Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Forward (+)

45674335 .. 45676041

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025420

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGTTGCTAAAACCCCACCAAAGCAGAGGAAGATGGTAGCCCCTCTCAATCCAGCTCTGCTTAGAGAAACAGTGAAGAAGGTGGATCGGTGTATGGCTAGGTTGCAGGAGCTACAGTACACAGTGACAGGTGGGACGAAGGTGATCTCGGGAGTGAGTCTCAGCCCGAGAAGTACTAGAGTTTATCTGAGGACTAGTCTTAGATGCAAACAAGAATCTGCAAGGATTAAAGGTTTGACGCCGAGGAAATCGCCGGTGGGGAAGTTTCCGGCTGGGAAGTCTCCGGCAAAGTTAGCAGGGGAATGGCAGAGAATGTCACTGCCGGCAATGCTGCTCAGCGAAACAGTCGGAGAAATTCTTCATTCAAGTCAATTTGCAAGAGAGATAGTAGCATCAGTCCCAAAGAAAACCACCATAGAAGACCCCAAAACCCCAATGACCCAACAGAGGAAACAGAGACCACCCCCTGAAAACACAGAGCTCAGGGCCAGAAGAAAGAAGGAGAAGCACAACAAATCTCAATCCAACCGATCAGAAGCTGGCTCACCAGTGCTCCAACGAGCCCGGTCCCGAATTAACTTCAAGGTTTCGCCTCCTAAGAAGAGAGAGATAGAGAAAGAAAACACCAGATACTTAGCAAACAGAGTGTCTCCCAAAAACAGACCGTGGGCTAAAAAGAGTGTATTGTTTCCCAACCCTTTGTTTTCGGCCACCGATACTTCACCTCAGCAAAAGAAGTTTTGTAGAACAAGGTCACCAATGACTGGAAGAAGTACTAACAATACTCAGCAGATTCAAACTCCACACAAGTTCTTGATCAAGTCTCCAGCTTCGGCTTCAAAGTTCCAGGTCAAGATTAAGAGCCCTCCATTGGTTTCTTCTCTTTCGCCAACTAAGGCCAAGAAGTCGCCAAAGAAATCTGCTGTCTCGAAACTGCGGCGGTCATTTTCTCCGTCGAGATTGGCTACTAGATTGGTGTCTCTGTCTCCATTGAAGAGCAGGAAGAGTGTGCAGAAGAGTGAGGGACTAATAATGCCGGGTTTGAAACAGCGTCCAACTTCCTCAATGCCACTGGGAGTTTCAGCTCGGAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

40.81

Weight (kDa)

11.65

Isoelectric Point (pI)

71.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	764
AciI	CCGC	2 cut(s)	937, 940
AclWI	GGATC	1 cut(s)	93
AcoI	YGGCCR	1 cut(s)	708
AcsI	RAATTY	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	3 cut(s)	119, 175, 775
AfiI	CCNNNNNNNGG	3 cut(s)	447, 764, 871
AgsI	TTSAA	6 cut(s)	366, 583, 797, 840, 994, 1045
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	846
AluBI	AGCT	6 cut(s)	56, 112, 481, 539, 830, 1085
AluI	AGCT	6 cut(s)	56, 112, 481, 539, 830, 1085
Alw21I	GWGCWC	2 cut(s)	483, 555
Alw26I	GTCTC	8 cut(s)	164, 285, 451, 654, 828, 931, 984, 990
AlwI	GGATC	1 cut(s)	93
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	2 cut(s)	148, 166
AoxI	GGCC	3 cut(s)	486, 708, 897
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	1 cut(s)	354
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	486, 567
AsuC2I	CCSGG	2 cut(s)	565, 1038
AsuHPI	GGTGA	4 cut(s)	154, 537, 714, 747
AvaI	CYCGRG	2 cut(s)	148, 166
AvaII	GGWCC	1 cut(s)	567
BanII	GRGCYC	3 cut(s)	483, 565, 866
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	483, 555
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	848
BclI	TGATCA	1 cut(s)	816
BcnI	CCSGG	2 cut(s)	565, 1038
BcoDI	GTCTC	8 cut(s)	164, 285, 451, 654, 828, 931, 984, 990
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	4 cut(s)	99, 177, 195, 969
BfmI	CTRYAG	1 cut(s)	113
BisI	GCNGC	2 cut(s)	332, 938
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	2 cut(s)	333, 939
BmcAI	AGTACT	2 cut(s)	175, 775
Bme1390I	CCNGG	3 cut(s)	565, 848, 1038
Bme18I	GGWCC	1 cut(s)	567
BmeT110I	CYCGRG	2 cut(s)	148, 166
BmgT120I	GGNCC	2 cut(s)	486, 567
BmiI	GGNNCC	1 cut(s)	569
BmrFI	CCNGG	3 cut(s)	565, 848, 1038
BmrI	ACTGGG	1 cut(s)	1082
BmsI	GCATC	2 cut(s)	194, 401
BmuI	ACTGGG	1 cut(s)	1082
BpiI	GAAGAC	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BpmI	CTGGAG	1 cut(s)	810
Bpu10I	CCTNAGC	2 cut(s)	482, 726
Bpu1102I	GCTNAGC	1 cut(s)	335
BpuMI	CCSGG	2 cut(s)	565, 1038
BsaHI	GRCGYC	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	451
BsaJI	CCNNGG	2 cut(s)	242, 665
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 537, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	447, 764, 871
Bse118I	RCCGGY	2 cut(s)	253, 322
Bse1I	ACTGG	3 cut(s)	548, 769, 1077
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	848
BseDI	CCNNGG	2 cut(s)	242, 665
BseLI	CCNNNNNNNGG	3 cut(s)	447, 764, 871
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	6 cut(s)	175, 179, 349, 496, 740, 800
BseNI	ACTGG	3 cut(s)	548, 769, 1077
BseXI	GCAGC	1 cut(s)	318
BseYI	CCCAGC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	1031
BshFI	GGCC	3 cut(s)	488, 710, 899
BsiHKAI	GWGCWC	2 cut(s)	483, 555
BsiHKCI	CYCGRG	2 cut(s)	148, 166
BsiSI	CCGG	6 cut(s)	254, 269, 284, 323, 565, 1037
BslFI	GGGAC	4 cut(s)	148, 383, 553, 1038
BslI	CCNNNNNNNGG	3 cut(s)	447, 764, 871
BsmAI	GTCTC	8 cut(s)	164, 285, 451, 654, 828, 931, 984, 990
BsmFI	GGGAC	4 cut(s)	148, 383, 553, 1038
BsnI	GGCC	3 cut(s)	488, 710, 899
Bso31I	GGTCTC	1 cut(s)	451
BsoBI	CYCGRG	2 cut(s)	148, 166
Bsp1286I	GDGCHC	4 cut(s)	483, 555, 565, 866
Bsp143I	GATC	4 cut(s)	85, 144, 530, 816
Bsp1720I	GCTNAGC	1 cut(s)	335
BspACI	CCGC	2 cut(s)	937, 940
BspANI	GGCC	3 cut(s)	488, 710, 899
BspCNI	CTCAG	6 cut(s)	174, 180, 348, 495, 739, 799
BspLI	GGNNCC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	989
BspTNI	GGTCTC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	2 cut(s)	253, 322
BsrI	ACTGG	3 cut(s)	548, 769, 1077
BssAI	RCCGGY	2 cut(s)	253, 322
BssECI	CCNNGG	2 cut(s)	242, 665
BssMI	GATC	4 cut(s)	85, 144, 530, 816
BssNI	GRCGYC	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	848
Bst4CI	ACNGT	5 cut(s)	73, 117, 124, 346, 666
Bst6I	CTCTTC	4 cut(s)	596, 989, 998, 1010
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	324, 541
BstDSI	CCRYGG	1 cut(s)	665
BstEII	GGTNACC	1 cut(s)	753
BstKTI	GATC	4 cut(s)	88, 147, 533, 819
BstMAI	GTCTC	8 cut(s)	164, 285, 451, 654, 828, 931, 984, 990
BstMBI	GATC	4 cut(s)	85, 144, 530, 816
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 328
BstNI	CCWGG	1 cut(s)	848
BstPI	GGTNACC	1 cut(s)	753
BstSCI	CCNGG	3 cut(s)	563, 846, 1036
BstSFI	CTRYAG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	318
BstV2I	GAAGAC	1 cut(s)	426
BsuRI	GGCC	3 cut(s)	488, 710, 899
BtgI	CCRYGG	1 cut(s)	665
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	5 cut(s)	78, 129, 317, 555, 1070
Cac8I	GCNNGC	2 cut(s)	324, 541
CaiI	CAGNNNCTG	1 cut(s)	539
Cfr10I	RCCGGY	2 cut(s)	253, 322
Cfr13I	GGNCC	2 cut(s)	486, 567
CseI	GACGC	2 cut(s)	247, 1040
Csp6I	GTAC	3 cut(s)	118, 174, 774
CviQI	GTAC	3 cut(s)	118, 174, 774
DpnI	GATC	4 cut(s)	87, 146, 532, 818
DpnII	GATC	4 cut(s)	85, 144, 530, 816
EaeI	YGGCCR	1 cut(s)	708
Eam1104I	CTCTTC	4 cut(s)	596, 989, 998, 1010
EarI	CTCTTC	4 cut(s)	596, 989, 998, 1010
Ecl136II	GAGCTC	1 cut(s)	481
Eco24I	GRGCYC	3 cut(s)	483, 565, 866
Eco31I	GGTCTC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	567
Eco53kI	GAGCTC	1 cut(s)	481
Eco88I	CYCGRG	2 cut(s)	148, 166
Eco91I	GGTNACC	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	753
EcoRII	CCWGG	1 cut(s)	846
EcoT38I	GRGCYC	3 cut(s)	483, 565, 866
FaiI	YATR	2 cut(s)	95, 416
FaqI	GGGAC	4 cut(s)	148, 383, 553, 1038
FbaI	TGATCA	1 cut(s)	816
Fnu4HI	GCNGC	2 cut(s)	332, 938
FriOI	GRGCYC	3 cut(s)	483, 565, 866
Fsp4HI	GCNGC	2 cut(s)	332, 938
FspBI	CTAG	4 cut(s)	99, 177, 195, 969
GluI	GCNGC	2 cut(s)	332, 938
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	3 cut(s)	488, 710, 899
HapII	CCGG	6 cut(s)	254, 269, 284, 323, 565, 1037
HgaI	GACGC	2 cut(s)	247, 1040
Hin1I	GRCGYC	1 cut(s)	239
HinfI	GANTC	3 cut(s)	157, 215, 793
HpaII	CCGG	6 cut(s)	254, 269, 284, 323, 565, 1037
HphI	GGTGA	4 cut(s)	154, 537, 714, 747
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	4 cut(s)	189, 350, 535, 1089
Hpy188III	TCNNGA	6 cut(s)	150, 570, 814, 853, 928, 957
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	1 cut(s)	958
HpyAV	CCTTC	3 cut(s)	73, 133, 493
HpyCH4III	ACNGT	5 cut(s)	73, 117, 124, 346, 666
HpyCH4V	TGCA	5 cut(s)	106, 207, 221, 377, 1012
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 328
Hsp92I	GRCGYC	1 cut(s)	239
KroI	GCCGGC	1 cut(s)	322
KroNI	GCCGGC	1 cut(s)	324
Ksp22I	TGATCA	1 cut(s)	816
Kzo9I	GATC	4 cut(s)	85, 144, 530, 816
LguI	GCTCTTC	1 cut(s)	989
LmnI	GCTCC	2 cut(s)	109, 558
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	2 cut(s)	194, 401
MaeI	CTAG	4 cut(s)	99, 177, 195, 969
MaeIII	GTNAC	3 cut(s)	124, 315, 753
MalI	GATC	4 cut(s)	87, 146, 532, 818
MboI	GATC	4 cut(s)	85, 144, 530, 816
MhlI	GDGCHC	4 cut(s)	483, 555, 565, 866
MluCI	AATT	4 cut(s)	354, 371, 573, 1093
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	4 cut(s)	328, 549, 580, 1079
MroNI	GCCGGC	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	4 cut(s)	228, 576, 858, 1096
MspI	CCGG	6 cut(s)	254, 269, 284, 323, 565, 1037
MspR9I	CCNGG	3 cut(s)	565, 848, 1038
MvaI	CCWGG	1 cut(s)	848
MwoI	GCNNNNNNNGC	2 cut(s)	293, 328
NaeI	GCCGGC	1 cut(s)	324
NciI	CCSGG	2 cut(s)	565, 1038
NdeII	GATC	4 cut(s)	85, 144, 530, 816
NgoMIV	GCCGGC	1 cut(s)	322
NlaIV	GGNNCC	1 cut(s)	569
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	3 cut(s)	124, 315, 753
PciSI	GCTCTTC	1 cut(s)	989
PdiI	GCCGGC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	215, 793
PflMI	CCANNNNNTGG	1 cut(s)	764
PkrI	GCNGC	2 cut(s)	333, 939
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	846
PspEI	GGTNACC	1 cut(s)	753
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	846
PspN4I	GGNNCC	1 cut(s)	569
PspPI	GGNCC	2 cut(s)	486, 567
PstNI	CAGNNNCTG	1 cut(s)	539
RsaI	GTAC	3 cut(s)	119, 175, 775
RsaNI	GTAC	3 cut(s)	118, 174, 774
SacI	GAGCTC	1 cut(s)	483
SapI	GCTCTTC	1 cut(s)	989
SaqAI	TTAA	4 cut(s)	228, 576, 858, 1096
SatI	GCNGC	2 cut(s)	332, 938
Sau3AI	GATC	4 cut(s)	85, 144, 530, 816
Sau96I	GGNCC	2 cut(s)	486, 567
ScaI	AGTACT	2 cut(s)	175, 775
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	3 cut(s)	565, 848, 1038
SduI	GDGCHC	4 cut(s)	483, 555, 565, 866
SfaNI	GCATC	2 cut(s)	194, 401
SfcI	CTRYAG	1 cut(s)	113
SgrAI	CRCCGGYG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	567
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	4 cut(s)	354, 371, 573, 1093
SsiI	CCGC	2 cut(s)	937, 940
SspMI	CTAG	4 cut(s)	99, 177, 195, 969
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	3 cut(s)	563, 846, 1036
TaaI	ACNGT	5 cut(s)	73, 117, 124, 346, 666
TaqI	TCGA	2 cut(s)	929, 956
TasI	AATT	4 cut(s)	354, 371, 573, 1093
TatI	WGTACW	3 cut(s)	117, 173, 773
TauI	GCSGC	1 cut(s)	940
TfiI	GAWTC	2 cut(s)	215, 793
Tru1I	TTAA	4 cut(s)	228, 576, 858, 1096
Tru9I	TTAA	4 cut(s)	228, 576, 858, 1096
TscAI	CASTG	5 cut(s)	78, 129, 324, 555, 1077
TseFI	GTSAC	3 cut(s)	124, 315, 753
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	3 cut(s)	124, 315, 753
TspDTI	ATGAA	1 cut(s)	350
TspGWI	ACGGA	1 cut(s)	942
TspRI	CASTG	5 cut(s)	78, 129, 324, 555, 1077
Van91I	CCANNNNNTGG	1 cut(s)	764
VpaK11BI	GGWCC	1 cut(s)	567
XapI	RAATTY	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	4 cut(s)	99, 177, 195, 969
ZrmI	AGTACT	2 cut(s)	175, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.