Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006222

Physical Location & Seq

Genomic Coordinates Reverse (-)

2747413 .. 2755604

Gene Structure 8192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41905

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGTGGCTTAACCCTGTATCGTCGTGCTTCCCGAATCTAAAACCCTACTCCTACTCCCCTGCAACTCCTCCACCACCACCAACCACCACCGTGAAAGCTCTGATGGCCATGAAGACTACGGAGGAATCCGACGTCGGAATATTCTGTTACATCTCTCAGCTCCCTGGCTTTCGCGGCATTCTTAAGCAAAGGTATTCTGATTTTATGGTGAATGAAGTCGATACCGAAGGAAATGTGGTTCATTTGACCAACTTGGAAGCTCCACCAGAGGTAGTGAAGGAAAATGGAGCGAAGATGCAGGATAGTGCAAGTAAAGATTATAGTGCTGAAATCAAAAAGTTTAGGTCTCTTGCTGGTGGTGAGGATGTTGAGCGATTGGAAGCTTTGATCAGCCAGATTAATTCTGGAAGTGAAGATGGTGTTATGCCTATTGTTCTTTTGCCAGACTATGATAAAGCTCATCGAACGGCAGTGCATAATTTTTTTAAGGAGAACTTAAAGTTCCTTGTCACCGATGCAGTGGATGGACCGGATGCTTCGTCAAAATGCATCCGTGTAAGACTAAATTCAGGAGGGCAGAATGGCAGAGGCAGGAATTCGAAAAAGCGAAAAGAAAGGGGTGATAAACCATTTGATAGCAGAGGTACTGATGACTGGTCAGAGCATGTTGCCAAGTTCCTAAGGTTTCATCTTTACAAGGAGAACAAGGATACACAGGAAGCTTTAGGAATTATAGGAAAGATGCTTGGAATACAGCCAAGGGCATTTGGGTTTGCGGGTACAAAGGATAAGCGTGCTGTTTCAAGTCAAAGGGTAACCGTCTTTAAGCAGTTTGCAAGTAGATTAGCTGCTCTTAATGATAGGTTGATTGGTATCAAAGTAGGCGACTTTTGCTATGTGAAAGAAGGACTTTCTCTTGGCCAACTCCTGGGGAACCGCTTTACAATTACATTGAGAGGAGTTGTTGCAGATTCTGAAGATACGATCCACGCATCTGCAAATGCCTTAGGAAAACAGGGATTTGTTAACTACTTTGGTTTACAAAGGTTTGGAAGTGGTTCAGTTCCAACACACCTTATTGGAGCTTCACTACTGAGAGGAGAGTGGAAATCTACTGTAAGCATGATGCTTGAACCGAGAGAAGGGGATATCCTTTACTGTTTAGATGTGATTACGGAAGCACGGAAGTACTACAAGGAAACTAATGATATTGACGGGACCTTGAGGAAATTACCTCGACATCTTGTTGCTGAAAGAGCTATTCTGCAGTGTCTGAAGAAATGTCCTGGAAACTACTCTCAGGCTCTGAAAGCTATTCCCAGAACTTTGAGGATGATGTATGTACATAGTTACCAGAGCTATTTGTGGAACCATGCAGCAAGTATGAGAGTGCAAAAATATGGAACTGACCGAGTTGTGGTGGGAGACTTGGTATATTGTAAAGGAAATGAAACTGAGAAGGTGACAGGAATTGTTAGTTCTGAGTGTGTGGATGAAAATGTTAATGATGAAAACTGTGATGATACATTTGATCCTAGTCATTTGGATGACGTATCAGAAACAAATATTCCTGAGGCGAGGGTTAATCTTGTAAAGGCTGTAACTGCAGAAGATATCGACAATGGGAATTACACGATTGATGATATTGTCCTTCCTCTGCCAGGATCGAGGGTCATCTTTCCAGAAAATGATATAGCTGCTGTTTTTCATGATCTAGCAAAGAAGGATGCGATCAGCTTGACAGAGAGCGTGCATAATGTCAAGGAATTCTCAATAACGAATGTGACTGGAAGTTACAGGCGGGTCTTCCAAAAACCAATGGACTTTGAATGGGAATTACTAAAGTATATTGATGGCAATATACCATTGGTGGAGACAGACTTTGAAAAAATTGACAAAACCAAGCCTGTGAATGTACACAAAGAGGACCCAACAAGTGTAAATGGAGATGGAAGTTTACATGATAGCATCAAACAGTCAGAGTGCTCTGCCAATGATATAGAACTGCAGAAAAGAGGTATTGAGGTGGAAGACAAGGGAGAAAAGTTGCCACAAGTTGAATCTCTCGGTGGCACTAATCCTCAGGGAACTCAGATTGCTCTGAAGTTGAGCTTTACTCTCCCATCATCTTGTTATGCAACAATGGCCATCAGAGAGCTTCTGAAGACTTCGACATCCGTTGCTTTTCACAAAACCTTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016556 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0040031 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:1901360 GO:1902494 GO:1990481 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TruD

Protein Analysis

734

Amino Acids

81.57

Weight (kDa)

6.12

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TruD	PF01142	224 - 489	1.4e-66	tRNA pseudouridine synthase D (TruD)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04820
fragaria_vesca	FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330
malus_domestica	MD04G1221700.v1.1 MD12G1237800.v1.1
prunus_persica	Prupe.6G340900_v2.0.a1
pyrus_communis	pycom04g19610 pycom04g19630 pycom12g21860 pycom12g21870
rosa_chinensis	RchiOBHm_Chr3g0451831
rosa_laevigata	RLG00000025646
rosa_multiflora	Rmu_sc0006510.1_g000014
rosa_roxburghii	Rroxscaffold_164G00436290 Rroxscaffold_6G00429000
rosa_rugosa	Rorug02G0636600 Rorug02G0636600
rosa_samantha	Rh3AG038100 Rh3BG039300 Rh3CG037800 Rh3DG038600
rosa_wichuraiana	Rw3G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	135
AccB7I	CCANNNNNTGG	1 cut(s)	928
AccII	CGCG	1 cut(s)	174
AciI	CCGC	4 cut(s)	174, 776, 937, 1801
AclWI	GGATC	3 cut(s)	979, 1526, 1672
AcoI	YGGCCR	3 cut(s)	105, 919, 2145
AcsI	RAATTY	3 cut(s)	565, 595, 1766
AcuI	CTGAAG	4 cut(s)	996, 1295, 2123, 2183
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	5 cut(s)	646, 781, 1190, 1344, 1917
AfiI	CCNNNNNNNGG	4 cut(s)	928, 1142, 1417, 1661
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	6 cut(s)	804, 1133, 1829, 1886, 2060, 2200
AjnI	CCWGG	4 cut(s)	163, 927, 1285, 1660
AleI	CACNNNNGTG	1 cut(s)	89
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
Alw21I	GWGCWC	1 cut(s)	1988
Alw26I	GTCTC	3 cut(s)	351, 1419, 1868
AlwI	GGATC	3 cut(s)	979, 1526, 1672
AlwNI	CAGNNNCTG	3 cut(s)	974, 1273, 1306
AoxI	GGCC	3 cut(s)	105, 919, 2145
ApeKI	GCWGC	3 cut(s)	848, 1376, 1697
ApoI	RAATTY	3 cut(s)	565, 595, 1766
AseI	ATTAAT	1 cut(s)	399
Asp700I	GAANNNNTTC	1 cut(s)	1057
AspS9I	GGNCC	3 cut(s)	527, 1218, 1927
AsuHPI	GGTGA	5 cut(s)	220, 371, 502, 632, 1474
AsuII	TTCGAA	1 cut(s)	599
AvaII	GGWCC	3 cut(s)	527, 1218, 1927
AxyI	CCTNAGG	4 cut(s)	680, 1006, 1572, 2082
BalI	TGGCCA	3 cut(s)	107, 921, 2147
BbsI	GAAGAC	4 cut(s)	119, 1798, 2037, 2171
Bbv12I	GWGCWC	1 cut(s)	1988
BbvI	GCAGC	3 cut(s)	835, 1388, 1684
BccI	CCATC	7 cut(s)	97, 410, 518, 1847, 1943, 2131, 2156
BceAI	ACGGC	1 cut(s)	483
BciT130I	CCWGG	4 cut(s)	165, 929, 1287, 1662
BciVI	GTATCC	1 cut(s)	703
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	3 cut(s)	351, 1419, 1868
BfaI	CTAG	3 cut(s)	1536, 1715, 2203
BfmI	CTRYAG	3 cut(s)	1265, 1605, 2006
BfrI	CTTAAG	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	4 cut(s)	175, 849, 1377, 1698
BlsI	GCNGC	4 cut(s)	176, 850, 1378, 1699
BmcAI	AGTACT	1 cut(s)	1190
Bme1390I	CCNGG	4 cut(s)	165, 929, 1287, 1662
Bme18I	GGWCC	3 cut(s)	527, 1218, 1927
BmgT120I	GGNCC	3 cut(s)	527, 1218, 1927
BmiI	GGNNCC	4 cut(s)	935, 1219, 1370, 1929
BmrFI	CCNGG	4 cut(s)	165, 929, 1287, 1662
BmsI	GCATC	9 cut(s)	285, 505, 523, 558, 732, 1001, 1116, 1717, 1977
BpiI	GAAGAC	4 cut(s)	119, 1798, 2037, 2171
BplI	GAGNNNNNCTC	2 cut(s)	2101, 2133
Bpu14I	TTCGAA	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	1243
BsaBI	GATNNNNATC	1 cut(s)	872
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	163, 758, 928
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 1416, 1446
Bsc4I	CCNNNNNNNGG	4 cut(s)	928, 1142, 1417, 1661
Bse1I	ACTGG	2 cut(s)	659, 1792
Bse21I	CCTNAGG	4 cut(s)	680, 1006, 1572, 2082
Bse8I	GATNNNNATC	1 cut(s)	872
BseBI	CCWGG	4 cut(s)	165, 929, 1287, 1662
BseDI	CCNNGG	3 cut(s)	163, 758, 928
BseGI	GGATG	9 cut(s)	370, 529, 538, 549, 1338, 1498, 1552, 1732, 2174
BseJI	GATNNNNATC	1 cut(s)	872
BseLI	CCNNNNNNNGG	4 cut(s)	928, 1142, 1417, 1661
BseMII	CTCAG	8 cut(s)	170, 1085, 1313, 1446, 1473, 1563, 2096, 2105
BseNI	ACTGG	2 cut(s)	659, 1792
BseRI	GAGGAG	3 cut(s)	57, 972, 1113
BseXI	GCAGC	3 cut(s)	835, 1388, 1684
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	107, 921, 2147
BsiHKAI	GWGCWC	1 cut(s)	1988
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	1231
BslI	CCNNNNNNNGG	4 cut(s)	928, 1142, 1417, 1661
BsmAI	GTCTC	3 cut(s)	351, 1419, 1868
BsmFI	GGGAC	1 cut(s)	1231
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	107, 921, 2147
Bso31I	GGTCTC	1 cut(s)	351
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	1988
Bsp1407I	TGTACA	2 cut(s)	1342, 1915
Bsp143I	GATC	6 cut(s)	387, 984, 1531, 1664, 1711, 1731
BspACI	CCGC	4 cut(s)	174, 776, 937, 1801
BspANI	GGCC	3 cut(s)	107, 921, 2147
BspCNI	CTCAG	8 cut(s)	169, 1086, 1312, 1447, 1474, 1564, 2095, 2104
BspFNI	CGCG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	1708
BspLI	GGNNCC	4 cut(s)	935, 1219, 1370, 1929
BspMAI	CTGCAG	3 cut(s)	1269, 1609, 2010
BspPI	GGATC	3 cut(s)	979, 1526, 1672
BspT104I	TTCGAA	1 cut(s)	599
BspTI	CTTAAG	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	351
BsrGI	TGTACA	2 cut(s)	1342, 1915
BsrI	ACTGG	2 cut(s)	659, 1792
BssECI	CCNNGG	3 cut(s)	163, 758, 928
BssMI	GATC	6 cut(s)	387, 984, 1531, 1664, 1711, 1731
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	758
Bst2UI	CCWGG	4 cut(s)	165, 929, 1287, 1662
Bst4CI	ACNGT	6 cut(s)	91, 820, 1117, 1160, 1517, 1977
BstACI	GRCGYC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	182
BstAUI	TGTACA	2 cut(s)	1342, 1915
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	2 cut(s)	795, 1751
BstEII	GGTNACC	1 cut(s)	814
BstENI	CCTNNNNNAGG	1 cut(s)	1659
BstF5I	GGATG	9 cut(s)	370, 529, 538, 549, 1338, 1498, 1552, 1732, 2174
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	6 cut(s)	390, 987, 1534, 1667, 1714, 1734
BstMAI	GTCTC	3 cut(s)	351, 1419, 1868
BstMBI	GATC	6 cut(s)	387, 984, 1531, 1664, 1711, 1731
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 174, 891, 1256, 1310, 1604, 2144
BstNI	CCWGG	4 cut(s)	165, 929, 1287, 1662
BstNSI	RCATGY	1 cut(s)	668
BstPI	GGTNACC	1 cut(s)	814
BstSCI	CCNGG	4 cut(s)	163, 927, 1285, 1660
BstSFI	CTRYAG	3 cut(s)	1265, 1605, 2006
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	835, 1388, 1684
BstV2I	GAAGAC	4 cut(s)	119, 1798, 2037, 2171
Bsu36I	CCTNAGG	4 cut(s)	680, 1006, 1572, 2082
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	107, 921, 2147
BtsCI	GGATG	9 cut(s)	370, 529, 538, 549, 1338, 1498, 1552, 1732, 2174
BtsI	GCAGTG	3 cut(s)	477, 525, 1274
BtsIMutI	CAGTG	3 cut(s)	477, 525, 1274
Cac8I	GCNNGC	2 cut(s)	795, 1751
CaiI	CAGNNNCTG	3 cut(s)	974, 1273, 1306
CciI	TCATGA	1 cut(s)	1708
Cfr13I	GGNCC	3 cut(s)	527, 1218, 1927
Csp6I	GTAC	5 cut(s)	645, 780, 1189, 1343, 1916
CviAII	CATG	6 cut(s)	109, 665, 1123, 1373, 1709, 1961
CviQI	GTAC	5 cut(s)	645, 780, 1189, 1343, 1916
DpnI	GATC	6 cut(s)	389, 986, 1533, 1666, 1713, 1733
DpnII	GATC	6 cut(s)	387, 984, 1531, 1664, 1711, 1731
EaeI	YGGCCR	3 cut(s)	105, 919, 2145
Eco130I	CCWWGG	1 cut(s)	758
Eco31I	GGTCTC	1 cut(s)	351
Eco32I	GATATC	2 cut(s)	1150, 1615
Eco47I	GGWCC	3 cut(s)	527, 1218, 1927
Eco57I	CTGAAG	4 cut(s)	996, 1295, 2123, 2183
Eco81I	CCTNAGG	4 cut(s)	680, 1006, 1572, 2082
Eco91I	GGTNACC	1 cut(s)	814
EcoNI	CCTNNNNNAGG	1 cut(s)	1659
EcoO109I	RGGNCCY	2 cut(s)	1218, 1927
EcoO65I	GGTNACC	1 cut(s)	814
EcoRI	GAATTC	2 cut(s)	595, 1766
EcoRII	CCWGG	4 cut(s)	163, 927, 1285, 1660
EcoRV	GATATC	2 cut(s)	1150, 1615
EcoT14I	CCWWGG	1 cut(s)	758
EcoT22I	ATGCAT	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	6 cut(s)	112, 668, 1126, 1376, 1712, 1964
FalI	AAGNNNNNCTT	6 cut(s)	479, 511, 894, 926, 2096, 2128
FaqI	GGGAC	1 cut(s)	1231
FatI	CATG	6 cut(s)	108, 664, 1122, 1372, 1708, 1960
FauI	CCCGC	2 cut(s)	769, 1794
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	175, 849, 1377, 1698
FokI	GGATG	9 cut(s)	377, 536, 536, 545, 1345, 1505, 1559, 1739, 2161
Fsp4HI	GCNGC	4 cut(s)	175, 849, 1377, 1698
FspBI	CTAG	3 cut(s)	1536, 1715, 2203
GluI	GCNGC	4 cut(s)	175, 849, 1377, 1698
HaeIII	GGCC	3 cut(s)	107, 921, 2147
HapII	CCGG	1 cut(s)	530
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	6 cut(s)	112, 668, 1126, 1376, 1712, 1964
HincII	GTYRAC	1 cut(s)	1027
HindII	GTYRAC	1 cut(s)	1027
HindIII	AAGCTT	2 cut(s)	381, 720
HinfI	GANTC	4 cut(s)	34, 125, 971, 2060
HpaI	GTTAAC	1 cut(s)	1027
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	5 cut(s)	220, 371, 502, 632, 1474
Hpy166II	GTNNAC	4 cut(s)	1027, 1040, 1918, 1958
Hpy188III	TCNNGA	6 cut(s)	31, 405, 570, 1571, 1682, 1709
Hpy8I	GTNNAC	4 cut(s)	1027, 1040, 1918, 1958
Hpy99I	CGWCG	3 cut(s)	25, 134, 137
HpyAV	CCTTC	7 cut(s)	221, 271, 899, 1136, 1453, 1661, 1717
HpyCH4III	ACNGT	6 cut(s)	91, 820, 1117, 1160, 1517, 1977
HpyCH4IV	ACGT	2 cut(s)	132, 1551
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 174, 891, 1256, 1310, 1604, 2144
HpySE526I	ACGT	2 cut(s)	132, 1551
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	6 cut(s)	112, 668, 1126, 1376, 1712, 1964
Ksp22I	TGATCA	1 cut(s)	387
KspAI	GTTAAC	1 cut(s)	1027
Kzo9I	GATC	6 cut(s)	387, 984, 1531, 1664, 1711, 1731
LmnI	GCTCC	4 cut(s)	165, 265, 287, 1082
Lsp1109I	GCAGC	3 cut(s)	835, 1388, 1684
LweI	GCATC	9 cut(s)	285, 505, 523, 558, 732, 1001, 1116, 1717, 1977
MaeI	CTAG	3 cut(s)	1536, 1715, 2203
MaeII	ACGT	2 cut(s)	132, 1551
MaeIII	GTNAC	8 cut(s)	146, 508, 814, 1349, 1462, 1600, 1783, 1793
MalI	GATC	6 cut(s)	389, 986, 1533, 1666, 1713, 1733
MboI	GATC	6 cut(s)	387, 984, 1531, 1664, 1711, 1731
MboII	GAAGA	9 cut(s)	124, 304, 425, 989, 1288, 1622, 1798, 2042, 2176
MhlI	GDGCHC	1 cut(s)	1988
MlsI	TGGCCA	3 cut(s)	107, 921, 2147
MluNI	TGGCCA	3 cut(s)	107, 921, 2147
MmeI	TCCRAC	3 cut(s)	115, 153, 1091
Mox20I	TGGCCA	3 cut(s)	107, 921, 2147
Mph1103I	ATGCAT	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	1057
MscI	TGGCCA	3 cut(s)	107, 921, 2147
MslI	CAYNNNNRTG	2 cut(s)	89, 1545
Msp20I	TGGCCA	3 cut(s)	107, 921, 2147
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	4 cut(s)	165, 929, 1287, 1662
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	4 cut(s)	165, 929, 1287, 1662
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	7 cut(s)	104, 174, 891, 1256, 1310, 1604, 2144
NdeII	GATC	6 cut(s)	387, 984, 1531, 1664, 1711, 1731
NlaIII	CATG	6 cut(s)	112, 668, 1126, 1376, 1712, 1964
NlaIV	GGNNCC	4 cut(s)	935, 1219, 1370, 1929
NmuCI	GTSAC	3 cut(s)	508, 1462, 1783
NsiI	ATGCAT	1 cut(s)	551
NspI	RCATGY	1 cut(s)	668
NspV	TTCGAA	1 cut(s)	599
OliI	CACNNNNGTG	1 cut(s)	89
PagI	TCATGA	1 cut(s)	1708
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PctI	GAATGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	1057
PfeI	GAWTC	4 cut(s)	34, 125, 971, 2060
PflMI	CCANNNNNTGG	1 cut(s)	928
PfoI	TCCNGGA	1 cut(s)	1285
PkrI	GCNGC	4 cut(s)	176, 850, 1378, 1699
PpuMI	RGGWCCY	2 cut(s)	1218, 1927
PshBI	ATTAAT	1 cut(s)	399
Psp5II	RGGWCCY	2 cut(s)	1218, 1927
Psp6I	CCWGG	4 cut(s)	163, 927, 1285, 1660
PspEI	GGTNACC	1 cut(s)	814
PspGI	CCWGG	4 cut(s)	163, 927, 1285, 1660
PspN4I	GGNNCC	4 cut(s)	935, 1219, 1370, 1929
PspPI	GGNCC	3 cut(s)	527, 1218, 1927
PspPPI	RGGWCCY	2 cut(s)	1218, 1927
PstI	CTGCAG	3 cut(s)	1269, 1609, 2010
PstNI	CAGNNNCTG	3 cut(s)	974, 1273, 1306
RsaI	GTAC	5 cut(s)	646, 781, 1190, 1344, 1917
RsaNI	GTAC	5 cut(s)	645, 780, 1189, 1343, 1916
RseI	CAYNNNNRTG	2 cut(s)	89, 1545
SatI	GCNGC	4 cut(s)	175, 849, 1377, 1698
Sau3AI	GATC	6 cut(s)	387, 984, 1531, 1664, 1711, 1731
Sau96I	GGNCC	3 cut(s)	527, 1218, 1927
ScaI	AGTACT	1 cut(s)	1190
ScrFI	CCNGG	4 cut(s)	165, 929, 1287, 1662
SduI	GDGCHC	1 cut(s)	1988
SfaNI	GCATC	9 cut(s)	285, 505, 523, 558, 732, 1001, 1116, 1717, 1977
SfcI	CTRYAG	3 cut(s)	1265, 1605, 2006
SfuI	TTCGAA	1 cut(s)	599
SinI	GGWCC	3 cut(s)	527, 1218, 1927
SmiMI	CAYNNNNRTG	2 cut(s)	89, 1545
SmlI	CTYRAG	2 cut(s)	182, 1222
SmoI	CTYRAG	2 cut(s)	182, 1222
SsiI	CCGC	4 cut(s)	174, 776, 937, 1801
SspI	AATATT	2 cut(s)	141, 1567
SspMI	CTAG	3 cut(s)	1536, 1715, 2203
StyD4I	CCNGG	4 cut(s)	163, 927, 1285, 1660
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	6 cut(s)	91, 820, 1117, 1160, 1517, 1977
TaiI	ACGT	2 cut(s)	135, 1554
TaqI	TCGA	7 cut(s)	219, 463, 599, 1237, 1617, 1667, 2171
TaqII	GACCGA	1 cut(s)	1425
TatI	WGTACW	3 cut(s)	1188, 1342, 1915
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	4 cut(s)	34, 125, 971, 2060
TscAI	CASTG	3 cut(s)	477, 525, 1274
TseFI	GTSAC	3 cut(s)	508, 1462, 1783
TseI	GCWGC	3 cut(s)	848, 1376, 1697
Tsp45I	GTSAC	3 cut(s)	508, 1462, 1783
TspDTI	ATGAA	8 cut(s)	125, 228, 230, 677, 1464, 1509, 1524, 1697
TspGWI	ACGGA	5 cut(s)	134, 542, 1190, 1198, 2167
TspRI	CASTG	3 cut(s)	477, 525, 1274
Van91I	CCANNNNNTGG	1 cut(s)	928
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	3 cut(s)	527, 1218, 1927
VspI	ATTAAT	1 cut(s)	399
XagI	CCTNNNNNAGG	1 cut(s)	1659
XapI	RAATTY	3 cut(s)	565, 595, 1766
XceI	RCATGY	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	1057
XspI	CTAG	3 cut(s)	1536, 1715, 2203
ZraI	GACGTC	1 cut(s)	133
ZrmI	AGTACT	1 cut(s)	1190
Zsp2I	ATGCAT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.