Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000164

Orthogroup ID

OG0006222

Physical Location & Seq

Genomic Coordinates Forward (+)

232286 .. 239536

Gene Structure 7251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_164G00436290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2016 bp

ATGTGGCTTAACCCTGTATCGTCGTGCTTCCCGAATCTAAAACCCTACTCCTACTCCCCTGCAACTCCTCCACCACCACCAACCACCACCGTGAAAGCTCTGATGGCCATGAAGACTACGGAGGAATCCGACGTCGGAATATTCTGTTACATCTCTCAGCTCCCTGGCTTTCGCGGCATTCTTAAGCAAAGGTATTCTGATTTTATGGTGAATGAAGTCGATACCGAAGGAAATGTGGTTCATTTGACCAACTTGGAAGCTCCACCAGAGGTAGTGAAGGAAAATGGAGCGAAGACGCAGGATGCTGCAAGTAAAGATTATAGTGCTGAAATCGAAAAGTTTAGGTCTCTTGCTGGTGGTGAGGATGTTGAGCGATTGGAAGCTTTGATCAGCCAGATTAATTCTGGAAGTGAAGATGGTGTTATGCCTATTGTTCTTTCGCCAGACTATGATAAAGCTCATCGAACGGCAGTGCATAATTTTTTTAAGGAGAACTTAAAGTTCCTTGTCACCGATGCAGTGGATGGACCGGATGCTTCGTCAAAATGCATCCGTGTAAGACTAAATTCAGGAGGGCAGAATGGCAGAGGCAGGAATTCGAAAAAGCGAAAAGAAAGGGGTGATAAACCATTTGATAGCAGAGGTACTGATGACTGGTCAGAGCATGTTGCCAAGTTCCTAAGGTTTCATCTTTACAAGGAGAACAAGGATACACAGGAAGCTTTAGGAATTATAGGAAAGATGCTTGGAATACAGCCAAGGGCATTTGGGTTTGCGGGTACAAAGGATAAGCGTGCTGTTTCAAGTCAAAGGCTATGTGAAAGAAGGACTTTCTCTTGGCCAACTCCTGGGAAACCGCTTTACAATTACATTGAGAGGTTTGGAAGTGGTTCAGTTCCAACACACCTTATTGGAGCTTCACTACTGAGAGAGAGTGGAAATCTACTAGATGTGATTACGGAGGCACGGAAGTACTACAAGGAAACTAATGATATTGACGGGACCTTGAGGAAATTACCTCGACATCTTGTTGCTGAAAGAGCTATTCTGCAGTGTCTGAAGAAATGTCCTGGAAACTACTCTCAGGCTCTGAAAGCTATTCCCAGAACTTTGAGGATGATGTATGTACATAGTTACCAGAGCTATTTGTGGAACCATGCAGCAAGTATGAGAGTGCAAAAATATGGAACTGACCGAGTTGTGGTGGGAGACTTGGTATATTGTAAAGGAAATGAAACTGAGAAGGTGACAGGAATTGTTAGTTCTGAGTGTGTGGATGAAAATGTTAATGTTGAAAACTGTGATGATACATTTGATCCTAGTCATTTGGATGACATATCAGAAACAAATATTCCTGAGGCGAGGGTTAATGTTGTAAAGGCTGTAACTGCAGAAGATATCGACAACGGGAATTACACGATTGATGATATTGTCCTTCCTCTGCCAGGATCAAGAGTCATCCTTCCAGAAAATGATATTGCTGCTGTTTTTCATGATCTAGCAAAGAAGGATGCGATCAGCTTGACAGAGAGCGTGCATAATGTCAAGGAATTCTCAATAACGAATGTGACTGGAAGTTACAGGCGGGTCTTCCAAAAACCAATGGACTTTGAATGGGAATTACTTAAGTATATTGATGGCAATATACCATTGGTGGAGACAGACTTTGAAAAAATTGACAAAACCAAGCCTGTGAATGTACACAAAGAGGACCCAACAAGTGTAAATGGAGATGGAAGTTTACATGATAGCATCAAACAGTCAGAGTGCTCTGCCAATGATATAGAACTGCAGAAAAGAGATATTGAGGTGGAAGACAAGGGAGAAAAATTGCCACAAGTTGAATCTCTCGGTGGCACTAATCCTCAGGGGAACTCAGATTGCTCTGAAGTTGAGCTTTACTCTCCCATCATCTTGTTATGCAACAATGGCCATCAGAGAGCTACTGAAGACTTCGACATCTTATGGACATCTACTAGATATGCCTCCTTTCGTGATATGGCTTCAACTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016556 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0040031 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:1901360 GO:1902494 GO:1990481 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TruD

Protein Analysis

671

Amino Acids

74.99

Weight (kDa)

5.5

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TruD	PF01142	224 - 274	4.3e-09	tRNA pseudouridine synthase D (TruD)
TruD	PF01142	292 - 417	5.4e-26	tRNA pseudouridine synthase D (TruD)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04820
fragaria_vesca	FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330
malus_domestica	MD04G1221700.v1.1 MD12G1237800.v1.1
prunus_persica	Prupe.6G340900_v2.0.a1
pyrus_communis	pycom04g19610 pycom04g19630 pycom12g21860 pycom12g21870
rosa_chinensis	RchiOBHm_Chr3g0451831
rosa_laevigata	RLG00000025646
rosa_multiflora	Rmu_sc0006510.1_g000014
rosa_roxburghii	Rroxscaffold_164G00436290 Rroxscaffold_6G00429000
rosa_rugosa	Rorug02G0636600 Rorug02G0636600
rosa_samantha	Rh3AG038100 Rh3BG039300 Rh3CG037800 Rh3DG038600
rosa_wichuraiana	Rw3G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	135
AccB7I	CCANNNNNTGG	1 cut(s)	848
AccII	CGCG	1 cut(s)	174
AciI	CCGC	4 cut(s)	174, 776, 857, 1585
AclWI	GGATC	2 cut(s)	1310, 1456
AcoI	YGGCCR	3 cut(s)	105, 839, 1930
AcsI	RAATTY	3 cut(s)	565, 595, 1550
AcuI	CTGAAG	3 cut(s)	1079, 1908, 1968
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	5 cut(s)	646, 781, 974, 1128, 1701
AfiI	CCNNNNNNNGG	3 cut(s)	848, 1201, 1445
AflII	CTTAAG	2 cut(s)	182, 1625
AgsI	TTSAA	6 cut(s)	804, 1295, 1613, 1670, 1844, 2007
AhlI	ACTAGT	1 cut(s)	2009
AjnI	CCWGG	4 cut(s)	163, 847, 1069, 1444
AleI	CACNNNNGTG	1 cut(s)	89
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
Alw21I	GWGCWC	1 cut(s)	1772
Alw26I	GTCTC	3 cut(s)	351, 1203, 1652
AlwI	GGATC	2 cut(s)	1310, 1456
AlwNI	CAGNNNCTG	2 cut(s)	1057, 1090
AoxI	GGCC	3 cut(s)	105, 839, 1930
ApeKI	GCWGC	3 cut(s)	305, 1160, 1481
ApoI	RAATTY	3 cut(s)	565, 595, 1550
AseI	ATTAAT	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	889
AspS9I	GGNCC	3 cut(s)	527, 1002, 1711
AsuHPI	GGTGA	5 cut(s)	220, 371, 502, 632, 1258
AsuII	TTCGAA	1 cut(s)	599
AvaII	GGWCC	3 cut(s)	527, 1002, 1711
AxyI	CCTNAGG	3 cut(s)	680, 1356, 1866
BalI	TGGCCA	3 cut(s)	107, 841, 1932
BbsI	GAAGAC	5 cut(s)	119, 299, 1582, 1821, 1956
Bbv12I	GWGCWC	1 cut(s)	1772
BbvI	GCAGC	3 cut(s)	292, 1172, 1468
BccI	CCATC	7 cut(s)	97, 410, 518, 1631, 1727, 1916, 1941
BceAI	ACGGC	1 cut(s)	483
BciT130I	CCWGG	4 cut(s)	165, 849, 1071, 1446
BciVI	GTATCC	1 cut(s)	703
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	3 cut(s)	351, 1203, 1652
BcuI	ACTAGT	1 cut(s)	2009
BfaI	CTAG	5 cut(s)	947, 1320, 1499, 1977, 2010
BfmI	CTRYAG	3 cut(s)	1049, 1389, 1790
BfrI	CTTAAG	2 cut(s)	182, 1625
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	4 cut(s)	175, 306, 1161, 1482
BlsI	GCNGC	4 cut(s)	176, 307, 1162, 1483
BmcAI	AGTACT	1 cut(s)	974
Bme1390I	CCNGG	4 cut(s)	165, 849, 1071, 1446
Bme18I	GGWCC	3 cut(s)	527, 1002, 1711
BmgT120I	GGNCC	3 cut(s)	527, 1002, 1711
BmiI	GGNNCC	3 cut(s)	1003, 1154, 1713
BmrFI	CCNGG	4 cut(s)	165, 849, 1071, 1446
BmsI	GCATC	7 cut(s)	292, 505, 523, 558, 732, 1501, 1761
BpiI	GAAGAC	5 cut(s)	119, 299, 1582, 1821, 1956
BplI	GAGNNNNNCTC	2 cut(s)	1886, 1918
Bpu14I	TTCGAA	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	1027
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	163, 758, 848
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 1200, 1230
Bsc4I	CCNNNNNNNGG	3 cut(s)	848, 1201, 1445
Bse1I	ACTGG	2 cut(s)	659, 1576
Bse21I	CCTNAGG	3 cut(s)	680, 1356, 1866
BseBI	CCWGG	4 cut(s)	165, 849, 1071, 1446
BseDI	CCNNGG	3 cut(s)	163, 758, 848
BseLI	CCNNNNNNNGG	3 cut(s)	848, 1201, 1445
BseMII	CTCAG	8 cut(s)	170, 917, 1097, 1230, 1257, 1347, 1880, 1890
BseNI	ACTGG	2 cut(s)	659, 1576
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	3 cut(s)	292, 1172, 1468
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	107, 841, 1932
BsiHKAI	GWGCWC	1 cut(s)	1772
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	1015
BslI	CCNNNNNNNGG	3 cut(s)	848, 1201, 1445
BsmAI	GTCTC	3 cut(s)	351, 1203, 1652
BsmFI	GGGAC	1 cut(s)	1015
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	107, 841, 1932
Bso31I	GGTCTC	1 cut(s)	351
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	1772
Bsp1407I	TGTACA	2 cut(s)	1126, 1699
Bsp143I	GATC	5 cut(s)	387, 1315, 1448, 1495, 1515
BspACI	CCGC	4 cut(s)	174, 776, 857, 1585
BspANI	GGCC	3 cut(s)	107, 841, 1932
BspCNI	CTCAG	8 cut(s)	169, 918, 1096, 1231, 1258, 1348, 1879, 1889
BspFNI	CGCG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	1492
BspLI	GGNNCC	3 cut(s)	1003, 1154, 1713
BspMAI	CTGCAG	3 cut(s)	1053, 1393, 1794
BspPI	GGATC	2 cut(s)	1310, 1456
BspT104I	TTCGAA	1 cut(s)	599
BspTI	CTTAAG	2 cut(s)	182, 1625
BspTNI	GGTCTC	1 cut(s)	351
BsrGI	TGTACA	2 cut(s)	1126, 1699
BsrI	ACTGG	2 cut(s)	659, 1576
BssECI	CCNNGG	3 cut(s)	163, 758, 848
BssMI	GATC	5 cut(s)	387, 1315, 1448, 1495, 1515
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	758
Bst2UI	CCWGG	4 cut(s)	165, 849, 1071, 1446
Bst4CI	ACNGT	3 cut(s)	91, 1301, 1761
BstACI	GRCGYC	1 cut(s)	132
BstAFI	CTTAAG	2 cut(s)	182, 1625
BstAUI	TGTACA	2 cut(s)	1126, 1699
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	2 cut(s)	795, 1535
BstDEI	CTNAG	9 cut(s)	156, 680, 926, 1083, 1239, 1266, 1356, 1866, 1876
BstENI	CCTNNNNNAGG	1 cut(s)	1443
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	5 cut(s)	390, 1318, 1451, 1498, 1518
BstMAI	GTCTC	3 cut(s)	351, 1203, 1652
BstMBI	GATC	5 cut(s)	387, 1315, 1448, 1495, 1515
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 174, 1040, 1094, 1388, 1929
BstNI	CCWGG	4 cut(s)	165, 849, 1071, 1446
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	4 cut(s)	163, 847, 1069, 1444
BstSFI	CTRYAG	3 cut(s)	1049, 1389, 1790
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	292, 1172, 1468
BstV2I	GAAGAC	5 cut(s)	119, 299, 1582, 1821, 1956
Bsu36I	CCTNAGG	3 cut(s)	680, 1356, 1866
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	107, 841, 1932
BtsI	GCAGTG	3 cut(s)	477, 525, 1058
BtsIMutI	CAGTG	3 cut(s)	477, 525, 1058
Cac8I	GCNNGC	2 cut(s)	795, 1535
CaiI	CAGNNNCTG	2 cut(s)	1057, 1090
CciI	TCATGA	1 cut(s)	1492
Cfr13I	GGNCC	3 cut(s)	527, 1002, 1711
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	5 cut(s)	645, 780, 973, 1127, 1700
CviAII	CATG	5 cut(s)	109, 665, 1157, 1493, 1745
CviQI	GTAC	5 cut(s)	645, 780, 973, 1127, 1700
DdeI	CTNAG	9 cut(s)	156, 680, 926, 1083, 1239, 1266, 1356, 1866, 1876
DpnI	GATC	5 cut(s)	389, 1317, 1450, 1497, 1517
DpnII	GATC	5 cut(s)	387, 1315, 1448, 1495, 1515
EaeI	YGGCCR	3 cut(s)	105, 839, 1930
Eco130I	CCWWGG	1 cut(s)	758
Eco31I	GGTCTC	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	1399
Eco47I	GGWCC	3 cut(s)	527, 1002, 1711
Eco57I	CTGAAG	3 cut(s)	1079, 1908, 1968
Eco81I	CCTNAGG	3 cut(s)	680, 1356, 1866
EcoNI	CCTNNNNNAGG	1 cut(s)	1443
EcoO109I	RGGNCCY	2 cut(s)	1002, 1711
EcoRI	GAATTC	2 cut(s)	595, 1550
EcoRII	CCWGG	4 cut(s)	163, 847, 1069, 1444
EcoRV	GATATC	1 cut(s)	1399
EcoT14I	CCWWGG	1 cut(s)	758
EcoT22I	ATGCAT	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	5 cut(s)	112, 668, 1160, 1496, 1748
FalI	AAGNNNNNCTT	6 cut(s)	479, 511, 814, 846, 1881, 1913
FaqI	GGGAC	1 cut(s)	1015
FatI	CATG	5 cut(s)	108, 664, 1156, 1492, 1744
FauI	CCCGC	2 cut(s)	769, 1578
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	175, 306, 1161, 1482
Fsp4HI	GCNGC	4 cut(s)	175, 306, 1161, 1482
FspBI	CTAG	5 cut(s)	947, 1320, 1499, 1977, 2010
GluI	GCNGC	4 cut(s)	175, 306, 1161, 1482
HaeIII	GGCC	3 cut(s)	107, 841, 1932
HapII	CCGG	1 cut(s)	530
HgaI	GACGC	1 cut(s)	304
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	5 cut(s)	112, 668, 1160, 1496, 1748
HindIII	AAGCTT	2 cut(s)	381, 720
HinfI	GANTC	4 cut(s)	34, 125, 1455, 1844
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	5 cut(s)	220, 371, 502, 632, 1258
Hpy166II	GTNNAC	2 cut(s)	1702, 1742
Hpy188III	TCNNGA	8 cut(s)	31, 405, 570, 1355, 1452, 1466, 1493, 1994
Hpy8I	GTNNAC	2 cut(s)	1702, 1742
Hpy99I	CGWCG	3 cut(s)	25, 134, 137
HpyAV	CCTTC	7 cut(s)	221, 271, 819, 1237, 1445, 1472, 1501
HpyCH4III	ACNGT	3 cut(s)	91, 1301, 1761
HpyCH4IV	ACGT	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 174, 1040, 1094, 1388, 1929
HpyF3I	CTNAG	9 cut(s)	156, 680, 926, 1083, 1239, 1266, 1356, 1866, 1876
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	5 cut(s)	112, 668, 1160, 1496, 1748
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	5 cut(s)	387, 1315, 1448, 1495, 1515
LmnI	GCTCC	4 cut(s)	165, 265, 287, 914
Lsp1109I	GCAGC	3 cut(s)	292, 1172, 1468
LweI	GCATC	7 cut(s)	292, 505, 523, 558, 732, 1501, 1761
MaeI	CTAG	5 cut(s)	947, 1320, 1499, 1977, 2010
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	7 cut(s)	146, 508, 1133, 1246, 1384, 1567, 1577
MalI	GATC	5 cut(s)	389, 1317, 1450, 1497, 1517
MboI	GATC	5 cut(s)	387, 1315, 1448, 1495, 1515
MboII	GAAGA	8 cut(s)	124, 304, 425, 1072, 1406, 1582, 1826, 1961
MhlI	GDGCHC	1 cut(s)	1772
MlsI	TGGCCA	3 cut(s)	107, 841, 1932
MluNI	TGGCCA	3 cut(s)	107, 841, 1932
MlyI	GAGTC	1 cut(s)	1464
MmeI	TCCRAC	3 cut(s)	115, 153, 923
Mox20I	TGGCCA	3 cut(s)	107, 841, 1932
Mph1103I	ATGCAT	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	889
MscI	TGGCCA	3 cut(s)	107, 841, 1932
MseI	TTAA	8 cut(s)	9, 183, 399, 486, 497, 1287, 1368, 1626
MslI	CAYNNNNRTG	2 cut(s)	89, 1329
Msp20I	TGGCCA	3 cut(s)	107, 841, 1932
MspCI	CTTAAG	2 cut(s)	182, 1625
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	4 cut(s)	165, 849, 1071, 1446
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	4 cut(s)	165, 849, 1071, 1446
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	6 cut(s)	104, 174, 1040, 1094, 1388, 1929
NdeII	GATC	5 cut(s)	387, 1315, 1448, 1495, 1515
NlaIII	CATG	5 cut(s)	112, 668, 1160, 1496, 1748
NlaIV	GGNNCC	3 cut(s)	1003, 1154, 1713
NmuCI	GTSAC	3 cut(s)	508, 1246, 1567
NsiI	ATGCAT	1 cut(s)	551
NspI	RCATGY	1 cut(s)	668
NspV	TTCGAA	1 cut(s)	599
OliI	CACNNNNGTG	1 cut(s)	89
PagI	TCATGA	1 cut(s)	1492
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PctI	GAATGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	889
PfeI	GAWTC	3 cut(s)	34, 125, 1844
PflMI	CCANNNNNTGG	1 cut(s)	848
PfoI	TCCNGGA	1 cut(s)	1069
PkrI	GCNGC	4 cut(s)	176, 307, 1162, 1483
PleI	GAGTC	1 cut(s)	1463
PpsI	GAGTC	1 cut(s)	1463
PpuMI	RGGWCCY	2 cut(s)	1002, 1711
PshBI	ATTAAT	1 cut(s)	399
Psp5II	RGGWCCY	2 cut(s)	1002, 1711
Psp6I	CCWGG	4 cut(s)	163, 847, 1069, 1444
PspGI	CCWGG	4 cut(s)	163, 847, 1069, 1444
PspN4I	GGNNCC	3 cut(s)	1003, 1154, 1713
PspPI	GGNCC	3 cut(s)	527, 1002, 1711
PspPPI	RGGWCCY	2 cut(s)	1002, 1711
PstI	CTGCAG	3 cut(s)	1053, 1393, 1794
PstNI	CAGNNNCTG	2 cut(s)	1057, 1090
RsaI	GTAC	5 cut(s)	646, 781, 974, 1128, 1701
RsaNI	GTAC	5 cut(s)	645, 780, 973, 1127, 1700
RseI	CAYNNNNRTG	2 cut(s)	89, 1329
SaqAI	TTAA	8 cut(s)	9, 183, 399, 486, 497, 1287, 1368, 1626
SatI	GCNGC	4 cut(s)	175, 306, 1161, 1482
Sau3AI	GATC	5 cut(s)	387, 1315, 1448, 1495, 1515
Sau96I	GGNCC	3 cut(s)	527, 1002, 1711
ScaI	AGTACT	1 cut(s)	974
SchI	GAGTC	1 cut(s)	1464
ScrFI	CCNGG	4 cut(s)	165, 849, 1071, 1446
SduI	GDGCHC	1 cut(s)	1772
SfaNI	GCATC	7 cut(s)	292, 505, 523, 558, 732, 1501, 1761
SfcI	CTRYAG	3 cut(s)	1049, 1389, 1790
SfuI	TTCGAA	1 cut(s)	599
SinI	GGWCC	3 cut(s)	527, 1002, 1711
SmiMI	CAYNNNNRTG	2 cut(s)	89, 1329
SmlI	CTYRAG	3 cut(s)	182, 1006, 1625
SmoI	CTYRAG	3 cut(s)	182, 1006, 1625
SpeI	ACTAGT	1 cut(s)	2009
SsiI	CCGC	4 cut(s)	174, 776, 857, 1585
SspI	AATATT	2 cut(s)	141, 1351
SspMI	CTAG	5 cut(s)	947, 1320, 1499, 1977, 2010
StyD4I	CCNGG	4 cut(s)	163, 847, 1069, 1444
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	3 cut(s)	91, 1301, 1761
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	7 cut(s)	219, 333, 463, 599, 1021, 1401, 1956
TaqII	GACCGA	1 cut(s)	1209
TatI	WGTACW	3 cut(s)	972, 1126, 1699
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	3 cut(s)	34, 125, 1844
Tru1I	TTAA	8 cut(s)	9, 183, 399, 486, 497, 1287, 1368, 1626
Tru9I	TTAA	8 cut(s)	9, 183, 399, 486, 497, 1287, 1368, 1626
TscAI	CASTG	3 cut(s)	477, 525, 1058
TseFI	GTSAC	3 cut(s)	508, 1246, 1567
TseI	GCWGC	3 cut(s)	305, 1160, 1481
Tsp45I	GTSAC	3 cut(s)	508, 1246, 1567
TspDTI	ATGAA	7 cut(s)	125, 228, 230, 677, 1248, 1293, 1481
TspGWI	ACGGA	4 cut(s)	134, 542, 974, 982
TspRI	CASTG	3 cut(s)	477, 525, 1058
Van91I	CCANNNNNTGG	1 cut(s)	848
Vha464I	CTTAAG	2 cut(s)	182, 1625
VpaK11BI	GGWCC	3 cut(s)	527, 1002, 1711
VspI	ATTAAT	1 cut(s)	399
XagI	CCTNNNNNAGG	1 cut(s)	1443
XapI	RAATTY	3 cut(s)	565, 595, 1550
XceI	RCATGY	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	889
XspI	CTAG	5 cut(s)	947, 1320, 1499, 1977, 2010
ZraI	GACGTC	1 cut(s)	133
ZrmI	AGTACT	1 cut(s)	974
Zsp2I	ATGCAT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.