Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006222

Physical Location & Seq

Genomic Coordinates Reverse (-)

1321228 .. 1326005

Gene Structure 4778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGAAATTAAGTAGAACTGTCTTGTCTTGTTTGCCGTCTCTGCTAAAACCCTACTCGAGCTTGAGCTGGACAACGAAAATAGCGACGATAGCTACAAACTTTGAAGGTATGAAAACAGTAGATGAAGCTGACGTGGGCATCTCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAAGATACGCAGACTTTATTGTTAATGAAGTAGATATGGATGGTAATGTGGTTCATTTGACATCCTTGGACTTGCCTCCTGAGATGGCTGTGAAGGAGGAGGATAAAGCGAAAAGTTGTGATAATGTACCCCAAAATTATACTTCTGCAGTTGAGTCTTTCAAATCTATTTCCAGTGTTACTGATGCAGAGCGTTTGGAAATATTGATCAATCAAGTCACCTCAGGAACTGATGGTGAAGTCTTACCAGTTGTTCTTGATCCAAGTTCTGACAAATCCAAGAGAACGGCTATCCACAACTTTGTTAAAGAGAATTTCAAGTTCCTAGTGACTGACACTGTCGACGGTCCTGATTCTACTTCAAAATGCATCCGTGTGCGAGTGAATTCAGGAGCCAATAACAACAGAGGTAATAGATCAAAAAAACGAAAGGAAAGAGGCGATAAGCCTTTTGATAGCAGAGGTTCAGAGCATTGGCCAGAGCATGTTGGCAAGTTTCTCAGGTTCCATCTTTACAAGGAGAACAAAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGCCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGTGTAACTGTGTTCAAACAGCAAGCTAGCAAATTGGCTGCGCTTAACAAGAGATTGTTTGGGATCAAAGTTGGTGACTTCTGCAATGTCAAAGAGGGCCTTCTCCTTGGGCAGCTCATGGGAAACAGATTTACTATCACATTAAGAGGAGTGGTTGCGGATTCTGAAGAAACTATAAAACAATCTGCAGAATCCTTGGGGAAAGATGGCTTCATCAACTACTTTGGCTTGCAGCGTTTTGGAAGTGGTTCAGTACCAACCCACCATGTAGGAGCTGCACTATTGAAAGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGCCATACTGCAGTGTCTGAAGAAATGCCCTGGTAACTACCTGCAGGCTCTTAAAGGCATTCCCAGAACTTTGAGAATGATGTATGTACATAGTTATCAAAGCTACTTATGGAACAATGCAGCAAGTCTGCGCGTCAAAAATTATGGAACCAGCCAAGTTGTGTTGGGGGACTTGGTAAGTACAAAGGTAGATGCTGCAAAAAGAATGGTCGACAGTCTTACCTCTGAGCACAACGAAAGCAGCGAAGAGGCATTGGATTGTGACCAGGTAGATGATACTGCTGTTGTAGATCTTCCAGCTGAAAGGAGTGACCTTGTTAAGGTTGTAAGTATAGAGGATTTGGAAGCTGGAACTTACTCGACCAGTGACATCGTCCTCCCTCTACCTGGTTCAAGAGTCATCTACCCGTCTAATGACATTGCAGAAATTTATCATGATTTGGCAAAGAAGGACGGTATCAGCCTAACTGAGAGCATTCACGGTGTAAAGGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCTGGACAGGATACCCATGAACAAGCCGGTGGAGAAAGTTGGATCTACTGAGGAAATTGAAGATGAATCAATGAAATCTGATACTAACCCACATGATTCTGGTGAAACCAATTTGAAAGACCAGACAGATAGCAATGAGGCTGAAAAAGACACTGGAAATCCAGATTCTGAGCAGACACAGATGGCGCTTAAAATGGCACTCACTCTTCCATCTTCTTGTTATGCCACAATGGCAATCAGAGAACTATTAAAGACGTCAACTTCTGTTGCATATCACAAGACACTTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016556 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0040031 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:1901360 GO:1902494 GO:1990481 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TruD

Protein Analysis

715

Amino Acids

79.4

Weight (kDa)

5.76

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TruD	PF01142	223 - 497	4e-68	tRNA pseudouridine synthase D (TruD)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04820
fragaria_vesca	FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330
malus_domestica	MD04G1221700.v1.1 MD12G1237800.v1.1
prunus_persica	Prupe.6G340900_v2.0.a1
pyrus_communis	pycom04g19610 pycom04g19630 pycom12g21860 pycom12g21870
rosa_chinensis	RchiOBHm_Chr3g0451831
rosa_laevigata	RLG00000025646
rosa_multiflora	Rmu_sc0006510.1_g000014
rosa_roxburghii	Rroxscaffold_164G00436290 Rroxscaffold_6G00429000
rosa_rugosa	Rorug02G0636600 Rorug02G0636600
rosa_samantha	Rh3AG038100 Rh3BG039300 Rh3CG037800 Rh3DG038600
rosa_wichuraiana	Rw3G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2114
Acc36I	ACCTGC	1 cut(s)	1299
AccI	GTMKAC	3 cut(s)	528, 1125, 1461
AccII	CGCG	2 cut(s)	1231, 1383
AciI	CCGC	3 cut(s)	799, 974, 1229
AclWI	GGATC	5 cut(s)	440, 887, 1133, 1863, 1906
AcoI	YGGCCR	1 cut(s)	662
AcsI	RAATTY	4 cut(s)	499, 571, 1677, 1742
AcuI	CTGAAG	2 cut(s)	1002, 1289
AcyI	GRCGYC	1 cut(s)	2111
AfaI	GTAC	4 cut(s)	315, 1071, 1338, 1432
AfiI	CCNNNNNNNGG	2 cut(s)	1570, 1637
AflIII	ACRYGT	1 cut(s)	1777
AjiI	CACGTC	2 cut(s)	133, 1778
AjnI	CCWGG	4 cut(s)	163, 1279, 1515, 1636
Alw21I	GWGCWC	1 cut(s)	1482
Alw26I	GTCTC	2 cut(s)	42, 1844
AlwI	GGATC	5 cut(s)	440, 887, 1133, 1863, 1906
AlwNI	CAGNNNCTG	3 cut(s)	416, 1267, 2024
Ama87I	CYCGRG	2 cut(s)	55, 1176
AoxI	GGCC	3 cut(s)	662, 726, 913
ApeKI	GCWGC	7 cut(s)	854, 928, 1048, 1091, 1370, 1445, 1491
ApoI	RAATTY	4 cut(s)	499, 571, 1677, 1742
Asp700I	GAANNNNTTC	1 cut(s)	1063
AspLEI	GCGC	3 cut(s)	859, 1383, 2044
AspS9I	GGNCC	2 cut(s)	533, 913
AsuC2I	CCSGG	2 cut(s)	1177, 1178
AsuHPI	GGTGA	5 cut(s)	397, 434, 902, 1211, 1970
AsuNHI	GCTAGC	1 cut(s)	842
AvaI	CYCGRG	2 cut(s)	55, 1176
AvaII	GGWCC	1 cut(s)	533
AxyI	CCTNAGG	1 cut(s)	409
BaeI	ACNNNNGTAYC	2 cut(s)	1518, 1551
BalI	TGGCCA	1 cut(s)	664
Bbv12I	GWGCWC	1 cut(s)	1482
BbvI	GCAGC	7 cut(s)	841, 940, 1060, 1078, 1382, 1432, 1503
BccI	CCATC	7 cut(s)	221, 265, 413, 702, 1016, 2032, 2074
BceAI	ACGGC	2 cut(s)	19, 489
BciT130I	CCWGG	4 cut(s)	165, 1281, 1517, 1638
BciVI	GTATCC	1 cut(s)	1860
BclI	TGATCA	1 cut(s)	393
BcnI	CCSGG	2 cut(s)	1177, 1178
BcoDI	GTCTC	2 cut(s)	42, 1844
BfaI	CTAG	5 cut(s)	512, 752, 843, 1755, 2146
BfmI	CTRYAG	5 cut(s)	333, 1002, 1122, 1259, 1292
BfoI	RGCGCY	1 cut(s)	2045
BfuAI	ACCTGC	1 cut(s)	1299
BfuI	GTATCC	1 cut(s)	1860
BglI	GCCNNNNNGGC	1 cut(s)	2087
BglII	AGATCT	1 cut(s)	1540
BisI	GCNGC	7 cut(s)	855, 929, 1049, 1092, 1371, 1446, 1492
BlsI	GCNGC	7 cut(s)	856, 930, 1050, 1093, 1372, 1447, 1493
Bme1390I	CCNGG	6 cut(s)	165, 1177, 1178, 1281, 1517, 1638
Bme18I	GGWCC	1 cut(s)	533
BmeT110I	CYCGRG	2 cut(s)	55, 1176
BmgBI	CACGTC	2 cut(s)	133, 1778
BmgT120I	GGNCC	2 cut(s)	533, 913
BmiI	GGNNCC	3 cut(s)	580, 692, 1399
BmrFI	CCNGG	6 cut(s)	165, 1177, 1178, 1281, 1517, 1638
BmsI	GCATC	7 cut(s)	147, 361, 564, 738, 1108, 1162, 1432
BmtI	GCTAGC	1 cut(s)	846
BpuEI	CTTGAG	1 cut(s)	82
BpuMI	CCSGG	2 cut(s)	1177, 1178
BsaHI	GRCGYC	1 cut(s)	2111
BsaJI	CCNNGG	8 cut(s)	163, 172, 252, 729, 922, 1011, 1176, 1279
Bsc4I	CCNNNNNNNGG	2 cut(s)	1570, 1637
Bse118I	RCCGGY	1 cut(s)	1882
Bse1I	ACTGG	6 cut(s)	360, 434, 1201, 1614, 1768, 2014
Bse21I	CCTNAGG	1 cut(s)	409
Bse3DI	GCAATG	3 cut(s)	907, 1668, 1996
BseBI	CCWGG	4 cut(s)	165, 1281, 1517, 1638
BseDI	CCNNGG	8 cut(s)	163, 172, 252, 729, 922, 1011, 1176, 1279
BseGI	GGATG	3 cut(s)	232, 248, 555
BseLI	CCNNNNNNNGG	2 cut(s)	1570, 1637
BseMI	GCAATG	3 cut(s)	907, 1668, 1996
BseMII	CTCAG	8 cut(s)	258, 423, 700, 827, 1467, 1710, 1896, 2016
BseNI	ACTGG	6 cut(s)	360, 434, 1201, 1614, 1768, 2014
BseRI	GAGGAG	2 cut(s)	299, 978
BseXI	GCAGC	7 cut(s)	841, 940, 1060, 1078, 1382, 1432, 1503
BseYI	CCCAGC	1 cut(s)	156
BsgI	GTGCAG	1 cut(s)	1077
Bsh1236I	CGCG	2 cut(s)	1231, 1383
BshFI	GGCC	3 cut(s)	664, 728, 915
BsiHKAI	GWGCWC	1 cut(s)	1482
BsiHKCI	CYCGRG	2 cut(s)	55, 1176
BsiSI	CCGG	2 cut(s)	1177, 1883
BslFI	GGGAC	2 cut(s)	1225, 1433
BslI	CCNNNNNNNGG	2 cut(s)	1570, 1637
BsmAI	GTCTC	2 cut(s)	42, 1844
BsmBI	CGTCTC	2 cut(s)	42, 1844
BsmFI	GGGAC	2 cut(s)	1225, 1433
BsmI	GAATGC	2 cut(s)	1308, 1725
BsnI	GGCC	3 cut(s)	664, 728, 915
BsoBI	CYCGRG	2 cut(s)	55, 1176
Bsp1286I	GDGCHC	1 cut(s)	1482
Bsp1407I	TGTACA	1 cut(s)	1336
Bsp143I	GATC	8 cut(s)	393, 445, 602, 879, 1138, 1540, 1855, 1898
BspACI	CCGC	3 cut(s)	799, 974, 1229
BspANI	GGCC	3 cut(s)	664, 728, 915
BspCNI	CTCAG	8 cut(s)	259, 422, 699, 826, 1468, 1711, 1897, 2017
BspFNI	CGCG	2 cut(s)	1231, 1383
BspHI	TCATGA	1 cut(s)	1684
BspLI	GGNNCC	3 cut(s)	580, 692, 1399
BspMAI	CTGCAG	4 cut(s)	337, 1006, 1263, 1296
BspMI	ACCTGC	1 cut(s)	1299
BspOI	GCTAGC	1 cut(s)	846
BspPI	GGATC	5 cut(s)	440, 887, 1133, 1863, 1906
BsrDI	GCAATG	3 cut(s)	907, 1668, 1996
BsrFI	RCCGGY	1 cut(s)	1882
BsrGI	TGTACA	1 cut(s)	1336
BsrI	ACTGG	6 cut(s)	360, 434, 1201, 1614, 1768, 2014
BssAI	RCCGGY	1 cut(s)	1882
BssECI	CCNNGG	8 cut(s)	163, 172, 252, 729, 922, 1011, 1176, 1279
BssMI	GATC	8 cut(s)	393, 445, 602, 879, 1138, 1540, 1855, 1898
BssNI	GRCGYC	1 cut(s)	2111
BssT1I	CCWWGG	4 cut(s)	252, 729, 922, 1011
Bst2UI	CCWGG	4 cut(s)	165, 1281, 1517, 1638
Bst4CI	ACNGT	8 cut(s)	19, 118, 526, 533, 826, 1466, 1706, 1733
Bst6I	CTCTTC	2 cut(s)	1491, 2067
BstACI	GRCGYC	1 cut(s)	2111
BstAUI	TGTACA	1 cut(s)	1336
BstC8I	GCNNGC	4 cut(s)	840, 844, 1046, 1296
BstDEI	CTNAG	9 cut(s)	267, 409, 686, 813, 1217, 1476, 1719, 1905, 2025
BstDSI	CCRYGG	1 cut(s)	172
BstENI	CCTNNNNNAGG	1 cut(s)	1568
BstF5I	GGATG	3 cut(s)	232, 248, 555
BstFNI	CGCG	2 cut(s)	1231, 1383
BstH2I	RGCGCY	1 cut(s)	2045
BstHHI	GCGC	3 cut(s)	859, 1383, 2044
BstKTI	GATC	8 cut(s)	396, 448, 605, 882, 1141, 1543, 1858, 1901
BstMAI	GTCTC	2 cut(s)	42, 1844
BstMBI	GATC	8 cut(s)	393, 445, 602, 879, 1138, 1540, 1855, 1898
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 89, 1228, 1250, 2087
BstNI	CCWGG	4 cut(s)	165, 1281, 1517, 1638
BstNSI	RCATGY	2 cut(s)	674, 1163
BstSCI	CCNGG	6 cut(s)	163, 1175, 1176, 1279, 1515, 1636
BstSFI	CTRYAG	5 cut(s)	333, 1002, 1122, 1259, 1292
BstUI	CGCG	2 cut(s)	1231, 1383
BstV1I	GCAGC	7 cut(s)	841, 940, 1060, 1078, 1382, 1432, 1503
BstX2I	RGATCY	3 cut(s)	1540, 1855, 1898
BstXI	CCANNNNNNTGG	1 cut(s)	164
BstYI	RGATCY	3 cut(s)	1540, 1855, 1898
Bsu36I	CCTNAGG	1 cut(s)	409
BsuI	GTATCC	1 cut(s)	1860
BsuRI	GGCC	3 cut(s)	664, 728, 915
BtgI	CCRYGG	1 cut(s)	172
BtrI	CACGTC	2 cut(s)	133, 1778
BtsCI	GGATG	3 cut(s)	232, 248, 555
BtsI	GCAGTG	1 cut(s)	1268
BtsIMutI	CAGTG	6 cut(s)	367, 522, 1268, 1621, 1824, 2007
BveI	ACCTGC	1 cut(s)	1299
Cac8I	GCNNGC	4 cut(s)	840, 844, 1046, 1296
CaiI	CAGNNNCTG	3 cut(s)	416, 1267, 2024
CciI	TCATGA	1 cut(s)	1684
CfoI	GCGC	3 cut(s)	859, 1383, 2044
Cfr10I	RCCGGY	1 cut(s)	1882
Cfr13I	GGNCC	2 cut(s)	533, 913
Cfr9I	CCCGGG	1 cut(s)	1176
CseI	GACGC	1 cut(s)	1372
CsiI	ACCWGGT	2 cut(s)	1515, 1636
Csp6I	GTAC	4 cut(s)	314, 1070, 1337, 1431
CviAII	CATG	9 cut(s)	671, 934, 1082, 1129, 1160, 1685, 1759, 1873, 1949
CviQI	GTAC	4 cut(s)	314, 1070, 1337, 1431
DdeI	CTNAG	9 cut(s)	267, 409, 686, 813, 1217, 1476, 1719, 1905, 2025
DpnI	GATC	8 cut(s)	395, 447, 604, 881, 1140, 1542, 1857, 1900
DpnII	GATC	8 cut(s)	393, 445, 602, 879, 1138, 1540, 1855, 1898
EaeI	YGGCCR	1 cut(s)	662
Eam1104I	CTCTTC	2 cut(s)	1491, 2067
EarI	CTCTTC	2 cut(s)	1491, 2067
Eco130I	CCWWGG	4 cut(s)	252, 729, 922, 1011
Eco147I	AGGCCT	1 cut(s)	728
Eco47I	GGWCC	1 cut(s)	533
Eco57I	CTGAAG	2 cut(s)	1002, 1289
Eco81I	CCTNAGG	1 cut(s)	409
Eco88I	CYCGRG	2 cut(s)	55, 1176
EcoNI	CCTNNNNNAGG	1 cut(s)	1568
EcoO109I	RGGNCCY	1 cut(s)	913
EcoRI	GAATTC	2 cut(s)	571, 1742
EcoRII	CCWGG	4 cut(s)	163, 1279, 1515, 1636
EcoT14I	CCWWGG	4 cut(s)	252, 729, 922, 1011
EcoT22I	ATGCAT	1 cut(s)	557
ErhI	CCWWGG	4 cut(s)	252, 729, 922, 1011
Esp3I	CGTCTC	2 cut(s)	42, 1844
FaeI	CATG	9 cut(s)	674, 937, 1085, 1132, 1163, 1688, 1762, 1876, 1952
FalI	AAGNNNNNCTT	2 cut(s)	900, 932
FaqI	GGGAC	2 cut(s)	1225, 1433
FatI	CATG	9 cut(s)	670, 933, 1081, 1128, 1159, 1684, 1758, 1872, 1948
FbaI	TGATCA	1 cut(s)	393
FblI	GTMKAC	3 cut(s)	528, 1125, 1461
Fnu4HI	GCNGC	7 cut(s)	855, 929, 1049, 1092, 1371, 1446, 1492
FokI	GGATG	3 cut(s)	235, 239, 542
Fsp4HI	GCNGC	7 cut(s)	855, 929, 1049, 1092, 1371, 1446, 1492
FspBI	CTAG	5 cut(s)	512, 752, 843, 1755, 2146
GlaI	GCGC	3 cut(s)	858, 1382, 2043
GluI	GCNGC	7 cut(s)	855, 929, 1049, 1092, 1371, 1446, 1492
GsaI	CCCAGC	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	2045
HaeIII	GGCC	3 cut(s)	664, 728, 915
HapII	CCGG	2 cut(s)	1177, 1883
HgaI	GACGC	1 cut(s)	1372
HhaI	GCGC	3 cut(s)	859, 1383, 2044
Hin1I	GRCGYC	1 cut(s)	2111
Hin1II	CATG	9 cut(s)	674, 937, 1085, 1132, 1163, 1688, 1762, 1876, 1952
Hin6I	GCGC	3 cut(s)	857, 1381, 2042
HinP1I	GCGC	3 cut(s)	857, 1381, 2042
HincII	GTYRAC	3 cut(s)	529, 1462, 2115
HindII	GTYRAC	3 cut(s)	529, 1462, 2115
HpaII	CCGG	2 cut(s)	1177, 1883
HphI	GGTGA	5 cut(s)	397, 434, 902, 1211, 1970
Hpy166II	GTNNAC	4 cut(s)	529, 1126, 1462, 2115
Hpy188I	TCNGA	9 cut(s)	457, 655, 776, 982, 1269, 1477, 1936, 2026, 2096
Hpy8I	GTNNAC	4 cut(s)	529, 1126, 1462, 2115
Hpy99I	CGWCG	2 cut(s)	88, 533
HpyAV	CCTTC	4 cut(s)	98, 274, 926, 1693
HpyCH4III	ACNGT	8 cut(s)	19, 118, 526, 533, 826, 1466, 1706, 1733
HpyCH4IV	ACGT	3 cut(s)	132, 1777, 2111
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 89, 1228, 1250, 2087
HpyF3I	CTNAG	9 cut(s)	267, 409, 686, 813, 1217, 1476, 1719, 1905, 2025
HpySE526I	ACGT	3 cut(s)	132, 1777, 2111
Hsp92I	GRCGYC	1 cut(s)	2111
Hsp92II	CATG	9 cut(s)	674, 937, 1085, 1132, 1163, 1688, 1762, 1876, 1952
HspAI	GCGC	3 cut(s)	857, 1381, 2042
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	8 cut(s)	393, 445, 602, 879, 1138, 1540, 1855, 1898
LmnI	GCTCC	3 cut(s)	165, 578, 1088
Lsp1109I	GCAGC	7 cut(s)	841, 940, 1060, 1078, 1382, 1432, 1503
LweI	GCATC	7 cut(s)	147, 361, 564, 738, 1108, 1162, 1432
MabI	ACCWGGT	2 cut(s)	1515, 1636
MaeI	CTAG	5 cut(s)	512, 752, 843, 1755, 2146
MaeII	ACGT	3 cut(s)	132, 1777, 2111
MalI	GATC	8 cut(s)	395, 447, 604, 881, 1140, 1542, 1857, 1900
MboI	GATC	8 cut(s)	393, 445, 602, 879, 1138, 1540, 1855, 1898
MboII	GAAGA	7 cut(s)	995, 1282, 1508, 1535, 1928, 2054, 2061
MflI	RGATCY	3 cut(s)	1540, 1855, 1898
MhlI	GDGCHC	1 cut(s)	1482
MlsI	TGGCCA	1 cut(s)	664
MluNI	TGGCCA	1 cut(s)	664
MlyI	GAGTC	3 cut(s)	350, 1207, 1656
MmeI	TCCRAC	1 cut(s)	1876
Mox20I	TGGCCA	1 cut(s)	664
Mph1103I	ATGCAT	1 cut(s)	557
MroXI	GAANNNNTTC	1 cut(s)	1063
MscI	TGGCCA	1 cut(s)	664
MslI	CAYNNNNRTG	1 cut(s)	560
Msp20I	TGGCCA	1 cut(s)	664
MspA1I	CMGCKG	1 cut(s)	1550
MspI	CCGG	2 cut(s)	1177, 1883
MspR9I	CCNGG	6 cut(s)	165, 1177, 1178, 1281, 1517, 1638
Mva1269I	GAATGC	2 cut(s)	1308, 1725
MvaI	CCWGG	4 cut(s)	165, 1281, 1517, 1638
MvnI	CGCG	2 cut(s)	1231, 1383
MwoI	GCNNNNNNNGC	5 cut(s)	40, 89, 1228, 1250, 2087
NciI	CCSGG	2 cut(s)	1177, 1178
NdeII	GATC	8 cut(s)	393, 445, 602, 879, 1138, 1540, 1855, 1898
NheI	GCTAGC	1 cut(s)	842
NlaIII	CATG	9 cut(s)	674, 937, 1085, 1132, 1163, 1688, 1762, 1876, 1952
NlaIV	GGNNCC	3 cut(s)	580, 692, 1399
NmuCI	GTSAC	7 cut(s)	403, 514, 890, 1199, 1511, 1559, 1616
NsiI	ATGCAT	1 cut(s)	557
NspI	RCATGY	2 cut(s)	674, 1163
PaeR7I	CTCGAG	1 cut(s)	55
PagI	TCATGA	1 cut(s)	1684
PceI	AGGCCT	1 cut(s)	728
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 1491
PctI	GAATGC	2 cut(s)	1308, 1725
PdmI	GAANNNNTTC	1 cut(s)	1063
PfeI	GAWTC	9 cut(s)	177, 539, 777, 977, 1007, 1132, 1922, 1952, 2021
PflFI	GACNNNGTC	2 cut(s)	524, 1622
PkrI	GCNGC	7 cut(s)	856, 930, 1050, 1093, 1372, 1447, 1493
PleI	GAGTC	3 cut(s)	349, 1207, 1655
PpsI	GAGTC	3 cut(s)	349, 1207, 1655
Psp6I	CCWGG	4 cut(s)	163, 1279, 1515, 1636
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	4 cut(s)	163, 1279, 1515, 1636
PspN4I	GGNNCC	3 cut(s)	580, 692, 1399
PspPI	GGNCC	2 cut(s)	533, 913
PspXI	VCTCGAGB	1 cut(s)	55
PstI	CTGCAG	4 cut(s)	337, 1006, 1263, 1296
PstNI	CAGNNNCTG	3 cut(s)	416, 1267, 2024
PsuI	RGATCY	3 cut(s)	1540, 1855, 1898
PsyI	GACNNNGTC	2 cut(s)	524, 1622
PvuII	CAGCTG	1 cut(s)	1550
RsaI	GTAC	4 cut(s)	315, 1071, 1338, 1432
RsaNI	GTAC	4 cut(s)	314, 1070, 1337, 1431
RseI	CAYNNNNRTG	1 cut(s)	560
SalI	GTCGAC	2 cut(s)	527, 1460
SatI	GCNGC	7 cut(s)	855, 929, 1049, 1092, 1371, 1446, 1492
Sau3AI	GATC	8 cut(s)	393, 445, 602, 879, 1138, 1540, 1855, 1898
Sau96I	GGNCC	2 cut(s)	533, 913
SbfI	CCTGCAGG	1 cut(s)	1296
SchI	GAGTC	3 cut(s)	350, 1207, 1656
ScrFI	CCNGG	6 cut(s)	165, 1177, 1178, 1281, 1517, 1638
SdaI	CCTGCAGG	1 cut(s)	1296
SduI	GDGCHC	1 cut(s)	1482
SexAI	ACCWGGT	2 cut(s)	1515, 1636
SfaNI	GCATC	7 cut(s)	147, 361, 564, 738, 1108, 1162, 1432
SfcI	CTRYAG	5 cut(s)	333, 1002, 1122, 1259, 1292
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	533
SlaI	CTCGAG	1 cut(s)	55
SmaI	CCCGGG	1 cut(s)	1178
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	2 cut(s)	55, 61
SmoI	CTYRAG	2 cut(s)	55, 61
Sse8387I	CCTGCAGG	1 cut(s)	1296
SseBI	AGGCCT	1 cut(s)	728
SsiI	CCGC	3 cut(s)	799, 974, 1229
SspI	AATATT	2 cut(s)	390, 1184
SspMI	CTAG	5 cut(s)	512, 752, 843, 1755, 2146
StuI	AGGCCT	1 cut(s)	728
StyD4I	CCNGG	6 cut(s)	163, 1175, 1176, 1279, 1515, 1636
StyI	CCWWGG	4 cut(s)	252, 729, 922, 1011
TaaI	ACNGT	8 cut(s)	19, 118, 526, 533, 826, 1466, 1706, 1733
TaiI	ACGT	3 cut(s)	135, 1780, 2114
TaqI	TCGA	4 cut(s)	56, 528, 1461, 1610
TatI	WGTACW	2 cut(s)	1336, 1430
TfiI	GAWTC	9 cut(s)	177, 539, 777, 977, 1007, 1132, 1922, 1952, 2021
TscAI	CASTG	6 cut(s)	367, 529, 1268, 1621, 1831, 2014
TseFI	GTSAC	7 cut(s)	403, 514, 890, 1199, 1511, 1559, 1616
TseI	GCWGC	7 cut(s)	854, 928, 1048, 1091, 1370, 1445, 1491
Tsp45I	GTSAC	7 cut(s)	403, 514, 890, 1199, 1511, 1559, 1616
TspDTI	ATGAA	9 cut(s)	17, 125, 138, 228, 230, 1018, 1889, 1935, 1943
TspGWI	ACGGA	3 cut(s)	161, 548, 1868
TspMI	CCCGGG	1 cut(s)	1176
TspRI	CASTG	6 cut(s)	367, 529, 1268, 1621, 1831, 2014
Tth111I	GACNNNGTC	2 cut(s)	524, 1622
VpaK11BI	GGWCC	1 cut(s)	533
XagI	CCTNNNNNAGG	1 cut(s)	1568
XapI	RAATTY	4 cut(s)	499, 571, 1677, 1742
XceI	RCATGY	2 cut(s)	674, 1163
XhoI	CTCGAG	1 cut(s)	55
XmaI	CCCGGG	1 cut(s)	1176
XmiI	GTMKAC	3 cut(s)	528, 1125, 1461
XmnI	GAANNNNTTC	1 cut(s)	1063
XspI	CTAG	5 cut(s)	512, 752, 843, 1755, 2146
ZraI	GACGTC	1 cut(s)	2112
Zsp2I	ATGCAT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.