Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Reverse (-)

1518857 .. 1521909

Gene Structure 3053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGTTGCAAGAACCCCACAGAAGCAGAGGAAAGTGGCGATGGTGGTGCCTCCTCTCAACTCAGATCTTCTCAAGGAAACGATCAACAAGGTTGATAAATGTATGGAAAGACTGCAAGAGCTACAGTACACAATTGCAGGAGGAACCAAAGTTGTCTCTGGTGTGAACCTTAGCCCTCGAAGCACTAGAATTTACTTGAAGACTAGTCTTAGATGCAAGCAAGAAACTTTAAGGATCAAGAATGCTACTAATAAGAAATCTCCAGTAGGGAAGTTTCCTGCTTCCTCACCAGGAGATTGGAGGAAAATGTCACTCCCAGCAATGCTACTAGGAGAGACTGTAAATGAAATCTTACAAGCCTCACAGGTCACAAGAGACATTGTGGACGCCATAGCACCAAAGAAGAGTAGAAAGTCCAGGAGATTAACAATGTCACAAGAAGACGATGGCCCTAAAACACCCGAGACACAACAAAAATCCCGGGAACAGAATCCTGAAACTGTCAGTAGCAATATCAAAGCAAGAAGGAAGAAAGAGAAGCAGAACAGACGATCAGAATCAGATTCTCCTCCATCTCTACAAAGGGCACGCTCAAGAATTGCGTTCAGAACCATCTCTCCACAAGTAAAGGGAAATAATGGTGAGAATAGTTTTCGGCATTTGGCCAACAGGGTTTCACCAAAGCACAAACCTTGGGTTAAAAAGGCGGTTCTTTTTCCGAACCCTCTATTTATTTCCGGTACCGCTACACAACAAGCAAAGTTCAGTAGAACAATGTCTCCGGTCATAGCCAGAAATGAGATATCCAGCATCAAGAACAATAAAGAAACGCCTTACAAGTTCTTAATCAAATCTCCTCCCACATCAGCATCTAAGTTTCAGGTCAAGATCAGGAGCCCACCTAAGGTCTTGGTTTCTCCTACAAGAAATGGCAGTAACTCGGTTCGGAAGTCACCTAGAGGCTCCAGGTCTCCGACAAGAACTGTTAACTTAGGAAAGAAGTCAGCGTCGATTTCTCCTATTAGAAATACGGGAAAGAGGTCTCCAAAGCTATCAACTGCTGCTAAGCTCAGAAGATCATTTACTCCTACGAGAAATGGCAGTAACTTGGCTCGTAAGTCGTCTATTTCTCCGAAAAGAGTCACACTTCAAGCATTTCTTTCTCCAACAAGAAATGGTAACTTTTGTAAGAAGTCACCCAAAGCTTCGATTTCTCCAACTAGGGTGTGCAACAAGTCGCAGAAGCTGTCAACGGCTGCAAAGTTCAGGAGGTCATTTTCGCCATCGAGACTAGCTATGAGGTTTGTATCTCCAATGAAGAGCAGGAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

444

Amino Acids

49.52

Weight (kDa)

11.7

Isoelectric Point (pI)

71.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	740
AccB1I	GGYRCC	2 cut(s)	46, 740
AciI	CCGC	2 cut(s)	707, 744
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	2 cut(s)	128, 742
AfiI	CCNNNNNNNGG	1 cut(s)	904
AgsI	TTSAA	2 cut(s)	199, 1151
AhlI	ACTAGT	1 cut(s)	203
AjnI	CCWGG	3 cut(s)	289, 416, 965
AloI	GAACNNNNNNTCC	4 cut(s)	601, 633, 763, 795
AluBI	AGCT	6 cut(s)	121, 1051, 1069, 1205, 1246, 1295
AluI	AGCT	6 cut(s)	121, 1051, 1069, 1205, 1246, 1295
Alw26I	GTCTC	8 cut(s)	160, 329, 369, 458, 783, 975, 1047, 1282
AlwI	GGATC	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	1246
Ama87I	CYCGRG	2 cut(s)	461, 480
AoxI	GGCC	2 cut(s)	448, 663
ApeKI	GCWGC	2 cut(s)	1061, 1256
ApoI	RAATTY	1 cut(s)	189
Asp718I	GGTACC	1 cut(s)	740
AspS9I	GGNCC	1 cut(s)	449
AsuC2I	CCSGG	2 cut(s)	481, 482
AsuHPI	GGTGA	5 cut(s)	279, 653, 669, 945, 1188
AvaI	CYCGRG	2 cut(s)	461, 480
AxyI	CCTNAGG	1 cut(s)	903
BaeGI	GKGCMC	1 cut(s)	589
BalI	TGGCCA	1 cut(s)	665
BanI	GGYRCC	2 cut(s)	46, 740
BanII	GRGCYC	1 cut(s)	899
BarI	GAAGNNNNNNTAC	2 cut(s)	1066, 1098
BbsI	GAAGAC	2 cut(s)	206, 447
BbvI	GCAGC	2 cut(s)	1048, 1243
BccI	CCATC	5 cut(s)	34, 440, 580, 620, 1291
BceAI	ACGGC	1 cut(s)	1269
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	3 cut(s)	291, 418, 967
BcnI	CCSGG	2 cut(s)	481, 482
BcoDI	GTCTC	8 cut(s)	160, 329, 369, 458, 783, 975, 1047, 1282
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	6 cut(s)	186, 204, 329, 957, 1221, 1292
BfmI	CTRYAG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	2 cut(s)	1062, 1257
BlpI	GCTNAGC	1 cut(s)	1065
BlsI	GCNGC	2 cut(s)	1063, 1258
Bme1390I	CCNGG	5 cut(s)	291, 418, 481, 482, 967
BmeT110I	CYCGRG	2 cut(s)	461, 480
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	5 cut(s)	48, 145, 742, 896, 964
BmrFI	CCNGG	5 cut(s)	291, 418, 481, 482, 967
BmsI	GCATC	3 cut(s)	203, 819, 878
BpiI	GAAGAC	2 cut(s)	206, 447
BpmI	CTGGAG	2 cut(s)	246, 949
Bpu10I	CCTNAGC	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	1065
BpuEI	CTTGAG	2 cut(s)	56, 577
BpuMI	CCSGG	2 cut(s)	481, 482
BsaBI	GATNNNNATC	1 cut(s)	556
BsaHI	GRCGYC	1 cut(s)	387
BsaI	GGTCTC	2 cut(s)	975, 1047
BsaJI	CCNNGG	2 cut(s)	480, 692
BsaWI	WCCGGW	2 cut(s)	737, 781
BsaXI	ACNNNNNCTCC	6 cut(s)	324, 354, 601, 631, 763, 793
Bsc4I	CCNNNNNNNGG	1 cut(s)	904
Bse1I	ACTGG	1 cut(s)	263
Bse21I	CCTNAGG	1 cut(s)	903
Bse3DI	GCAATG	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	556
BseBI	CCWGG	3 cut(s)	291, 418, 967
BseDI	CCNNGG	2 cut(s)	480, 692
BseJI	GATNNNNATC	1 cut(s)	556
BseLI	CCNNNNNNNGG	1 cut(s)	904
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	75, 1084
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	3 cut(s)	42, 558, 846
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	2 cut(s)	1048, 1243
BseYI	CCCAGC	1 cut(s)	316
BshFI	GGCC	2 cut(s)	450, 665
BshNI	GGYRCC	2 cut(s)	46, 740
BsiHKCI	CYCGRG	2 cut(s)	461, 480
BsiSI	CCGG	3 cut(s)	481, 738, 782
BslI	CCNNNNNNNGG	1 cut(s)	904
BsmAI	GTCTC	8 cut(s)	160, 329, 369, 458, 783, 975, 1047, 1282
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	450, 665
Bso31I	GGTCTC	2 cut(s)	975, 1047
BsoBI	CYCGRG	2 cut(s)	461, 480
Bsp1286I	GDGCHC	2 cut(s)	589, 899
Bsp143I	GATC	6 cut(s)	64, 81, 234, 551, 888, 1076
Bsp1720I	GCTNAGC	1 cut(s)	1065
BspACI	CCGC	2 cut(s)	707, 744
BspANI	GGCC	2 cut(s)	450, 665
BspCNI	CTCAG	2 cut(s)	74, 1083
BspLI	GGNNCC	5 cut(s)	48, 145, 742, 896, 964
BspPI	GGATC	1 cut(s)	242
BspQI	GCTCTTC	1 cut(s)	1313
BspT107I	GGYRCC	2 cut(s)	46, 740
BspTNI	GGTCTC	2 cut(s)	975, 1047
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	480, 692
BssMI	GATC	6 cut(s)	64, 81, 234, 551, 888, 1076
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	692
Bst2UI	CCWGG	3 cut(s)	291, 418, 967
Bst4CI	ACNGT	4 cut(s)	126, 340, 502, 985
Bst6I	CTCTTC	2 cut(s)	398, 1313
BstACI	GRCGYC	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	218, 589
BstDEI	CTNAG	8 cut(s)	61, 170, 209, 873, 903, 991, 1065, 1070
BstKTI	GATC	6 cut(s)	67, 84, 237, 554, 891, 1079
BstMAI	GTCTC	8 cut(s)	160, 329, 369, 458, 783, 975, 1047, 1282
BstMBI	GATC	6 cut(s)	64, 81, 234, 551, 888, 1076
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	3 cut(s)	291, 418, 967
BstSCI	CCNGG	5 cut(s)	289, 416, 479, 480, 965
BstSFI	CTRYAG	1 cut(s)	122
BstSLI	GKGCMC	1 cut(s)	589
BstV1I	GCAGC	2 cut(s)	1048, 1243
BstV2I	GAAGAC	2 cut(s)	206, 447
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	64
Bsu36I	CCTNAGG	1 cut(s)	903
BsuRI	GGCC	2 cut(s)	450, 665
BtgZI	GCGATG	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	218, 589
CaiI	CAGNNNCTG	1 cut(s)	1246
Cfr13I	GGNCC	1 cut(s)	449
Cfr9I	CCCGGG	1 cut(s)	480
CseI	GACGC	2 cut(s)	395, 996
Csp6I	GTAC	2 cut(s)	127, 741
CviQI	GTAC	2 cut(s)	127, 741
DdeI	CTNAG	8 cut(s)	61, 170, 209, 873, 903, 991, 1065, 1070
DpnI	GATC	6 cut(s)	66, 83, 236, 553, 890, 1078
DpnII	GATC	6 cut(s)	64, 81, 234, 551, 888, 1076
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	2 cut(s)	398, 1313
EarI	CTCTTC	2 cut(s)	398, 1313
Eco130I	CCWWGG	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	899
Eco31I	GGTCTC	2 cut(s)	975, 1047
Eco32I	GATATC	1 cut(s)	804
Eco81I	CCTNAGG	1 cut(s)	903
Eco88I	CYCGRG	2 cut(s)	461, 480
EcoRII	CCWGG	3 cut(s)	289, 416, 965
EcoRV	GATATC	1 cut(s)	804
EcoT14I	CCWWGG	1 cut(s)	692
EcoT38I	GRGCYC	1 cut(s)	899
ErhI	CCWWGG	1 cut(s)	692
FaiI	YATR	4 cut(s)	104, 392, 788, 1298
FalI	AAGNNNNNCTT	2 cut(s)	1143, 1175
Fnu4HI	GCNGC	2 cut(s)	1062, 1257
FriOI	GRGCYC	1 cut(s)	899
Fsp4HI	GCNGC	2 cut(s)	1062, 1257
FspBI	CTAG	6 cut(s)	186, 204, 329, 957, 1221, 1292
GluI	GCNGC	2 cut(s)	1062, 1257
GsaI	CCCAGC	1 cut(s)	320
GsuI	CTGGAG	2 cut(s)	246, 949
HaeIII	GGCC	2 cut(s)	450, 665
HapII	CCGG	3 cut(s)	481, 738, 782
HgaI	GACGC	2 cut(s)	395, 996
Hin1I	GRCGYC	1 cut(s)	387
HincII	GTYRAC	2 cut(s)	988, 1251
HindII	GTYRAC	2 cut(s)	988, 1251
HindIII	AAGCTT	1 cut(s)	1203
HinfI	GANTC	4 cut(s)	490, 557, 563, 1140
HpaI	GTTAAC	1 cut(s)	988
HpaII	CCGG	3 cut(s)	481, 738, 782
HphI	GGTGA	5 cut(s)	279, 653, 669, 945, 1188
Hpy166II	GTNNAC	5 cut(s)	129, 166, 385, 988, 1251
Hpy188I	TCNGA	9 cut(s)	64, 556, 562, 608, 720, 948, 975, 1073, 1134
Hpy188III	TCNNGA	8 cut(s)	238, 494, 594, 814, 886, 892, 1267, 1287
Hpy8I	GTNNAC	5 cut(s)	129, 166, 385, 988, 1251
Hpy99I	CGWCG	1 cut(s)	1012
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	4 cut(s)	126, 340, 502, 985
HpyCH4V	TGCA	6 cut(s)	8, 115, 137, 216, 1230, 1259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	8 cut(s)	61, 170, 209, 873, 903, 991, 1065, 1070
Hsp92I	GRCGYC	1 cut(s)	387
KpnI	GGTACC	1 cut(s)	744
KspAI	GTTAAC	1 cut(s)	988
Kzo9I	GATC	6 cut(s)	64, 81, 234, 551, 888, 1076
LguI	GCTCTTC	1 cut(s)	1313
LmnI	GCTCC	2 cut(s)	894, 968
Lsp1109I	GCAGC	2 cut(s)	1048, 1243
LweI	GCATC	3 cut(s)	203, 819, 878
MaeI	CTAG	6 cut(s)	186, 204, 329, 957, 1221, 1292
MaeIII	GTNAC	9 cut(s)	309, 367, 432, 935, 951, 1103, 1141, 1178, 1194
MalI	GATC	6 cut(s)	66, 83, 236, 553, 890, 1078
MboI	GATC	6 cut(s)	64, 81, 234, 551, 888, 1076
MboII	GAAGA	7 cut(s)	59, 211, 415, 452, 541, 1086, 1330
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	2 cut(s)	589, 899
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	3 cut(s)	132, 189, 597
MluNI	TGGCCA	1 cut(s)	665
MlyI	GAGTC	1 cut(s)	1149
MmeI	TCCRAC	3 cut(s)	998, 1190, 1241
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	5 cut(s)	230, 425, 699, 845, 987
Msp20I	TGGCCA	1 cut(s)	665
MspI	CCGG	3 cut(s)	481, 738, 782
MspR9I	CCNGG	5 cut(s)	291, 418, 481, 482, 967
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	3 cut(s)	291, 418, 967
MwoI	GCNNNNNNNGC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	481, 482
NdeII	GATC	6 cut(s)	64, 81, 234, 551, 888, 1076
NlaIV	GGNNCC	5 cut(s)	48, 145, 742, 896, 964
NmuCI	GTSAC	6 cut(s)	309, 367, 432, 951, 1141, 1194
PciSI	GCTCTTC	1 cut(s)	1313
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	3 cut(s)	490, 557, 563
PfoI	TCCNGGA	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	1063, 1258
PleI	GAGTC	1 cut(s)	1148
PpsI	GAGTC	1 cut(s)	1148
Psp6I	CCWGG	3 cut(s)	289, 416, 965
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	3 cut(s)	289, 416, 965
PspN4I	GGNNCC	5 cut(s)	48, 145, 742, 896, 964
PspPI	GGNCC	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	1246
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	128, 742
RsaNI	GTAC	2 cut(s)	127, 741
SapI	GCTCTTC	1 cut(s)	1313
SaqAI	TTAA	5 cut(s)	230, 425, 699, 845, 987
SatI	GCNGC	2 cut(s)	1062, 1257
Sau3AI	GATC	6 cut(s)	64, 81, 234, 551, 888, 1076
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	1 cut(s)	1149
ScrFI	CCNGG	5 cut(s)	291, 418, 481, 482, 967
SduI	GDGCHC	2 cut(s)	589, 899
SfaNI	GCATC	3 cut(s)	203, 819, 878
SfcI	CTRYAG	1 cut(s)	122
SmaI	CCCGGG	1 cut(s)	482
SmlI	CTYRAG	2 cut(s)	71, 592
SmoI	CTYRAG	2 cut(s)	71, 592
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	3 cut(s)	132, 189, 597
SsiI	CCGC	2 cut(s)	707, 744
SspMI	CTAG	6 cut(s)	186, 204, 329, 957, 1221, 1292
StyD4I	CCNGG	5 cut(s)	289, 416, 479, 480, 965
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	4 cut(s)	126, 340, 502, 985
TaqI	TCGA	4 cut(s)	178, 1010, 1208, 1286
TasI	AATT	3 cut(s)	132, 189, 597
TatI	WGTACW	1 cut(s)	126
TfiI	GAWTC	3 cut(s)	490, 557, 563
Tru1I	TTAA	5 cut(s)	230, 425, 699, 845, 987
Tru9I	TTAA	5 cut(s)	230, 425, 699, 845, 987
TseFI	GTSAC	6 cut(s)	309, 367, 432, 951, 1141, 1194
TseI	GCWGC	2 cut(s)	1061, 1256
Tsp45I	GTSAC	6 cut(s)	309, 367, 432, 951, 1141, 1194
TspDTI	ATGAA	2 cut(s)	360, 1331
TspMI	CCCGGG	1 cut(s)	480
XapI	RAATTY	1 cut(s)	189
XmaI	CCCGGG	1 cut(s)	480
XspI	CTAG	6 cut(s)	186, 204, 329, 957, 1221, 1292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.