGATCAGAATGGCCTGGTAGATACTAGTACTGGTGTCATAATGTCTGATGATCATGCTGAAAAGACTGATTGGTCTGACTTGTATCCATTAATTTCTTTTGATGGTCCTCTGGATCCATATTGGGAGATTTCGATTGATGATGTTCCTGCGGTGGATCCCAAACTGGAGGTGTTGAAGCATTCTTCTGATATCCCAGTACAGCAGCTCGAGATTCAACAGCATCAGCCCGAGATTCAACAGCATCAGCCAGTACAATCTAGAGAAATTTTTACTAGTCCTGACCCAGTGTCCACTGCACCTTCAACCAAAGCTAGAATGCGTTGGACACAAGAACTTCATGAGGCCTTTGTTGAAGCTGTCAACCAGCTTGGTGGTAGTGAAAGAACTTGTGAGAAGAATCTGACTCCTGTTGAAGAAATGAATTCTATAGACTTGAAAACGAGCAGTATGGGGATTACTGAAGCATTGCGGTTGCAGGTAGAACTCCAGAAGCAGCTTCATGAACAACTTGAGAGTCAAAGAAAGTTGCAGTTGGAAATTGAGGAACAATCAAAGTACCTTGAAAAGATGTTTGAGCAACAAAGGAAGATGGAAGACAACAGGGTCAAGCCGACATCATCAACGTCAGATGAGCATAATAAAATAGGAACCAGCACTTCTGTGGATGAAGGTTCACAAGATGCAAGTATGAAACAGAAGACTCAAGAATCTGAAACTCATGAGACTCATGATCCTCCAGGTGATGCCGATTCTGGTGCCGTCCCCACAAAACGAGCAAGGACTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

394

Amino Acids

44.08

Weight (kDa)

4.83

Isoelectric Point (pI)

65.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	283 - 329	4.6e-17	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04450 AT3G04450 AT3G04450 AT3G04450 AT5G29000 AT5G29000 AT5G29000 AT5G29000
fragaria_vesca	FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670 FvH4_6g01670
malus_domestica	MD04G1231600.v1.1 MD12G1249600.v1.1
prunus_persica	Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1 Prupe.6G351000_v2.0.a1
pyrus_communis	pycom04g20490 pycom12g22940
rosa_chinensis	RchiOBHm_Chr3g0449471
rosa_laevigata	RLG00000025828
rosa_multiflora	Rmu_sc0019012.1_g000004
rosa_roxburghii	Rroxscaffold_6G00427420
rosa_rugosa	Rorug02G0621100 Rorug02G0621200 Rorug02G0621300
rosa_samantha	Rh3AG018800 Rh3AG019400 Rh3BG019200 Rh3CG018100 Rh3DG019400
rosa_wichuraiana	Rw3G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	466, 998
Acc36I	ACCTGC	1 cut(s)	862
AccB1I	GGYRCC	2 cut(s)	348, 1151
AciI	CCGC	3 cut(s)	105, 545, 865
AclWI	GGATC	5 cut(s)	503, 516, 545, 558, 1121
AcsI	RAATTY	3 cut(s)	237, 660, 817
AcuI	CTGAAG	3 cut(s)	18, 192, 876
AfaI	GTAC	4 cut(s)	424, 594, 648, 953
AhdI	GACNNNNNGTC	1 cut(s)	682
AhlI	ACTAGT	2 cut(s)	419, 668
AjnI	CCWGG	4 cut(s)	179, 344, 408, 1132
AleI	CACNNNNGTG	1 cut(s)	1055
AluBI	AGCT	6 cut(s)	26, 601, 707, 752, 763, 892
AluI	AGCT	6 cut(s)	26, 601, 707, 752, 763, 892
Alw26I	GTCTC	1 cut(s)	1112
AlwI	GGATC	5 cut(s)	503, 516, 545, 558, 1121
Ama87I	CYCGRG	2 cut(s)	602, 623
AoxI	GGCC	2 cut(s)	406, 738
ApeKI	GCWGC	2 cut(s)	598, 889
ApoI	RAATTY	3 cut(s)	237, 660, 817
AseI	ATTAAT	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	1148
AvaI	CYCGRG	2 cut(s)	602, 623
AvaII	GGWCC	1 cut(s)	500
BaeGI	GKGCMC	1 cut(s)	353
BamHI	GGATCC	2 cut(s)	508, 550
BanI	GGYRCC	2 cut(s)	348, 1151
BbsI	GAAGAC	4 cut(s)	24, 138, 996, 1100
BbvI	GCAGC	2 cut(s)	610, 901
BccI	CCATC	3 cut(s)	178, 491, 979
BceAI	ACGGC	1 cut(s)	1139
BcgI	CGANNNNNNTGC	2 cut(s)	1133, 1167
BciT130I	CCWGG	4 cut(s)	181, 346, 410, 1134
BciVI	GTATCC	1 cut(s)	489
BclI	TGATCA	2 cut(s)	397, 445
BcoDI	GTCTC	1 cut(s)	1112
BcuI	ACTAGT	2 cut(s)	419, 668
BfaI	CTAG	5 cut(s)	315, 420, 654, 669, 708
BfmI	CTRYAG	1 cut(s)	822
BfuAI	ACCTGC	1 cut(s)	862
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	2 cut(s)	599, 890
BlsI	GCNGC	2 cut(s)	600, 891
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	4 cut(s)	181, 346, 410, 1134
Bme18I	GGWCC	1 cut(s)	500
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmeT110I	CYCGRG	2 cut(s)	602, 623
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	5 cut(s)	350, 510, 552, 1045, 1153
BmrFI	CCNGG	4 cut(s)	181, 346, 410, 1134
BmrI	ACTGGG	2 cut(s)	584, 674
BmsI	GCATC	4 cut(s)	625, 646, 1066, 1129
BmuI	ACTGGG	2 cut(s)	584, 674
BpiI	GAAGAC	4 cut(s)	24, 138, 996, 1100
BpmI	CTGGAG	3 cut(s)	581, 866, 1116
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	2 cut(s)	926, 1083
BsaJI	CCNNGG	1 cut(s)	154
Bse1I	ACTGG	7 cut(s)	308, 430, 564, 590, 644, 680, 1183
Bse3DI	GCAATG	1 cut(s)	860
BseBI	CCWGG	4 cut(s)	181, 346, 410, 1134
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	1066
BseMI	GCAATG	1 cut(s)	860
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	7 cut(s)	308, 430, 564, 590, 644, 680, 1183
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	610, 901
BsgI	GTGCAG	2 cut(s)	359, 675
BshFI	GGCC	2 cut(s)	408, 740
BshNI	GGYRCC	2 cut(s)	348, 1151
BsiHKCI	CYCGRG	2 cut(s)	602, 623
BslFI	GGGAC	2 cut(s)	28, 1142
BsmAI	GTCTC	1 cut(s)	1112
BsmFI	GGGAC	2 cut(s)	28, 1142
BsmI	GAATGC	3 cut(s)	127, 574, 717
BsnI	GGCC	2 cut(s)	408, 740
BsoBI	CYCGRG	2 cut(s)	602, 623
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	5 cut(s)	397, 445, 508, 550, 1126
BspACI	CCGC	3 cut(s)	105, 545, 865
BspANI	GGCC	2 cut(s)	408, 740
BspCNI	CTCAG	1 cut(s)	316
BspHI	TCATGA	5 cut(s)	220, 733, 895, 1114, 1123
BspLI	GGNNCC	5 cut(s)	350, 510, 552, 1045, 1153
BspMI	ACCTGC	1 cut(s)	862
BspPI	GGATC	5 cut(s)	503, 516, 545, 558, 1121
BspT107I	GGYRCC	2 cut(s)	348, 1151
BsrDI	GCAATG	1 cut(s)	860
BsrI	ACTGG	7 cut(s)	308, 430, 564, 590, 644, 680, 1183
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	5 cut(s)	397, 445, 508, 550, 1126
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	4 cut(s)	181, 346, 410, 1134
Bst4CI	ACNGT	4 cut(s)	144, 197, 276, 294
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	1066
BstKTI	GATC	5 cut(s)	400, 448, 511, 553, 1129
BstMAI	GTCTC	1 cut(s)	1112
BstMBI	GATC	5 cut(s)	397, 445, 508, 550, 1126
BstNI	CCWGG	4 cut(s)	181, 346, 410, 1134
BstSCI	CCNGG	4 cut(s)	179, 344, 408, 1132
BstSFI	CTRYAG	1 cut(s)	822
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	610, 901
BstV2I	GAAGAC	4 cut(s)	24, 138, 996, 1100
BstX2I	RGATCY	2 cut(s)	508, 550
BstXI	CCANNNNNNTGG	1 cut(s)	767
BstYI	RGATCY	2 cut(s)	508, 550
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	408, 740
BtsCI	GGATG	1 cut(s)	1066
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	4 cut(s)	272, 315, 687, 687
BveI	ACCTGC	1 cut(s)	862
CciI	TCATGA	5 cut(s)	220, 733, 895, 1114, 1123
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	4 cut(s)	423, 593, 647, 952
CviAII	CATG	6 cut(s)	221, 449, 734, 896, 1115, 1124
CviQI	GTAC	4 cut(s)	423, 593, 647, 952
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	5 cut(s)	399, 447, 510, 552, 1128
DpnII	GATC	5 cut(s)	397, 445, 508, 550, 1126
DrdI	GACNNNNNNGTC	2 cut(s)	466, 998
DriI	GACNNNNNGTC	1 cut(s)	682
DseDI	GACNNNNNNGTC	2 cut(s)	466, 998
Eam1105I	GACNNNNNGTC	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	740
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	500
Eco57I	CTGAAG	3 cut(s)	18, 192, 876
Eco88I	CYCGRG	2 cut(s)	602, 623
EcoRI	GAATTC	1 cut(s)	817
EcoRII	CCWGG	4 cut(s)	179, 344, 408, 1132
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	6 cut(s)	224, 452, 737, 899, 1118, 1127
FaqI	GGGAC	2 cut(s)	28, 1142
FatI	CATG	6 cut(s)	220, 448, 733, 895, 1114, 1123
FbaI	TGATCA	2 cut(s)	397, 445
Fnu4HI	GCNGC	2 cut(s)	599, 890
FokI	GGATG	1 cut(s)	1073
Fsp4HI	GCNGC	2 cut(s)	599, 890
FspBI	CTAG	5 cut(s)	315, 420, 654, 669, 708
GluI	GCNGC	2 cut(s)	599, 890
GsuI	CTGGAG	3 cut(s)	581, 866, 1116
HaeIII	GGCC	2 cut(s)	408, 740
Hin1II	CATG	6 cut(s)	224, 452, 737, 899, 1118, 1127
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HphI	GGTGA	1 cut(s)	1148
Hpy166II	GTNNAC	4 cut(s)	214, 687, 757, 1070
Hpy188I	TCNGA	8 cut(s)	201, 402, 442, 472, 583, 798, 1024, 1108
Hpy8I	GTNNAC	4 cut(s)	214, 687, 757, 1070
HpyAV	CCTTC	2 cut(s)	705, 1058
HpyCH4III	ACNGT	4 cut(s)	144, 197, 276, 294
HpyCH4IV	ACGT	1 cut(s)	1019
HpyCH4V	TGCA	6 cut(s)	127, 376, 692, 871, 925, 1079
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	1019
Hsp92II	CATG	6 cut(s)	224, 452, 737, 899, 1118, 1127
Ksp22I	TGATCA	2 cut(s)	397, 445
Kzo9I	GATC	5 cut(s)	397, 445, 508, 550, 1126
Lsp1109I	GCAGC	2 cut(s)	610, 901
LweI	GCATC	4 cut(s)	625, 646, 1066, 1129
MaeI	CTAG	5 cut(s)	315, 420, 654, 669, 708
MaeII	ACGT	1 cut(s)	1019
MaeIII	GTNAC	6 cut(s)	5, 135, 191, 255, 294, 317
MalI	GATC	5 cut(s)	399, 447, 510, 552, 1128
MboI	GATC	5 cut(s)	397, 445, 508, 550, 1126
MflI	RGATCY	2 cut(s)	508, 550
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	7 cut(s)	70, 237, 360, 486, 660, 817, 933
MlyI	GAGTC	4 cut(s)	793, 919, 1090, 1114
MmeI	TCCRAC	2 cut(s)	698, 909
MnlI	CCTC	7 cut(s)	69, 228, 513, 556, 730, 931, 1140
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	1 cut(s)	485
MslI	CAYNNNNRTG	1 cut(s)	1055
MspR9I	CCNGG	4 cut(s)	181, 346, 410, 1134
Mva1269I	GAATGC	3 cut(s)	127, 574, 717
MvaI	CCWGG	4 cut(s)	181, 346, 410, 1134
NdeII	GATC	5 cut(s)	397, 445, 508, 550, 1126
NlaIII	CATG	6 cut(s)	224, 452, 737, 899, 1118, 1127
NlaIV	GGNNCC	5 cut(s)	350, 510, 552, 1045, 1153
NmuCI	GTSAC	1 cut(s)	191
NsiI	ATGCAT	1 cut(s)	129
OliI	CACNNNNGTG	1 cut(s)	1055
PaeR7I	CTCGAG	1 cut(s)	602
PagI	TCATGA	5 cut(s)	220, 733, 895, 1114, 1123
PceI	AGGCCT	1 cut(s)	740
PctI	GAATGC	3 cut(s)	127, 574, 717
PfeI	GAWTC	9 cut(s)	89, 230, 269, 356, 607, 628, 793, 1103, 1145
PkrI	GCNGC	2 cut(s)	600, 891
PleI	GAGTC	4 cut(s)	793, 918, 1090, 1114
PpsI	GAGTC	4 cut(s)	793, 918, 1090, 1114
PshBI	ATTAAT	1 cut(s)	485
Psp6I	CCWGG	4 cut(s)	179, 344, 408, 1132
PspGI	CCWGG	4 cut(s)	179, 344, 408, 1132
PspN4I	GGNNCC	5 cut(s)	350, 510, 552, 1045, 1153
PspPI	GGNCC	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	508, 550
RsaI	GTAC	4 cut(s)	424, 594, 648, 953
RsaNI	GTAC	4 cut(s)	423, 593, 647, 952
RseI	CAYNNNNRTG	1 cut(s)	1055
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	2 cut(s)	599, 890
Sau3AI	GATC	5 cut(s)	397, 445, 508, 550, 1126
Sau96I	GGNCC	1 cut(s)	500
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	4 cut(s)	793, 919, 1090, 1114
ScrFI	CCNGG	4 cut(s)	181, 346, 410, 1134
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	4 cut(s)	625, 646, 1066, 1129
SfcI	CTRYAG	1 cut(s)	822
Sfr274I	CTCGAG	1 cut(s)	602
SinI	GGWCC	1 cut(s)	500
SlaI	CTCGAG	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	1055
SmlI	CTYRAG	3 cut(s)	602, 905, 1098
SmoI	CTYRAG	3 cut(s)	602, 905, 1098
SpeI	ACTAGT	2 cut(s)	419, 668
Sse9I	AATT	7 cut(s)	70, 237, 360, 486, 660, 817, 933
SseBI	AGGCCT	1 cut(s)	740
SsiI	CCGC	3 cut(s)	105, 545, 865
SspMI	CTAG	5 cut(s)	315, 420, 654, 669, 708
StuI	AGGCCT	1 cut(s)	740
StyD4I	CCNGG	4 cut(s)	179, 344, 408, 1132
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	4 cut(s)	144, 197, 276, 294
TaiI	ACGT	1 cut(s)	1022
TaqI	TCGA	2 cut(s)	527, 603
TasI	AATT	7 cut(s)	70, 237, 360, 486, 660, 817, 933
TatI	WGTACW	3 cut(s)	422, 592, 646
TfiI	GAWTC	9 cut(s)	89, 230, 269, 356, 607, 628, 793, 1103, 1145
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	4 cut(s)	279, 315, 687, 694
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	2 cut(s)	598, 889
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	7 cut(s)	237, 722, 830, 884, 912, 1077, 1100
TspRI	CASTG	4 cut(s)	279, 315, 687, 694
VpaK11BI	GGWCC	1 cut(s)	500
VspI	ATTAAT	1 cut(s)	485
XapI	RAATTY	3 cut(s)	237, 660, 817
XbaI	TCTAGA	1 cut(s)	653
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1054
XhoI	CTCGAG	1 cut(s)	602
XspI	CTAG	5 cut(s)	315, 420, 654, 669, 708
ZrmI	AGTACT	1 cut(s)	424
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.