Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006510.1

Orthogroup ID

OG0006222

Physical Location & Seq

Genomic Coordinates Forward (+)

63941 .. 66416

Gene Structure 2476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006510.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atgaatgtccaggaagttgttataataggttttcctctagttgctgctgtcctggaactccttgaggttaataaccctgctgctgaagtccctaaactggtcctcgaagtcctcattgagattagtaaccctgttgctgtccttgaaccggtccctgaagtccttgtggttaacaaccctgttgctgaagtccctgagtcggtccttgaagtcatccttgagattaataaccttgcttctgtccttgaactggtccatgaattccttgacgtcagccttagtttaatccgttggggtagcagaagaacagctactatccttcaactggtccctgaagtccttgacaccgaccctgtacgcgtgctgttttctgaccgtcggatcgactcacgcgacaaggatttaacaaaacgagacgtacaggatttaaattaccaaaacggtgcgttgaataaaatgtggcttaaccctgtatcgtcgtgcttcccgaatctaaaaccctactcctactcccctgcaactcctccaccaccaccaaccaccaccgtgaaagctctgatggccatgaagactacggaggaatccgacgtcggaatattctgttacatctctcagctccctggctttcgcggcattcttaagcaaaggtattctgattttatggtgaatgaagtcgataccgaaggaaatgtggttcatttgaccaacttggaagctccaccagagctagtgaaggaaaatggagcgaagatgcaggatagtgcaagtaaagattatagtgctgaaatcgaaaagtttaggtctcttgctggtggtgaggatgttgagcgattggaagctttgatcagccagattaattctggaagtgaagatggtgttatgcctattgttctttcgccagactatgataaagctcatcgaacggcagtgcataatttttttaaggagaacttaaagttccttgtcaccgatgcagtggatggaccggatgcttcgtcaaaatgcatccgtgtaagactaaattcaggagggcagaatggcagaggcaggaattcgaaaaagcgaaaagaaaggggtgataaaccatttgatagcagaggtactgatgactggtcagagcatgttgccaagttcctaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016556 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0040031 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:1901360 GO:1902494 GO:1990481 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TruD

Protein Analysis

380

Amino Acids

42.17

Weight (kDa)

4.99

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04820
fragaria_vesca	FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330
malus_domestica	MD04G1221700.v1.1 MD12G1237800.v1.1
prunus_persica	Prupe.6G340900_v2.0.a1
pyrus_communis	pycom04g19610 pycom04g19630 pycom12g21860 pycom12g21870
rosa_chinensis	RchiOBHm_Chr3g0451831
rosa_laevigata	RLG00000025646
rosa_multiflora	Rmu_sc0006510.1_g000014
rosa_roxburghii	Rroxscaffold_164G00436290 Rroxscaffold_6G00429000
rosa_rugosa	Rorug02G0636600 Rorug02G0636600
rosa_samantha	Rh3AG038100 Rh3BG039300 Rh3CG037800 Rh3DG038600
rosa_wichuraiana	Rw3G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AatII	GACGTC	2 cut(s)	273, 591
AccII	CGCG	3 cut(s)	360, 393, 630
AciI	CCGC	1 cut(s)	630
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	3 cut(s)	260, 1021, 1051
AcuI	CTGAAG	4 cut(s)	105, 177, 207, 354
AcyI	GRCGYC	2 cut(s)	270, 588
AfaI	GTAC	3 cut(s)	357, 420, 1102
AfiI	CCNNNNNNNGG	5 cut(s)	97, 148, 199, 250, 325
AflII	CTTAAG	1 cut(s)	638
AflIII	ACRYGT	1 cut(s)	358
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	5 cut(s)	146, 209, 248, 323, 451
AjnI	CCWGG	3 cut(s)	9, 51, 619
AleI	CACNNNNGTG	1 cut(s)	545
AloI	GAACNNNNNNTCC	2 cut(s)	678, 710
AluBI	AGCT	7 cut(s)	311, 554, 616, 716, 727, 839, 914
AluI	AGCT	7 cut(s)	311, 554, 616, 716, 727, 839, 914
Alw26I	GTCTC	2 cut(s)	408, 807
AlwI	GGATC	1 cut(s)	389
AoxI	GGCC	1 cut(s)	561
ApeKI	GCWGC	2 cut(s)	44, 80
ApoI	RAATTY	3 cut(s)	260, 1021, 1051
AseI	ATTAAT	2 cut(s)	225, 855
AsiGI	ACCGGT	1 cut(s)	148
AspS9I	GGNCC	6 cut(s)	100, 151, 202, 253, 328, 983
AsuHPI	GGTGA	4 cut(s)	676, 827, 958, 1088
AsuII	TTCGAA	1 cut(s)	1055
AvaII	GGWCC	6 cut(s)	100, 151, 202, 253, 328, 983
AxyI	CCTNAGG	1 cut(s)	1136
BalI	TGGCCA	1 cut(s)	563
BarI	GAAGNNNNNNTAC	2 cut(s)	295, 327
BbsI	GAAGAC	1 cut(s)	575
BbvI	GCAGC	2 cut(s)	31, 67
BccI	CCATC	3 cut(s)	553, 866, 974
BceAI	ACGGC	1 cut(s)	939
BciT130I	CCWGG	3 cut(s)	11, 53, 621
BclI	TGATCA	1 cut(s)	843
BcoDI	GTCTC	2 cut(s)	408, 807
BfaI	CTAG	2 cut(s)	38, 728
BfrI	CTTAAG	1 cut(s)	638
BisI	GCNGC	3 cut(s)	45, 81, 631
BlsI	GCNGC	3 cut(s)	46, 82, 632
Bme1390I	CCNGG	3 cut(s)	11, 53, 621
Bme18I	GGWCC	6 cut(s)	100, 151, 202, 253, 328, 983
BmgT120I	GGNCC	6 cut(s)	100, 151, 202, 253, 328, 983
BmiI	GGNNCC	2 cut(s)	153, 330
BmrFI	CCNGG	3 cut(s)	11, 53, 621
BmsI	GCATC	4 cut(s)	741, 961, 979, 1014
BpiI	GAAGAC	1 cut(s)	575
Bpu14I	TTCGAA	1 cut(s)	1055
BpuEI	CTTGAG	2 cut(s)	83, 239
BsaHI	GRCGYC	2 cut(s)	270, 588
BsaI	GGTCTC	1 cut(s)	807
BsaJI	CCNNGG	1 cut(s)	619
BsaWI	WCCGGW	2 cut(s)	148, 985
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 148, 199, 250, 325
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	4 cut(s)	102, 255, 330, 1115
Bse21I	CCTNAGG	1 cut(s)	1136
BseBI	CCWGG	3 cut(s)	11, 53, 621
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	5 cut(s)	213, 826, 985, 994, 1005
BseLI	CCNNNNNNNGG	5 cut(s)	97, 148, 199, 250, 325
BseMII	CTCAG	2 cut(s)	186, 626
BseNI	ACTGG	4 cut(s)	102, 255, 330, 1115
BseRI	GAGGAG	1 cut(s)	513
BseXI	GCAGC	2 cut(s)	31, 67
Bsh1236I	CGCG	3 cut(s)	360, 393, 630
BshFI	GGCC	1 cut(s)	563
BshTI	ACCGGT	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	149, 986
BslFI	GGGAC	4 cut(s)	74, 137, 176, 314
BslI	CCNNNNNNNGG	5 cut(s)	97, 148, 199, 250, 325
BsmAI	GTCTC	2 cut(s)	408, 807
BsmBI	CGTCTC	1 cut(s)	408
BsmFI	GGGAC	4 cut(s)	74, 137, 176, 314
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	1 cut(s)	563
Bso31I	GGTCTC	1 cut(s)	807
Bsp119I	TTCGAA	1 cut(s)	1055
Bsp143I	GATC	2 cut(s)	381, 843
BspACI	CCGC	1 cut(s)	630
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	2 cut(s)	187, 625
BspFNI	CGCG	3 cut(s)	360, 393, 630
BspLI	GGNNCC	2 cut(s)	153, 330
BspPI	GGATC	1 cut(s)	389
BspT104I	TTCGAA	1 cut(s)	1055
BspTI	CTTAAG	1 cut(s)	638
BspTNI	GGTCTC	1 cut(s)	807
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	4 cut(s)	102, 255, 330, 1115
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	2 cut(s)	381, 843
BssNI	GRCGYC	2 cut(s)	270, 588
Bst2UI	CCWGG	3 cut(s)	11, 53, 621
Bst4CI	ACNGT	3 cut(s)	377, 443, 547
BstACI	GRCGYC	2 cut(s)	270, 588
BstAFI	CTTAAG	1 cut(s)	638
BstBI	TTCGAA	1 cut(s)	1055
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	4 cut(s)	195, 278, 612, 1136
BstF5I	GGATG	5 cut(s)	213, 826, 985, 994, 1005
BstFNI	CGCG	3 cut(s)	360, 393, 630
BstKTI	GATC	2 cut(s)	384, 846
BstMAI	GTCTC	2 cut(s)	408, 807
BstMBI	GATC	2 cut(s)	381, 843
BstMWI	GCNNNNNNNGC	2 cut(s)	560, 630
BstNI	CCWGG	3 cut(s)	11, 53, 621
BstNSI	RCATGY	1 cut(s)	1124
BstSCI	CCNGG	3 cut(s)	9, 51, 619
BstUI	CGCG	3 cut(s)	360, 393, 630
BstV1I	GCAGC	2 cut(s)	31, 67
BstV2I	GAAGAC	1 cut(s)	575
Bsu36I	CCTNAGG	1 cut(s)	1136
BsuRI	GGCC	1 cut(s)	563
BtsCI	GGATG	5 cut(s)	213, 826, 985, 994, 1005
BtsI	GCAGTG	2 cut(s)	933, 981
BtsIMutI	CAGTG	2 cut(s)	933, 981
Cac8I	GCNNGC	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	6 cut(s)	100, 151, 202, 253, 328, 983
Csp6I	GTAC	3 cut(s)	356, 419, 1101
CspAI	ACCGGT	1 cut(s)	148
CviAII	CATG	3 cut(s)	257, 565, 1121
CviQI	GTAC	3 cut(s)	356, 419, 1101
DdeI	CTNAG	4 cut(s)	195, 278, 612, 1136
DpnI	GATC	2 cut(s)	383, 845
DpnII	GATC	2 cut(s)	381, 843
DraI	TTTAAA	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	561
Eco31I	GGTCTC	1 cut(s)	807
Eco47I	GGWCC	6 cut(s)	100, 151, 202, 253, 328, 983
Eco57I	CTGAAG	4 cut(s)	105, 177, 207, 354
Eco81I	CCTNAGG	1 cut(s)	1136
EcoRI	GAATTC	2 cut(s)	260, 1051
EcoRII	CCWGG	3 cut(s)	9, 51, 619
EcoT22I	ATGCAT	1 cut(s)	1007
Esp3I	CGTCTC	1 cut(s)	408
FaeI	CATG	3 cut(s)	260, 568, 1124
FaiI	YATR	9 cut(s)	23, 258, 566, 662, 777, 881, 906, 933, 1122
FalI	AAGNNNNNCTT	4 cut(s)	201, 233, 935, 967
FaqI	GGGAC	4 cut(s)	74, 137, 176, 314
FatI	CATG	3 cut(s)	256, 564, 1120
FbaI	TGATCA	1 cut(s)	843
Fnu4HI	GCNGC	3 cut(s)	45, 81, 631
FokI	GGATG	5 cut(s)	200, 833, 992, 992, 1001
Fsp4HI	GCNGC	3 cut(s)	45, 81, 631
FspBI	CTAG	2 cut(s)	38, 728
GluI	GCNGC	3 cut(s)	45, 81, 631
HaeIII	GGCC	1 cut(s)	563
HapII	CCGG	2 cut(s)	149, 986
Hin1I	GRCGYC	2 cut(s)	270, 588
Hin1II	CATG	3 cut(s)	260, 568, 1124
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	837
HinfI	GANTC	4 cut(s)	197, 386, 490, 581
HpaI	GTTAAC	1 cut(s)	172
HpaII	CCGG	2 cut(s)	149, 986
HphI	GGTGA	4 cut(s)	676, 827, 958, 1088
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	7 cut(s)	373, 381, 558, 586, 593, 655, 1117
Hpy188III	TCNNGA	3 cut(s)	487, 861, 1026
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	4 cut(s)	381, 481, 590, 593
HpyAV	CCTTC	3 cut(s)	329, 677, 727
HpyCH4III	ACNGT	3 cut(s)	377, 443, 547
HpyCH4IV	ACGT	3 cut(s)	270, 417, 588
HpyCH4V	TGCA	6 cut(s)	518, 754, 764, 931, 974, 1005
HpyF10VI	GCNNNNNNNGC	2 cut(s)	560, 630
HpyF3I	CTNAG	4 cut(s)	195, 278, 612, 1136
HpySE526I	ACGT	3 cut(s)	270, 417, 588
Hsp92I	GRCGYC	2 cut(s)	270, 588
Hsp92II	CATG	3 cut(s)	260, 568, 1124
Ksp22I	TGATCA	1 cut(s)	843
KspAI	GTTAAC	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	381, 843
LmnI	GCTCC	3 cut(s)	621, 721, 743
Lsp1109I	GCAGC	2 cut(s)	31, 67
LweI	GCATC	4 cut(s)	741, 961, 979, 1014
MaeI	CTAG	2 cut(s)	38, 728
MaeII	ACGT	3 cut(s)	270, 417, 588
MaeIII	GTNAC	3 cut(s)	125, 602, 964
MalI	GATC	2 cut(s)	383, 845
MboI	GATC	2 cut(s)	381, 843
MboII	GAAGA	4 cut(s)	315, 580, 760, 881
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	6 cut(s)	260, 430, 856, 934, 1021, 1051
MluI	ACGCGT	1 cut(s)	358
MluNI	TGGCCA	1 cut(s)	563
MlyI	GAGTC	2 cut(s)	206, 380
MmeI	TCCRAC	3 cut(s)	359, 571, 609
Mox20I	TGGCCA	1 cut(s)	563
Mph1103I	ATGCAT	1 cut(s)	1007
MscI	TGGCCA	1 cut(s)	563
MslI	CAYNNNNRTG	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	563
MspCI	CTTAAG	1 cut(s)	638
MspI	CCGG	2 cut(s)	149, 986
MspR9I	CCNGG	3 cut(s)	11, 53, 621
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	3 cut(s)	11, 53, 621
MvnI	CGCG	3 cut(s)	360, 393, 630
MwoI	GCNNNNNNNGC	2 cut(s)	560, 630
NdeII	GATC	2 cut(s)	381, 843
NlaIII	CATG	3 cut(s)	260, 568, 1124
NlaIV	GGNNCC	2 cut(s)	153, 330
NmuCI	GTSAC	1 cut(s)	964
NsiI	ATGCAT	1 cut(s)	1007
NspI	RCATGY	1 cut(s)	1124
NspV	TTCGAA	1 cut(s)	1055
OliI	CACNNNNGTG	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 485
PctI	GAATGC	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	490, 581
PfoI	TCCNGGA	2 cut(s)	9, 51
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	46, 82, 632
PleI	GAGTC	2 cut(s)	205, 380
PpsI	GAGTC	2 cut(s)	205, 380
PshBI	ATTAAT	2 cut(s)	225, 855
PsiI	TTATAA	1 cut(s)	23
Psp6I	CCWGG	3 cut(s)	9, 51, 619
PspGI	CCWGG	3 cut(s)	9, 51, 619
PspN4I	GGNNCC	2 cut(s)	153, 330
PspPI	GGNCC	6 cut(s)	100, 151, 202, 253, 328, 983
RsaI	GTAC	3 cut(s)	357, 420, 1102
RsaNI	GTAC	3 cut(s)	356, 419, 1101
RseI	CAYNNNNRTG	1 cut(s)	545
SatI	GCNGC	3 cut(s)	45, 81, 631
Sau3AI	GATC	2 cut(s)	381, 843
Sau96I	GGNCC	6 cut(s)	100, 151, 202, 253, 328, 983
SchI	GAGTC	2 cut(s)	206, 380
ScrFI	CCNGG	3 cut(s)	11, 53, 621
SfaNI	GCATC	4 cut(s)	741, 961, 979, 1014
SfuI	TTCGAA	1 cut(s)	1055
SinI	GGWCC	6 cut(s)	100, 151, 202, 253, 328, 983
SmiI	ATTTAAAT	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	3 cut(s)	62, 218, 638
SmoI	CTYRAG	3 cut(s)	62, 218, 638
Sse9I	AATT	6 cut(s)	260, 430, 856, 934, 1021, 1051
SsiI	CCGC	1 cut(s)	630
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	2 cut(s)	38, 728
StyD4I	CCNGG	3 cut(s)	9, 51, 619
SwaI	ATTTAAAT	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	377, 443, 547
TaiI	ACGT	3 cut(s)	273, 420, 591
TaqI	TCGA	6 cut(s)	105, 384, 675, 789, 919, 1055
TaqII	GACCGA	1 cut(s)	190
TasI	AATT	6 cut(s)	260, 430, 856, 934, 1021, 1051
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	2 cut(s)	490, 581
TscAI	CASTG	2 cut(s)	933, 981
TseFI	GTSAC	1 cut(s)	964
TseI	GCWGC	2 cut(s)	44, 80
Tsp45I	GTSAC	1 cut(s)	964
TspDTI	ATGAA	5 cut(s)	17, 273, 581, 684, 686
TspGWI	ACGGA	3 cut(s)	278, 590, 998
TspRI	CASTG	2 cut(s)	933, 981
Vha464I	CTTAAG	1 cut(s)	638
VpaK11BI	GGWCC	6 cut(s)	100, 151, 202, 253, 328, 983
VspI	ATTAAT	2 cut(s)	225, 855
XapI	RAATTY	3 cut(s)	260, 1021, 1051
XceI	RCATGY	1 cut(s)	1124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XspI	CTAG	2 cut(s)	38, 728
ZraI	GACGTC	2 cut(s)	271, 589
Zsp2I	ATGCAT	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.