pycom12g21860

Pseudouridine synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
22972219 .. 22976048
3830 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g21860.6

Sequence Viewer

Length: 1206 bp
ATGTGGCTTAAGCCCGTACCATCATGCTTCTCTATGCTAAAACCCTACTGCTCTGCTACTCCTCCACCACCACCGCTAACCACGGCCTTAAAAGCCCTAATGGCGACAAAAACCACGGAGGAATCCGACGTCGGAATCGTCTGCTACATCTCTCAGCTCCCTGGATTTCGCGGCATTTTAAAGCAAAGGTATTCGGATTTTATGGTAAACGAAGTAGATAAGGAGGGAAATGTTGTTCATTTGACCAACTTGGATGCGCCGGTGGAGGCAGTTCAGGAAAGTGGAACAACGACAGGTGATGGTACAAGTAAAGATCATACTACCGAAATTGAATCATTTAGAGCTCTTGCTGATCCTAATGATGCTGAGCGCTTGGAAACTTTTATCAAACAAATTAATTCCGGTGGGGAAGATGGTGTTATGCCTATTGTTCTTTCCCCGGATTATGATAAATCTCATCGAACGGCAGTGCATAATTTTTTTAAGCAGCACTTCAAATTCCTTGTCACCGACACAGTTGATGGACCAGATGCTTCATCAAAATGCATCCGGGTGAGAATGAATTCAGGTGGGCAGAACAGCAGAGGCAGAAATTCCAGAAAACGAAAAGAAAGAGGTGATAAACCTTTTGATAGCAGGGGTTTGGAGGATTGGTCAGAGCACGTTGGCAAATTCCTTAGGTTTCATCTTTACAAGGAGAACAAGGATACACAGGAAGCCTTAGGAGTTATAGGAAAGATGCTTGGTGTCCAGCCAAGGTCCTTTGGGTTTGCGGGTACAAAGGATAAGCGTGCTGTCACAACTCAGAGGGTAACCGTTTTTAAGAAGCTTGCTAGTAAATTAGCTGCTCTTAATGATAGGTTGATCGGTATCAAAGTAGGTGACTTCTGTTATGTGACAGAAGGACTTGTCCTCGGCCAACTCTTGGGAAATCGGTTTACAATTACATTGAGAGGAGTTGTTGCAGATTCTGAAGATACCATCAAAGCCTCCGCAAGTGCCTTGGGAAGGCAGGGATTTATTAACTACTTTGGTTTACAATCAGCGATTTGGAAGCGGTTCTGTGCCAACTCACCTAATTGGAGGTTCACTACTCAGAGGAGAGTGGAAATCTACTGTAAGCATGTTCCTGCAGTGCTGAGATCCAAGAGAAGGGGTACAAAAGAATATGATTACAGAGGCACGAGAATATTACAAGGAAACTAA

Protein Analysis

402

Amino Acids

44.8

Weight (kDa)

9.5

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 925
AccII CGCG 1 cut(s) 171
AciI CCGC 5 cut(s) 74, 171, 773, 993, 1057
AclWI GGATC 2 cut(s) 347, 1137
AcoI YGGCCR 1 cut(s) 916
AcsI RAATTY 4 cut(s) 497, 562, 592, 671
AcuI CTGAAG 1 cut(s) 993
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 4 cut(s) 18, 304, 778, 1159
AfeI AGCGCT 1 cut(s) 371
AfiI CCNNNNNNNGG 3 cut(s) 925, 1008, 1152
AflII CTTAAG 1 cut(s) 8
AgsI TTSAA 2 cut(s) 332, 496
AjnI CCWGG 1 cut(s) 160
AloI GAACNNNNNNTCC 2 cut(s) 219, 251
AluBI AGCT 4 cut(s) 157, 344, 829, 845
AluI AGCT 4 cut(s) 157, 344, 829, 845
Alw21I GWGCWC 2 cut(s) 346, 663
AlwI GGATC 2 cut(s) 347, 1137
AlwNI CAGNNNCTG 1 cut(s) 971
Aor51HI AGCGCT 1 cut(s) 371
AoxI GGCC 2 cut(s) 84, 916
ApeKI GCWGC 2 cut(s) 487, 845
ApoI RAATTY 4 cut(s) 497, 562, 592, 671
ArsI GACNNNNNNTTYG 2 cut(s) 489, 521
AseI ATTAAT 1 cut(s) 396
Asp700I GAANNNNTTC 2 cut(s) 562, 1058
AspLEI GCGC 2 cut(s) 259, 372
AspS9I GGNCC 2 cut(s) 524, 759
AsuC2I CCSGG 2 cut(s) 440, 551
AsuHPI GGTGA 6 cut(s) 308, 499, 565, 629, 893, 1065
AvaII GGWCC 2 cut(s) 524, 759
AxyI CCTNAGG 2 cut(s) 677, 721
BanII GRGCYC 1 cut(s) 346
BauI CACGAG 1 cut(s) 1183
Bbv12I GWGCWC 2 cut(s) 346, 663
BbvI GCAGC 2 cut(s) 499, 832
BccI CCATC 5 cut(s) 28, 293, 407, 515, 989
BceAI ACGGC 2 cut(s) 99, 480
BciT130I CCWGG 1 cut(s) 162
BciVI GTATCC 1 cut(s) 700
BcnI CCSGG 2 cut(s) 440, 551
BfaI CTAG 1 cut(s) 834
BfmI CTRYAG 1 cut(s) 1131
BfoI RGCGCY 1 cut(s) 373
BfrI CTTAAG 1 cut(s) 8
BfuI GTATCC 1 cut(s) 700
BglI GCCNNNNNGGC 1 cut(s) 101
BisI GCNGC 3 cut(s) 172, 488, 846
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 3 cut(s) 173, 489, 847
Bme1390I CCNGG 3 cut(s) 162, 440, 551
Bme18I GGWCC 2 cut(s) 524, 759
BmgT120I GGNCC 2 cut(s) 524, 759
BmrFI CCNGG 3 cut(s) 162, 440, 551
BmsI GCATC 5 cut(s) 244, 352, 520, 555, 729
Bpu1102I GCTNAGC 1 cut(s) 366
BpuMI CCSGG 2 cut(s) 440, 551
BsaBI GATNNNNATC 1 cut(s) 869
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 7 cut(s) 81, 114, 160, 438, 755, 913, 1002
BsaWI WCCGGW 1 cut(s) 401
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 3 cut(s) 925, 1008, 1152
Bse118I RCCGGY 1 cut(s) 259
Bse21I CCTNAGG 2 cut(s) 677, 721
Bse8I GATNNNNATC 1 cut(s) 869
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 7 cut(s) 81, 114, 160, 438, 755, 913, 1002
BseGI GGATG 2 cut(s) 259, 546
BseJI GATNNNNATC 1 cut(s) 869
BseLI CCNNNNNNNGG 3 cut(s) 925, 1008, 1152
BseMII CTCAG 5 cut(s) 167, 357, 818, 1109, 1130
BseRI GAGGAG 3 cut(s) 51, 969, 1114
BseXI GCAGC 2 cut(s) 499, 832
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 2 cut(s) 86, 918
BsiHKAI GWGCWC 2 cut(s) 346, 663
BsiSI CCGG 4 cut(s) 260, 402, 440, 550
BslI CCNNNNNNNGG 3 cut(s) 925, 1008, 1152
BsnI GGCC 2 cut(s) 86, 918
Bsp1286I GDGCHC 2 cut(s) 346, 663
Bsp143I GATC 4 cut(s) 313, 352, 864, 1142
Bsp1720I GCTNAGC 1 cut(s) 366
BspACI CCGC 5 cut(s) 74, 171, 773, 993, 1057
BspANI GGCC 2 cut(s) 86, 918
BspCNI CTCAG 5 cut(s) 166, 358, 817, 1108, 1131
BspFNI CGCG 1 cut(s) 171
BspMAI CTGCAG 1 cut(s) 1135
BspPI GGATC 2 cut(s) 347, 1137
BspTI CTTAAG 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 7 cut(s) 81, 114, 160, 438, 755, 913, 1002
BssMI GATC 4 cut(s) 313, 352, 864, 1142
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 1183
BssT1I CCWWGG 2 cut(s) 755, 1002
Bst2BI CACGAG 1 cut(s) 1183
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 517, 817, 1118
BstACI GRCGYC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 792, 831
BstDEI CTNAG 7 cut(s) 153, 366, 677, 721, 804, 1095, 1139
BstDSI CCRYGG 2 cut(s) 81, 114
BstEII GGTNACC 1 cut(s) 811
BstENI CCTNNNNNAGG 1 cut(s) 1006
BstF5I GGATG 2 cut(s) 259, 546
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 373
BstHHI GCGC 2 cut(s) 259, 372
BstKTI GATC 4 cut(s) 316, 355, 867, 1145
BstMBI GATC 4 cut(s) 313, 352, 864, 1142
BstMWI GCNNNNNNNGC 2 cut(s) 92, 101
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 1127
BstPI GGTNACC 1 cut(s) 811
BstSCI CCNGG 3 cut(s) 160, 438, 549
BstSFI CTRYAG 1 cut(s) 1131
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 499, 832
BstX2I RGATCY 1 cut(s) 1142
BstYI RGATCY 1 cut(s) 1142
Bsu36I CCTNAGG 2 cut(s) 677, 721
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 2 cut(s) 86, 918
BtgI CCRYGG 2 cut(s) 81, 114
BtsCI GGATG 2 cut(s) 259, 546
BtsI GCAGTG 2 cut(s) 474, 1140
BtsIMutI CAGTG 2 cut(s) 474, 1140
Cac8I GCNNGC 2 cut(s) 792, 831
CaiI CAGNNNCTG 1 cut(s) 971
CfoI GCGC 2 cut(s) 259, 372
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 524, 759
Csp6I GTAC 4 cut(s) 17, 303, 777, 1158
CviAII CATG 2 cut(s) 24, 1124
CviQI GTAC 4 cut(s) 17, 303, 777, 1158
DdeI CTNAG 7 cut(s) 153, 366, 677, 721, 804, 1095, 1139
DpnI GATC 4 cut(s) 315, 354, 866, 1144
DpnII GATC 4 cut(s) 313, 352, 864, 1142
DraI TTTAAA 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 916
Ecl136II GAGCTC 1 cut(s) 344
Eco130I CCWWGG 2 cut(s) 755, 1002
Eco24I GRGCYC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 524, 759
Eco47III AGCGCT 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 993
Eco81I CCTNAGG 2 cut(s) 677, 721
Eco91I GGTNACC 1 cut(s) 811
EcoICRI GAGCTC 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 1006
EcoO109I RGGNCCY 1 cut(s) 759
EcoO65I GGTNACC 1 cut(s) 811
EcoRI GAATTC 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 755, 1002
EcoT22I ATGCAT 1 cut(s) 548
EcoT38I GRGCYC 1 cut(s) 346
ErhI CCWWGG 2 cut(s) 755, 1002
FaeI CATG 2 cut(s) 27, 1127
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FatI CATG 2 cut(s) 23, 1123
FauI CCCGC 1 cut(s) 766
Fnu4HI GCNGC 3 cut(s) 172, 488, 846
FokI GGATG 2 cut(s) 266, 533
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 3 cut(s) 172, 488, 846
FspBI CTAG 1 cut(s) 834
GlaI GCGC 2 cut(s) 258, 371
GluI GCNGC 3 cut(s) 172, 488, 846
HaeII RGCGCY 1 cut(s) 373
HaeIII GGCC 2 cut(s) 86, 918
HapII CCGG 4 cut(s) 260, 402, 440, 550
HhaI GCGC 2 cut(s) 259, 372
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 27, 1127
Hin6I GCGC 2 cut(s) 257, 370
HinP1I GCGC 2 cut(s) 257, 370
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 4 cut(s) 122, 135, 332, 968
HpaII CCGG 4 cut(s) 260, 402, 440, 550
HphI GGTGA 6 cut(s) 308, 499, 565, 629, 893, 1065
Hpy166II GTNNAC 4 cut(s) 208, 939, 1037, 1089
Hpy188I TCNGA 7 cut(s) 127, 134, 196, 658, 807, 973, 1098
Hpy188III TCNNGA 2 cut(s) 275, 597
Hpy8I GTNNAC 4 cut(s) 208, 939, 1037, 1089
Hpy99I CGWCG 2 cut(s) 131, 134
HpyAV CCTTC 3 cut(s) 896, 1002, 1146
HpyCH4III ACNGT 3 cut(s) 517, 817, 1118
HpyCH4IV ACGT 2 cut(s) 129, 663
HpyCH4V TGCA 4 cut(s) 472, 546, 965, 1133
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 101
HpyF3I CTNAG 7 cut(s) 153, 366, 677, 721, 804, 1095, 1139
HpySE526I ACGT 2 cut(s) 129, 663
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 27, 1127
HspAI GCGC 2 cut(s) 257, 370
Kzo9I GATC 4 cut(s) 313, 352, 864, 1142
LmnI GCTCC 1 cut(s) 162
Lsp1109I GCAGC 2 cut(s) 499, 832
LweI GCATC 5 cut(s) 244, 352, 520, 555, 729
MaeI CTAG 1 cut(s) 834
MaeII ACGT 2 cut(s) 129, 663
MaeIII GTNAC 5 cut(s) 505, 796, 811, 881, 895
MalI GATC 4 cut(s) 315, 354, 866, 1144
MboI GATC 4 cut(s) 313, 352, 864, 1142
MboII GAAGA 2 cut(s) 422, 986
MflI RGATCY 1 cut(s) 1142
MhlI GDGCHC 2 cut(s) 346, 663
MmeI TCCRAC 2 cut(s) 112, 150
Mph1103I ATGCAT 1 cut(s) 548
MroXI GAANNNNTTC 2 cut(s) 562, 1058
MseI TTAA 8 cut(s) 9, 89, 179, 396, 483, 822, 852, 1023
MslI CAYNNNNRTG 2 cut(s) 541, 551
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 4 cut(s) 260, 402, 440, 550
MspR9I CCNGG 3 cut(s) 162, 440, 551
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 92, 101
NciI CCSGG 2 cut(s) 440, 551
NdeII GATC 4 cut(s) 313, 352, 864, 1142
NlaIII CATG 2 cut(s) 27, 1127
NmeAIII GCCGAG 1 cut(s) 894
NmuCI GTSAC 4 cut(s) 505, 796, 881, 895
NsiI ATGCAT 1 cut(s) 548
NspI RCATGY 1 cut(s) 1127
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdmI GAANNNNTTC 2 cut(s) 562, 1058
PfeI GAWTC 4 cut(s) 122, 135, 332, 968
PflMI CCANNNNNTGG 1 cut(s) 925
PkrI GCNGC 3 cut(s) 173, 489, 847
PpuMI RGGWCCY 1 cut(s) 759
PshBI ATTAAT 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 346
Psp5II RGGWCCY 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 160
PspEI GGTNACC 1 cut(s) 811
PspGI CCWGG 1 cut(s) 160
PspPI GGNCC 2 cut(s) 524, 759
PspPPI RGGWCCY 1 cut(s) 759
PstI CTGCAG 1 cut(s) 1135
PstNI CAGNNNCTG 1 cut(s) 971
PsuI RGATCY 1 cut(s) 1142
RsaI GTAC 4 cut(s) 18, 304, 778, 1159
RsaNI GTAC 4 cut(s) 17, 303, 777, 1158
RseI CAYNNNNRTG 2 cut(s) 541, 551
SacI GAGCTC 1 cut(s) 346
SaqAI TTAA 8 cut(s) 9, 89, 179, 396, 483, 822, 852, 1023
SatI GCNGC 3 cut(s) 172, 488, 846
Sau3AI GATC 4 cut(s) 313, 352, 864, 1142
Sau96I GGNCC 2 cut(s) 524, 759
ScrFI CCNGG 3 cut(s) 162, 440, 551
SduI GDGCHC 2 cut(s) 346, 663
SfaNI GCATC 5 cut(s) 244, 352, 520, 555, 729
SfcI CTRYAG 1 cut(s) 1131
SgrAI CRCCGGYG 1 cut(s) 259
SinI GGWCC 2 cut(s) 524, 759
SmiMI CAYNNNNRTG 2 cut(s) 541, 551
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SsiI CCGC 5 cut(s) 74, 171, 773, 993, 1057
SspI AATATT 1 cut(s) 1191
SspMI CTAG 1 cut(s) 834
SstI GAGCTC 1 cut(s) 346
StyD4I CCNGG 3 cut(s) 160, 438, 549
StyI CCWWGG 2 cut(s) 755, 1002
TaaI ACNGT 3 cut(s) 517, 817, 1118
TaiI ACGT 2 cut(s) 132, 666
TaqI TCGA 1 cut(s) 460
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 4 cut(s) 122, 135, 332, 968
Tru1I TTAA 8 cut(s) 9, 89, 179, 396, 483, 822, 852, 1023
Tru9I TTAA 8 cut(s) 9, 89, 179, 396, 483, 822, 852, 1023
TscAI CASTG 2 cut(s) 474, 1140
TseFI GTSAC 4 cut(s) 505, 796, 881, 895
TseI GCWGC 2 cut(s) 487, 845
Tsp45I GTSAC 4 cut(s) 505, 796, 881, 895
TspDTI ATGAA 4 cut(s) 227, 525, 575, 674
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 2 cut(s) 474, 1140
Van91I CCANNNNNTGG 1 cut(s) 925
Vha464I CTTAAG 1 cut(s) 8
VpaK11BI GGWCC 2 cut(s) 524, 759
VspI ATTAAT 1 cut(s) 396
XagI CCTNNNNNAGG 1 cut(s) 1006
XapI RAATTY 4 cut(s) 497, 562, 592, 671
XceI RCATGY 1 cut(s) 1127
XmnI GAANNNNTTC 2 cut(s) 562, 1058
XspI CTAG 1 cut(s) 834
ZraI GACGTC 1 cut(s) 130
Zsp2I ATGCAT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.