Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006222

Physical Location & Seq

Genomic Coordinates Forward (+)

21293309 .. 21295541

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTGGCTTAAGCCCGCACCATCGTGCTTCTCTATGCTAAAACCCTACTGCTCTGCAACTCCTCCACCACCACCACCGCCAACCACCGCCTTCAAACCCCTAATGGCAACAAAAACCACGGAGGAATCCGACGTTGGCATCTTCTGCTACATCTCTCAGCTCCCCGGATTTCGCGGCGTTTTAAAGCAAAGTTCTCTCTTTCGGTTTCATTCGTGGCTTGCACTATCTGTCTTCCAGGCAGTGCATAATTTTTTTAAGCAGCACTTCAAGTTTCTTGTCACCGACACAGTTGATGGACCAGATGCTTCATCAAAATGCATCCGGGTGAGAATAAATTCAGGAGGACAGAACAGCAGAGGCAGAAATTCCAGAAAAAGAAAAGAAAGAGGTGATAAACCTTTCGATAGCAGGGGTTCAGAGGATTGGTCGGAGCACGTTGGCAAGTTCCTTAGGTTTCATCTTTACAAGGAGAACAAGGATACACAGGAAGCCTTAGGAGTTATAGGAAAAATGCTTGGTGTCCAGAGTCAGTCGTTGCTATCTGCTTCCTTCCTGCATGCATGGACACAGTTAACACATTCAATATTAAACGTGTATTTTATTAATCTATTGTTGTCTTTGATTTTGTTAAGGTCCATTTGCAGCACCTTTGTCCCTGCTGATGTTATTAAATTAAAGTTTTCTGTGGTCTTCATTGAATATTTAGCAATTACCTGTATGGTACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016556 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0040031 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:1901360 GO:1902494 GO:1990481 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TruD

Protein Analysis

243

Amino Acids

27.31

Weight (kDa)

9.59

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04820
fragaria_vesca	FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330
malus_domestica	MD04G1221700.v1.1 MD12G1237800.v1.1
prunus_persica	Prupe.6G340900_v2.0.a1
pyrus_communis	pycom04g19610 pycom04g19630 pycom12g21860 pycom12g21870
rosa_chinensis	RchiOBHm_Chr3g0451831
rosa_laevigata	RLG00000025646
rosa_multiflora	Rmu_sc0006510.1_g000014
rosa_roxburghii	Rroxscaffold_164G00436290 Rroxscaffold_6G00429000
rosa_rugosa	Rorug02G0636600 Rorug02G0636600
rosa_samantha	Rh3AG038100 Rh3BG039300 Rh3CG037800 Rh3DG038600
rosa_wichuraiana	Rw3G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	174
AciI	CCGC	4 cut(s)	15, 77, 87, 174
AcsI	RAATTY	2 cut(s)	334, 364
AfaI	GTAC	1 cut(s)	723
AflII	CTTAAG	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	4 cut(s)	94, 268, 582, 698
AjnI	CCWGG	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	1 cut(s)	435
ApeKI	GCWGC	2 cut(s)	259, 642
ApoI	RAATTY	2 cut(s)	334, 364
AseI	ATTAAT	1 cut(s)	603
Asp700I	GAANNNNTTC	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	296, 633
AsuC2I	CCSGG	2 cut(s)	165, 323
AsuHPI	GGTGA	3 cut(s)	271, 337, 401
AvaII	GGWCC	2 cut(s)	296, 633
AxyI	CCTNAGG	2 cut(s)	449, 493
BbsI	GAAGAC	2 cut(s)	223, 682
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	271, 654
BccI	CCATC	2 cut(s)	28, 287
BciT130I	CCWGG	1 cut(s)	236
BciVI	GTATCC	1 cut(s)	472
BcnI	CCSGG	2 cut(s)	165, 323
BfrI	CTTAAG	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	3 cut(s)	175, 260, 643
BlsI	GCNGC	3 cut(s)	176, 261, 644
Bme1390I	CCNGG	3 cut(s)	165, 236, 323
Bme18I	GGWCC	2 cut(s)	296, 633
BmgT120I	GGNCC	2 cut(s)	296, 633
BmrFI	CCNGG	3 cut(s)	165, 236, 323
BmsI	GCATC	3 cut(s)	147, 292, 327
BpiI	GAAGAC	2 cut(s)	223, 682
BpuMI	CCSGG	2 cut(s)	165, 323
BsaJI	CCNNGG	2 cut(s)	117, 163
Bse21I	CCTNAGG	2 cut(s)	449, 493
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	117, 163
BseGI	GGATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	271, 654
Bsh1236I	CGCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	2 cut(s)	165, 322
BslFI	GGGAC	1 cut(s)	638
BsmFI	GGGAC	1 cut(s)	638
Bsp1286I	GDGCHC	1 cut(s)	435
BspACI	CCGC	4 cut(s)	15, 77, 87, 174
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	174
BspTI	CTTAAG	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	117, 163
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	289, 570
BstAFI	CTTAAG	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	15, 219, 558
BstDEI	CTNAG	3 cut(s)	156, 449, 493
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	3 cut(s)	163, 234, 321
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	271, 654
BstV2I	GAAGAC	2 cut(s)	223, 682
Bsu36I	CCTNAGG	2 cut(s)	449, 493
BsuI	GTATCC	1 cut(s)	472
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	318
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	3 cut(s)	15, 219, 558
Cfr13I	GGNCC	2 cut(s)	296, 633
Csp6I	GTAC	1 cut(s)	722
CviAII	CATG	2 cut(s)	557, 561
CviJI	RGCY	5 cut(s)	7, 13, 160, 217, 491
CviKI_1	RGCY	5 cut(s)	7, 13, 160, 217, 491
CviQI	GTAC	1 cut(s)	722
DdeI	CTNAG	3 cut(s)	156, 449, 493
DraI	TTTAAA	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	296, 633
Eco81I	CCTNAGG	2 cut(s)	449, 493
EcoRII	CCWGG	1 cut(s)	234
EcoT22I	ATGCAT	2 cut(s)	320, 562
FaeI	CATG	2 cut(s)	560, 564
FaiI	YATR	6 cut(s)	35, 246, 503, 558, 562, 719
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	2 cut(s)	556, 560
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	3 cut(s)	175, 260, 643
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	3 cut(s)	175, 260, 643
GluI	GCNGC	3 cut(s)	175, 260, 643
HapII	CCGG	2 cut(s)	165, 322
Hin1II	CATG	2 cut(s)	560, 564
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HinfI	GANTC	2 cut(s)	125, 526
HpaI	GTTAAC	1 cut(s)	573
HpaII	CCGG	2 cut(s)	165, 322
HphI	GGTGA	3 cut(s)	271, 337, 401
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	3 cut(s)	130, 418, 430
Hpy188III	TCNNGA	3 cut(s)	339, 369, 523
Hpy8I	GTNNAC	1 cut(s)	573
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	100, 559
HpyCH4III	ACNGT	2 cut(s)	289, 570
HpyCH4IV	ACGT	3 cut(s)	132, 435, 591
HpyCH4V	TGCA	7 cut(s)	56, 221, 244, 318, 556, 560, 642
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	3 cut(s)	156, 449, 493
HpySE526I	ACGT	3 cut(s)	132, 435, 591
Hsp92II	CATG	2 cut(s)	560, 564
KspAI	GTTAAC	1 cut(s)	573
LmnI	GCTCC	2 cut(s)	165, 430
Lsp1109I	GCAGC	2 cut(s)	271, 654
LweI	GCATC	3 cut(s)	147, 292, 327
MaeII	ACGT	3 cut(s)	132, 435, 591
MaeIII	GTNAC	1 cut(s)	277
MboII	GAAGA	3 cut(s)	133, 223, 682
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	5 cut(s)	247, 334, 364, 671, 708
MlyI	GAGTC	1 cut(s)	535
MmeI	TCCRAC	2 cut(s)	153, 408
MnlI	CCTC	6 cut(s)	72, 115, 335, 350, 380, 412
Mph1103I	ATGCAT	2 cut(s)	320, 562
MroXI	GAANNNNTTC	1 cut(s)	334
MseI	TTAA	9 cut(s)	9, 182, 255, 572, 587, 603, 629, 669, 674
MslI	CAYNNNNRTG	3 cut(s)	22, 313, 323
MspCI	CTTAAG	1 cut(s)	8
MspI	CCGG	2 cut(s)	165, 322
MspR9I	CCNGG	3 cut(s)	165, 236, 323
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	144
NciI	CCSGG	2 cut(s)	165, 323
NlaIII	CATG	2 cut(s)	560, 564
NmuCI	GTSAC	1 cut(s)	277
NsiI	ATGCAT	2 cut(s)	320, 562
NspI	RCATGY	1 cut(s)	560
OliI	CACNNNNGTG	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	176, 261, 644
PleI	GAGTC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	534
PshBI	ATTAAT	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	296, 633
RsaI	GTAC	1 cut(s)	723
RsaNI	GTAC	1 cut(s)	722
RseI	CAYNNNNRTG	3 cut(s)	22, 313, 323
SaqAI	TTAA	9 cut(s)	9, 182, 255, 572, 587, 603, 629, 669, 674
SatI	GCNGC	3 cut(s)	175, 260, 643
Sau96I	GGNCC	2 cut(s)	296, 633
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	3 cut(s)	165, 236, 323
SduI	GDGCHC	1 cut(s)	435
SfaNI	GCATC	3 cut(s)	147, 292, 327
SinI	GGWCC	2 cut(s)	296, 633
SmiMI	CAYNNNNRTG	3 cut(s)	22, 313, 323
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SphI	GCATGC	1 cut(s)	560
Sse9I	AATT	5 cut(s)	247, 334, 364, 671, 708
SsiI	CCGC	4 cut(s)	15, 77, 87, 174
SspI	AATATT	2 cut(s)	585, 701
StyD4I	CCNGG	3 cut(s)	163, 234, 321
TaaI	ACNGT	2 cut(s)	289, 570
TaiI	ACGT	3 cut(s)	135, 438, 594
TaqI	TCGA	1 cut(s)	402
TasI	AATT	5 cut(s)	247, 334, 364, 671, 708
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	9 cut(s)	9, 182, 255, 572, 587, 603, 629, 669, 674
Tru9I	TTAA	9 cut(s)	9, 182, 255, 572, 587, 603, 629, 669, 674
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	259, 642
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	4 cut(s)	197, 297, 446, 682
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	8
VpaK11BI	GGWCC	2 cut(s)	296, 633
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	2 cut(s)	334, 364
XceI	RCATGY	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	334
Zsp2I	ATGCAT	2 cut(s)	320, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.