Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006222

Physical Location & Seq

Genomic Coordinates Forward (+)

21297771 .. 21299410

Gene Structure 1640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19630.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGAGTGAAGAAATATGGAACTGACCGAGTTGTGTTGGGAGACTTGGTATTTTGTAAAGGAAATGAAACTGAAAAGGTGACCGAAGTTGTTACTTCTGAGTGCATAGATGAAAACAGTGATGATATGCTTGATCCTAATGATTTAGGTGATATAGCTGAAACAAATCTTCCTGAGGAAAAGCTTAATCTTGTGAAGGCTGTAACTGCAGAAGATATCCAGAGTGGAAATTATACAATTGAGGATGTTGTCCTTCCTATGCCCGGTTCAAGGGTCATTTTTCCAGAAAATGATATCGCTGATGTCTTTCATGATTTGGCAAAGAAGGATGCAATCAGCTTGACAGAGAGCGTACATAATGTCAAGGAATTCTCAATAACAAGTGTGACAGGAAATTATAGGCGGGTCTTCCAAAAACCAATGGACTTTGAATGGGAAATACTAAAATATGTTGATGGTAATGTACCTTTGGTGGATACCGACTTGGACAAAATTTCCAAAGCGAAACCTGCTAAGGTAGACAAAGAGGATCCATCCAGTGTAAATGGAGATGGAAGTTTGAATGACAGCGCAAAACAGTCAGAGTACATTGACAACGATATTGGGGACAAGGGAGAAAAGGTGCTGGAAGTTGGATCGCTCAGCGCCACTAATCCTCAGGAAACTCAGATGGCTCTCAAGTTGAGCTTTACTCTCCCAGCTTCCTGTTATGCAACAATGGCAATCCGAGAGCTTCTGAAGACATCGACATCTGTTGCGTTTCACAAAACGCTAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016556 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0040031 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:1901360 GO:1902494 GO:1990481 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TruD

Protein Analysis

260

Amino Acids

28.56

Weight (kDa)

4.53

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04820
fragaria_vesca	FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330 FvH4_6g03330
malus_domestica	MD04G1221700.v1.1 MD12G1237800.v1.1
prunus_persica	Prupe.6G340900_v2.0.a1
pyrus_communis	pycom04g19610 pycom04g19630 pycom12g21860 pycom12g21870
rosa_chinensis	RchiOBHm_Chr3g0451831
rosa_laevigata	RLG00000025646
rosa_multiflora	Rmu_sc0006510.1_g000014
rosa_roxburghii	Rroxscaffold_164G00436290 Rroxscaffold_6G00429000
rosa_rugosa	Rorug02G0636600 Rorug02G0636600
rosa_samantha	Rh3AG038100 Rh3BG039300 Rh3CG037800 Rh3DG038600
rosa_wichuraiana	Rw3G002840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	4 cut(s)	128, 524, 537, 643
AcsI	RAATTY	2 cut(s)	368, 492
AcuI	CTGAAG	1 cut(s)	758
AfaI	GTAC	3 cut(s)	354, 465, 587
AfiI	CCNNNNNNNGG	2 cut(s)	263, 270
AgsI	TTSAA	3 cut(s)	270, 431, 562
AluBI	AGCT	6 cut(s)	158, 184, 339, 687, 701, 733
AluI	AGCT	6 cut(s)	158, 184, 339, 687, 701, 733
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	4 cut(s)	128, 524, 537, 643
ApoI	RAATTY	2 cut(s)	368, 492
AspLEI	GCGC	2 cut(s)	572, 647
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	91, 161
AxyI	CCTNAGG	2 cut(s)	174, 657
BamHI	GGATCC	1 cut(s)	529
BbsI	GAAGAC	2 cut(s)	400, 746
BccI	CCATC	4 cut(s)	449, 541, 545, 664
BciVI	GTATCC	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	778
BfmI	CTRYAG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	648
BfuAI	ACCTGC	1 cut(s)	517
BfuI	GTATCC	1 cut(s)	469
BlpI	GCTNAGC	1 cut(s)	641
Bme1390I	CCNGG	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	2 cut(s)	400, 746
BplI	GAGNNNNNCTC	2 cut(s)	676, 708
Bpu10I	CCTNAGC	1 cut(s)	513
Bpu1102I	GCTNAGC	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	264
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 606, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 270
Bse1I	ACTGG	1 cut(s)	537
Bse21I	CCTNAGG	2 cut(s)	174, 657
BseGI	GGATG	3 cut(s)	250, 334, 533
BseLI	CCNNNNNNNGG	2 cut(s)	263, 270
BseMII	CTCAG	5 cut(s)	90, 165, 655, 671, 680
BseNI	ACTGG	1 cut(s)	537
BseYI	CCCAGC	1 cut(s)	697
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	2 cut(s)	263, 270
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	620
Bsp143I	GATC	3 cut(s)	133, 529, 635
Bsp1720I	GCTNAGC	1 cut(s)	641
BspACI	CCGC	1 cut(s)	403
BspCNI	CTCAG	5 cut(s)	91, 166, 654, 670, 679
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	531
BspMAI	CTGCAG	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	517
BspPI	GGATC	4 cut(s)	128, 524, 537, 643
BsrI	ACTGG	1 cut(s)	537
BssMI	GATC	3 cut(s)	133, 529, 635
Bst4CI	ACNGT	2 cut(s)	119, 579
BstDEI	CTNAG	6 cut(s)	99, 174, 513, 641, 657, 666
BstEII	GGTNACC	1 cut(s)	79
BstF5I	GGATG	3 cut(s)	250, 334, 533
BstH2I	RGCGCY	1 cut(s)	648
BstHHI	GCGC	2 cut(s)	572, 647
BstKTI	GATC	3 cut(s)	136, 532, 638
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	3 cut(s)	133, 529, 635
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 509, 719
BstPI	GGTNACC	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	207
BstV2I	GAAGAC	2 cut(s)	400, 746
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
Bsu36I	CCTNAGG	2 cut(s)	174, 657
BsuI	GTATCC	1 cut(s)	469
BtsCI	GGATG	3 cut(s)	250, 334, 533
BtsIMutI	CAGTG	2 cut(s)	124, 544
BveI	ACCTGC	1 cut(s)	517
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	2 cut(s)	572, 647
Csp6I	GTAC	3 cut(s)	353, 464, 586
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	8 cut(s)	158, 184, 200, 339, 674, 687, 701, 733
CviKI_1	RGCY	8 cut(s)	158, 184, 200, 339, 674, 687, 701, 733
CviQI	GTAC	3 cut(s)	353, 464, 586
DdeI	CTNAG	6 cut(s)	99, 174, 513, 641, 657, 666
DpnI	GATC	3 cut(s)	135, 531, 637
DpnII	GATC	3 cut(s)	133, 529, 635
Eco32I	GATATC	2 cut(s)	217, 295
Eco57I	CTGAAG	1 cut(s)	758
Eco81I	CCTNAGG	2 cut(s)	174, 657
Eco91I	GGTNACC	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	368
EcoRV	GATATC	2 cut(s)	217, 295
FaeI	CATG	1 cut(s)	314
FalI	AAGNNNNNCTT	2 cut(s)	671, 703
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	1 cut(s)	310
FauI	CCCGC	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	519
FokI	GGATG	3 cut(s)	257, 341, 520
FspBI	CTAG	1 cut(s)	778
GlaI	GCGC	2 cut(s)	571, 646
GsaI	CCCAGC	1 cut(s)	701
HaeII	RGCGCY	1 cut(s)	648
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	2 cut(s)	572, 647
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	2 cut(s)	570, 645
HinP1I	GCGC	2 cut(s)	570, 645
HindIII	AAGCTT	1 cut(s)	182
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	91, 161
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	5 cut(s)	100, 583, 669, 728, 738
Hpy188III	TCNNGA	5 cut(s)	173, 220, 284, 311, 659
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	3 cut(s)	190, 263, 319
HpyCH4III	ACNGT	2 cut(s)	119, 579
HpyCH4V	TGCA	4 cut(s)	105, 209, 332, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 509, 719
HpyF3I	CTNAG	6 cut(s)	99, 174, 513, 641, 657, 666
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	2 cut(s)	570, 645
Kzo9I	GATC	3 cut(s)	133, 529, 635
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	778
MaeIII	GTNAC	4 cut(s)	79, 91, 202, 385
MalI	GATC	3 cut(s)	135, 531, 637
MboI	GATC	3 cut(s)	133, 529, 635
MboII	GAAGA	5 cut(s)	22, 161, 224, 400, 751
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	5 cut(s)	229, 237, 368, 394, 492
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	4 cut(s)	169, 235, 520, 666
MseI	TTAA	1 cut(s)	186
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	264
MunI	CAATTG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	206, 509, 719
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	133, 529, 635
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	1 cut(s)	531
NmuCI	GTSAC	2 cut(s)	79, 385
PagI	TCATGA	1 cut(s)	310
PspEI	GGTNACC	1 cut(s)	79
PspFI	CCCAGC	1 cut(s)	697
PspN4I	GGNNCC	1 cut(s)	531
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	3 cut(s)	354, 465, 587
RsaNI	GTAC	3 cut(s)	353, 464, 586
SaqAI	TTAA	1 cut(s)	186
Sau3AI	GATC	3 cut(s)	133, 529, 635
ScrFI	CCNGG	1 cut(s)	264
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	5 cut(s)	229, 237, 368, 394, 492
SsiI	CCGC	1 cut(s)	403
SspMI	CTAG	1 cut(s)	778
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	2 cut(s)	119, 579
TaqI	TCGA	1 cut(s)	746
TaqII	GACCGA	2 cut(s)	42, 98
TasI	AATT	5 cut(s)	229, 237, 368, 394, 492
TatI	WGTACW	1 cut(s)	585
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	124, 544
TseFI	GTSAC	2 cut(s)	79, 385
Tsp45I	GTSAC	2 cut(s)	79, 385
TspDTI	ATGAA	3 cut(s)	81, 126, 299
TspRI	CASTG	2 cut(s)	124, 544
XapI	RAATTY	2 cut(s)	368, 492
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.