Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006222

Physical Location & Seq

Genomic Coordinates Reverse (-)

2525273 .. 2533481

Gene Structure 8209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G002840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2187 bp

ATGTGGCTTAACCCTGTATCGTCGTGCTTCCCGAATCTAAAACCCTACTCCTACTCCCCTGCAACTCCTCCACCACCACCAACCACCACCGTGAAAGCTCTGATGGCCATGAAGACTACGGAGGAATCCGACGTCGGAATATTCTGTTACATCTCTCAGCTCCCTGGCTTTCGCGGCATTCTTAAGCAAAGGTATTCTGATTTTATGGTGAATGAAGTCGATACCGAAGGAAATGTGGTTCATTTGACCAACTTGGAAGCTCCACCAGAGGTAGTGAAGGAAAATGGAGCGAAGATGCAGGATAGTGCAAGTAAAGATTATAGTGCTGAAATCGAAAAGTTTAGGTCTCTTGCTGGTGGTGAGGATGTTGAGCGATTGGAAGCTTTGATCAGCCAGATTAATTCTGGAAGTGAAGATGGTGTTATGCCTATTGTTCTTTTGCCAGACTATGATAAAGCTCATCGAACGGCAGTGCATAATTTTTTTAAGGAGAACTTAAAGTTCCTTGTCACCGATGCAGTGGATGGACCGGATGCTTTGTCAAAATGCATCCGTGTAAGACTAAATTCAGGAGGGCAGAATGGCAGAGGCAGGAATTCAAAAAAGCGAAAAGAAAGGGGTGATAAACCATTTGATAGCAGAGGTACTGATGACTGGTCAGAGCATGTTGCCAAGTTCCTAAGGTTTCATCTTTACAAGGAGAACAAGGATACACAGGAAGCTTTAGGAATTATAGGAAAGATGCTTGGAATACAGCCAAGGGCATTTGGGTTTGCGGGTACAAAGGATAAGCGTGCTGTTTCAAGTCAAAGGGTAACCGTCTTTAAGCAGTTTGCAAGTAGATTAGCTGCTCTTAATGATAGGTTGATTGGTATCAAAGTAGGCGACTTTTGCTATGTGAAAGAAGGACTTTCTCTTGGCCAACTCCTGGGAAACCGCTTTACAATTACATTGAGAGGAGTTGTTGCAGATTCTGAAGATACGATCCACGCATCTGCAAATGCCTTAGGAAAACAGGGATTTGTTAACTACTTTGGTTTACAAAGGTTTGGAAGTGGTTCAGTTCCAACACACCTTATTGGAGCTTCACTACTGAGAGGAGAGTGGAAATCTACTGTAAGCATGATGCTTGAACCGAGAGAAGGGGAAAGAGATGTGATTACGGAGGCACGGAAGTACTACAAGGAAACTAATGATATTGACGGGACCTTGAGGAAATTACCTCGACATCTTGTTGCTGAAAGAGCTATTCTGCAGTGTCTGAAGAAATGTCCTGGAAACTACTCTCAGGCTCTGAAAGCTATTCCCAGAACTTTGAGGATGATGTATGTACATAGTTACCAGAGCTATTTGTGGAACCATGCAGCAAGTATGAGAGTGCAAAAATATGGAACTGACCGAGTTGTGGTGGGAGACTTGGTATTTTGTAAAGGAAATGAAACTGAGAAGGTGACAGGAATTGTTAGTTCTGAGTGTGTGGATGAAAATGTTAATGATGAAAACTGTGATGATACATTTGATCCTAGTCATTTGGATGACATATCAGAAACAAATATTCCTGAGGCGAGGGTTAATCTTGTAAAGGCTGTAACTGCAGAAGATATCGACAATGGGAATTACACGATTGATGATATTGTCCTTCCTCTGCCAGGATCAAGGGTCATCTTTCCAGAAAATGATATTGCTGCTGTTTTTCATGATCTAGCAAAGAAGGATGCGATCAGCTTGACAGAGAGCGTGCATAATGTCAAGGAATTCTCAATAACGAATGTGACTGGAAGTTACAGGCGGGTCTTCCAAAAACCAATGGACTTTGAATGGGAATTACTAAAGTATATTGATGGCAATATACCATTGGTGGAGACAGACTTTGAAAAAATTGACAAAACCAAGCCTGTGAATGTACACAAAGAGGACCCAACAAGTGTAAATGGAGATGGAAGTTTACATGATAGCATCAAACAGTCAGAGTGCTCTGCCAATGATATAGAACTGCAGAAAAGAGACATTGAGGTGGAAGACAAGGGAGAAAAGTTGCCACAAGTTGAATCTCTCGGTGGCACTAATCCTCAGGGAACTCAGATTGCTCTGAAGTTGAGCTTTACTCTCCCATCATCTTGTTATGCAACAATGGCCATCAGAGAGCTACTGAAGACTTCGACATCTGTTGCTTTCACAAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016556 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0040031 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:1901360 GO:1902494 GO:1990481 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TruD

Protein Analysis

728

Amino Acids

80.95

Weight (kDa)

5.94

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TruD	PF01142	224 - 485	8.7e-70	tRNA pseudouridine synthase D (TruD)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04820
fragaria_vesca	FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330
malus_domestica	MD04G1221700.v1.1 MD12G1237800.v1.1
prunus_persica	Prupe.6G340900_v2.0.a1
pyrus_communis	pycom04g19610 pycom04g19630 pycom12g21860 pycom12g21870
rosa_chinensis	RchiOBHm_Chr3g0451831
rosa_laevigata	RLG00000025646
rosa_multiflora	Rmu_sc0006510.1_g000014
rosa_roxburghii	Rroxscaffold_164G00436290 Rroxscaffold_6G00429000
rosa_rugosa	Rorug02G0636600 Rorug02G0636600
rosa_samantha	Rh3AG038100 Rh3BG039300 Rh3CG037800 Rh3DG038600
rosa_wichuraiana	Rw3G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	135
AccB7I	CCANNNNNTGG	1 cut(s)	928
AccII	CGCG	1 cut(s)	174
AciI	CCGC	4 cut(s)	174, 776, 937, 1789
AclWI	GGATC	3 cut(s)	979, 1514, 1660
AcoI	YGGCCR	3 cut(s)	105, 919, 2133
AcsI	RAATTY	3 cut(s)	565, 595, 1754
AcuI	CTGAAG	4 cut(s)	996, 1283, 2111, 2171
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	5 cut(s)	646, 781, 1178, 1332, 1905
AfiI	CCNNNNNNNGG	4 cut(s)	928, 1142, 1405, 1649
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	6 cut(s)	600, 804, 1133, 1817, 1874, 2048
AjnI	CCWGG	4 cut(s)	163, 927, 1273, 1648
AleI	CACNNNNGTG	1 cut(s)	89
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
Alw21I	GWGCWC	1 cut(s)	1976
Alw26I	GTCTC	4 cut(s)	351, 1407, 1856, 1998
AlwI	GGATC	3 cut(s)	979, 1514, 1660
AlwNI	CAGNNNCTG	3 cut(s)	974, 1261, 1294
AoxI	GGCC	3 cut(s)	105, 919, 2133
ApeKI	GCWGC	3 cut(s)	848, 1364, 1685
ApoI	RAATTY	3 cut(s)	565, 595, 1754
AseI	ATTAAT	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	1057
AspS9I	GGNCC	3 cut(s)	527, 1206, 1915
AsuHPI	GGTGA	5 cut(s)	220, 371, 502, 632, 1462
AvaII	GGWCC	3 cut(s)	527, 1206, 1915
AxyI	CCTNAGG	4 cut(s)	680, 1006, 1560, 2070
BalI	TGGCCA	3 cut(s)	107, 921, 2135
BbsI	GAAGAC	4 cut(s)	119, 1786, 2025, 2159
Bbv12I	GWGCWC	1 cut(s)	1976
BbvI	GCAGC	3 cut(s)	835, 1376, 1672
BccI	CCATC	7 cut(s)	97, 410, 518, 1835, 1931, 2119, 2144
BceAI	ACGGC	1 cut(s)	483
BciT130I	CCWGG	4 cut(s)	165, 929, 1275, 1650
BciVI	GTATCC	1 cut(s)	703
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	4 cut(s)	351, 1407, 1856, 1998
BfaI	CTAG	2 cut(s)	1524, 1703
BfmI	CTRYAG	3 cut(s)	1253, 1593, 1994
BfrI	CTTAAG	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	4 cut(s)	175, 849, 1365, 1686
BlsI	GCNGC	4 cut(s)	176, 850, 1366, 1687
BmcAI	AGTACT	1 cut(s)	1178
Bme1390I	CCNGG	4 cut(s)	165, 929, 1275, 1650
Bme18I	GGWCC	3 cut(s)	527, 1206, 1915
BmgT120I	GGNCC	3 cut(s)	527, 1206, 1915
BmiI	GGNNCC	3 cut(s)	1207, 1358, 1917
BmrFI	CCNGG	4 cut(s)	165, 929, 1275, 1650
BmsI	GCATC	9 cut(s)	285, 505, 523, 558, 732, 1001, 1116, 1705, 1965
BpiI	GAAGAC	4 cut(s)	119, 1786, 2025, 2159
BplI	GAGNNNNNCTC	2 cut(s)	2089, 2121
BpuEI	CTTGAG	1 cut(s)	1231
BsaBI	GATNNNNATC	1 cut(s)	872
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	163, 758, 928
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 1404, 1434
Bsc4I	CCNNNNNNNGG	4 cut(s)	928, 1142, 1405, 1649
Bse1I	ACTGG	2 cut(s)	659, 1780
Bse21I	CCTNAGG	4 cut(s)	680, 1006, 1560, 2070
Bse8I	GATNNNNATC	1 cut(s)	872
BseBI	CCWGG	4 cut(s)	165, 929, 1275, 1650
BseDI	CCNNGG	3 cut(s)	163, 758, 928
BseGI	GGATG	8 cut(s)	370, 529, 538, 549, 1326, 1486, 1540, 1720
BseJI	GATNNNNATC	1 cut(s)	872
BseLI	CCNNNNNNNGG	4 cut(s)	928, 1142, 1405, 1649
BseMII	CTCAG	8 cut(s)	170, 1085, 1301, 1434, 1461, 1551, 2084, 2093
BseNI	ACTGG	2 cut(s)	659, 1780
BseRI	GAGGAG	3 cut(s)	57, 972, 1113
BseXI	GCAGC	3 cut(s)	835, 1376, 1672
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	107, 921, 2135
BsiHKAI	GWGCWC	1 cut(s)	1976
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	1219
BslI	CCNNNNNNNGG	4 cut(s)	928, 1142, 1405, 1649
BsmAI	GTCTC	4 cut(s)	351, 1407, 1856, 1998
BsmFI	GGGAC	1 cut(s)	1219
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	107, 921, 2135
Bso31I	GGTCTC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	1976
Bsp1407I	TGTACA	2 cut(s)	1330, 1903
Bsp143I	GATC	6 cut(s)	387, 984, 1519, 1652, 1699, 1719
BspACI	CCGC	4 cut(s)	174, 776, 937, 1789
BspANI	GGCC	3 cut(s)	107, 921, 2135
BspCNI	CTCAG	8 cut(s)	169, 1086, 1300, 1435, 1462, 1552, 2083, 2092
BspFNI	CGCG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	1696
BspLI	GGNNCC	3 cut(s)	1207, 1358, 1917
BspMAI	CTGCAG	3 cut(s)	1257, 1597, 1998
BspPI	GGATC	3 cut(s)	979, 1514, 1660
BspTI	CTTAAG	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	351
BsrGI	TGTACA	2 cut(s)	1330, 1903
BsrI	ACTGG	2 cut(s)	659, 1780
BssECI	CCNNGG	3 cut(s)	163, 758, 928
BssMI	GATC	6 cut(s)	387, 984, 1519, 1652, 1699, 1719
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	758
Bst2UI	CCWGG	4 cut(s)	165, 929, 1275, 1650
Bst4CI	ACNGT	5 cut(s)	91, 820, 1117, 1505, 1965
BstACI	GRCGYC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	182
BstAUI	TGTACA	2 cut(s)	1330, 1903
BstC8I	GCNNGC	2 cut(s)	795, 1739
BstEII	GGTNACC	1 cut(s)	814
BstENI	CCTNNNNNAGG	1 cut(s)	1647
BstF5I	GGATG	8 cut(s)	370, 529, 538, 549, 1326, 1486, 1540, 1720
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	6 cut(s)	390, 987, 1522, 1655, 1702, 1722
BstMAI	GTCTC	4 cut(s)	351, 1407, 1856, 1998
BstMBI	GATC	6 cut(s)	387, 984, 1519, 1652, 1699, 1719
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 174, 891, 1244, 1298, 1592, 2132
BstNI	CCWGG	4 cut(s)	165, 929, 1275, 1650
BstNSI	RCATGY	1 cut(s)	668
BstPI	GGTNACC	1 cut(s)	814
BstSCI	CCNGG	4 cut(s)	163, 927, 1273, 1648
BstSFI	CTRYAG	3 cut(s)	1253, 1593, 1994
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	835, 1376, 1672
BstV2I	GAAGAC	4 cut(s)	119, 1786, 2025, 2159
Bsu36I	CCTNAGG	4 cut(s)	680, 1006, 1560, 2070
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	107, 921, 2135
BtsCI	GGATG	8 cut(s)	370, 529, 538, 549, 1326, 1486, 1540, 1720
BtsI	GCAGTG	3 cut(s)	477, 525, 1262
BtsIMutI	CAGTG	3 cut(s)	477, 525, 1262
Cac8I	GCNNGC	2 cut(s)	795, 1739
CaiI	CAGNNNCTG	3 cut(s)	974, 1261, 1294
CciI	TCATGA	1 cut(s)	1696
Cfr13I	GGNCC	3 cut(s)	527, 1206, 1915
Csp6I	GTAC	5 cut(s)	645, 780, 1177, 1331, 1904
CviAII	CATG	6 cut(s)	109, 665, 1123, 1361, 1697, 1949
CviQI	GTAC	5 cut(s)	645, 780, 1177, 1331, 1904
DpnI	GATC	6 cut(s)	389, 986, 1521, 1654, 1701, 1721
DpnII	GATC	6 cut(s)	387, 984, 1519, 1652, 1699, 1719
EaeI	YGGCCR	3 cut(s)	105, 919, 2133
Eco130I	CCWWGG	1 cut(s)	758
Eco31I	GGTCTC	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	1603
Eco47I	GGWCC	3 cut(s)	527, 1206, 1915
Eco57I	CTGAAG	4 cut(s)	996, 1283, 2111, 2171
Eco81I	CCTNAGG	4 cut(s)	680, 1006, 1560, 2070
Eco91I	GGTNACC	1 cut(s)	814
EcoNI	CCTNNNNNAGG	1 cut(s)	1647
EcoO109I	RGGNCCY	2 cut(s)	1206, 1915
EcoO65I	GGTNACC	1 cut(s)	814
EcoRI	GAATTC	2 cut(s)	595, 1754
EcoRII	CCWGG	4 cut(s)	163, 927, 1273, 1648
EcoRV	GATATC	1 cut(s)	1603
EcoT14I	CCWWGG	1 cut(s)	758
EcoT22I	ATGCAT	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	6 cut(s)	112, 668, 1126, 1364, 1700, 1952
FalI	AAGNNNNNCTT	6 cut(s)	479, 511, 894, 926, 2084, 2116
FaqI	GGGAC	1 cut(s)	1219
FatI	CATG	6 cut(s)	108, 664, 1122, 1360, 1696, 1948
FauI	CCCGC	2 cut(s)	769, 1782
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	175, 849, 1365, 1686
FokI	GGATG	8 cut(s)	377, 536, 536, 545, 1333, 1493, 1547, 1727
Fsp4HI	GCNGC	4 cut(s)	175, 849, 1365, 1686
FspBI	CTAG	2 cut(s)	1524, 1703
GluI	GCNGC	4 cut(s)	175, 849, 1365, 1686
HaeIII	GGCC	3 cut(s)	107, 921, 2135
HapII	CCGG	1 cut(s)	530
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	6 cut(s)	112, 668, 1126, 1364, 1700, 1952
HincII	GTYRAC	1 cut(s)	1027
HindII	GTYRAC	1 cut(s)	1027
HindIII	AAGCTT	2 cut(s)	381, 720
HinfI	GANTC	4 cut(s)	34, 125, 971, 2048
HpaI	GTTAAC	1 cut(s)	1027
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	5 cut(s)	220, 371, 502, 632, 1462
Hpy166II	GTNNAC	4 cut(s)	1027, 1040, 1906, 1946
Hpy188III	TCNNGA	6 cut(s)	31, 405, 570, 1559, 1670, 1697
Hpy8I	GTNNAC	4 cut(s)	1027, 1040, 1906, 1946
Hpy99I	CGWCG	3 cut(s)	25, 134, 137
HpyAV	CCTTC	7 cut(s)	221, 271, 899, 1136, 1441, 1649, 1705
HpyCH4III	ACNGT	5 cut(s)	91, 820, 1117, 1505, 1965
HpyCH4IV	ACGT	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 174, 891, 1244, 1298, 1592, 2132
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	6 cut(s)	112, 668, 1126, 1364, 1700, 1952
Ksp22I	TGATCA	1 cut(s)	387
KspAI	GTTAAC	1 cut(s)	1027
Kzo9I	GATC	6 cut(s)	387, 984, 1519, 1652, 1699, 1719
LmnI	GCTCC	4 cut(s)	165, 265, 287, 1082
Lsp1109I	GCAGC	3 cut(s)	835, 1376, 1672
LweI	GCATC	9 cut(s)	285, 505, 523, 558, 732, 1001, 1116, 1705, 1965
MaeI	CTAG	2 cut(s)	1524, 1703
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	8 cut(s)	146, 508, 814, 1337, 1450, 1588, 1771, 1781
MalI	GATC	6 cut(s)	389, 986, 1521, 1654, 1701, 1721
MboI	GATC	6 cut(s)	387, 984, 1519, 1652, 1699, 1719
MboII	GAAGA	9 cut(s)	124, 304, 425, 989, 1276, 1610, 1786, 2030, 2164
MhlI	GDGCHC	1 cut(s)	1976
MlsI	TGGCCA	3 cut(s)	107, 921, 2135
MluNI	TGGCCA	3 cut(s)	107, 921, 2135
MmeI	TCCRAC	3 cut(s)	115, 153, 1091
Mox20I	TGGCCA	3 cut(s)	107, 921, 2135
Mph1103I	ATGCAT	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	1057
MscI	TGGCCA	3 cut(s)	107, 921, 2135
MslI	CAYNNNNRTG	3 cut(s)	89, 1533, 2012
Msp20I	TGGCCA	3 cut(s)	107, 921, 2135
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	4 cut(s)	165, 929, 1275, 1650
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	4 cut(s)	165, 929, 1275, 1650
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	7 cut(s)	104, 174, 891, 1244, 1298, 1592, 2132
NdeII	GATC	6 cut(s)	387, 984, 1519, 1652, 1699, 1719
NlaIII	CATG	6 cut(s)	112, 668, 1126, 1364, 1700, 1952
NlaIV	GGNNCC	3 cut(s)	1207, 1358, 1917
NmuCI	GTSAC	3 cut(s)	508, 1450, 1771
NsiI	ATGCAT	1 cut(s)	551
NspI	RCATGY	1 cut(s)	668
OliI	CACNNNNGTG	1 cut(s)	89
PagI	TCATGA	1 cut(s)	1696
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PctI	GAATGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	1057
PfeI	GAWTC	4 cut(s)	34, 125, 971, 2048
PflMI	CCANNNNNTGG	1 cut(s)	928
PfoI	TCCNGGA	1 cut(s)	1273
PkrI	GCNGC	4 cut(s)	176, 850, 1366, 1687
PpuMI	RGGWCCY	2 cut(s)	1206, 1915
PshBI	ATTAAT	1 cut(s)	399
Psp5II	RGGWCCY	2 cut(s)	1206, 1915
Psp6I	CCWGG	4 cut(s)	163, 927, 1273, 1648
PspEI	GGTNACC	1 cut(s)	814
PspGI	CCWGG	4 cut(s)	163, 927, 1273, 1648
PspN4I	GGNNCC	3 cut(s)	1207, 1358, 1917
PspPI	GGNCC	3 cut(s)	527, 1206, 1915
PspPPI	RGGWCCY	2 cut(s)	1206, 1915
PstI	CTGCAG	3 cut(s)	1257, 1597, 1998
PstNI	CAGNNNCTG	3 cut(s)	974, 1261, 1294
RsaI	GTAC	5 cut(s)	646, 781, 1178, 1332, 1905
RsaNI	GTAC	5 cut(s)	645, 780, 1177, 1331, 1904
RseI	CAYNNNNRTG	3 cut(s)	89, 1533, 2012
SatI	GCNGC	4 cut(s)	175, 849, 1365, 1686
Sau3AI	GATC	6 cut(s)	387, 984, 1519, 1652, 1699, 1719
Sau96I	GGNCC	3 cut(s)	527, 1206, 1915
ScaI	AGTACT	1 cut(s)	1178
ScrFI	CCNGG	4 cut(s)	165, 929, 1275, 1650
SduI	GDGCHC	1 cut(s)	1976
SfaNI	GCATC	9 cut(s)	285, 505, 523, 558, 732, 1001, 1116, 1705, 1965
SfcI	CTRYAG	3 cut(s)	1253, 1593, 1994
SinI	GGWCC	3 cut(s)	527, 1206, 1915
SmiMI	CAYNNNNRTG	3 cut(s)	89, 1533, 2012
SmlI	CTYRAG	2 cut(s)	182, 1210
SmoI	CTYRAG	2 cut(s)	182, 1210
SsiI	CCGC	4 cut(s)	174, 776, 937, 1789
SspI	AATATT	2 cut(s)	141, 1555
SspMI	CTAG	2 cut(s)	1524, 1703
StyD4I	CCNGG	4 cut(s)	163, 927, 1273, 1648
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	5 cut(s)	91, 820, 1117, 1505, 1965
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	6 cut(s)	219, 333, 463, 1225, 1605, 2159
TaqII	GACCGA	1 cut(s)	1413
TatI	WGTACW	3 cut(s)	1176, 1330, 1903
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	4 cut(s)	34, 125, 971, 2048
TscAI	CASTG	3 cut(s)	477, 525, 1262
TseFI	GTSAC	3 cut(s)	508, 1450, 1771
TseI	GCWGC	3 cut(s)	848, 1364, 1685
Tsp45I	GTSAC	3 cut(s)	508, 1450, 1771
TspDTI	ATGAA	8 cut(s)	125, 228, 230, 677, 1452, 1497, 1512, 1685
TspGWI	ACGGA	4 cut(s)	134, 542, 1178, 1186
TspRI	CASTG	3 cut(s)	477, 525, 1262
Van91I	CCANNNNNTGG	1 cut(s)	928
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	3 cut(s)	527, 1206, 1915
VspI	ATTAAT	1 cut(s)	399
XagI	CCTNNNNNAGG	1 cut(s)	1647
XapI	RAATTY	3 cut(s)	565, 595, 1754
XceI	RCATGY	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	1057
XspI	CTAG	2 cut(s)	1524, 1703
ZraI	GACGTC	1 cut(s)	133
ZrmI	AGTACT	1 cut(s)	1178
Zsp2I	ATGCAT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.