Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Reverse (-)

4237434 .. 4238231

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG063500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCACTGCCGGCAATGCTGCTCAGCGAAACAGTCGGAGAAATTCTTCATTCAAGTCAATTTGCAAGAGAAATAGTAGCATCAGTCCCCAAGAAAACCACCATAGAAGACCCCAAAACCCCAATGACCCAACAGAAAAAACAGAGACCACCCCCTGAAAACACAGAGCTCAGGGCCAGAAGAAAGAAGGAGAAGCACAACAAATCTCAATCCAACCGATCAGAAGCTGGCTCACCGGTGCTCCAACGAGCCCGGTCCCGAATTAACTTCAAGGTTTCGCCTCCTAAGAAGAGAGAGATAGAGAAAGAAAACACCAGATACTTAGCAAACAGAGTGTCTCCCAAAAACAGACCATGGGCTAAAAAGAGTGTATTGTTTCCCAACCCCTTGTTTTCGGCCACAGATACTTCACCTCAGCAAAAGAAGTTTTGTAGAACAAGGTCACCAATGATTGGAAGAAGTACTAACAATACTAAACCTCAGACTCAGCAGATTCAGACTCCACACAAGTTCTTGATCAAGTCTCCAGCTTCGGCTTCAAAGTTCCAGGTCAAGATTAAGAGCCCTCCATTGGTTTCTTCTCTTTCGCCAACTAAGGCCAAGAAGTCTCCGAAGAAATCTGCTGTCTCGAAACTGCGGCGGTCATTTTCTCCGTCGAGATTGGCTACTAGATTGGTGTCTCTGTCTCCGTTGAAGAGCAGGAAGAGTGTGCAGAAGAGTGAGGGACTAATAATGCCGGGTTTGAAACAGCGTCCAACTTCCTCAATGCCACTGGGAGTTTCAGCTCGGAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

29.75

Weight (kDa)

11.68

Isoelectric Point (pI)

78.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	452
AciI	CCGC	2 cut(s)	637, 640
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	2 cut(s)	452, 571
AgeI	ACCGGT	1 cut(s)	235
AgsI	TTSAA	5 cut(s)	54, 271, 540, 694, 745
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	4 cut(s)	169, 227, 530, 785
AluI	AGCT	4 cut(s)	169, 227, 530, 785
Alw21I	GWGCWC	2 cut(s)	171, 243
Alw26I	GTCTC	7 cut(s)	139, 342, 528, 612, 631, 684, 690
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	3 cut(s)	174, 396, 597
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AsiGI	ACCGGT	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	174, 255
AsuC2I	CCSGG	2 cut(s)	253, 738
AsuHPI	GGTGA	3 cut(s)	225, 402, 435
AvaII	GGWCC	1 cut(s)	255
BanII	GRGCYC	3 cut(s)	171, 253, 566
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	2 cut(s)	171, 243
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	6
BciT130I	CCWGG	1 cut(s)	548
BclI	TGATCA	1 cut(s)	516
BcnI	CCSGG	2 cut(s)	253, 738
BcoDI	GTCTC	7 cut(s)	139, 342, 528, 612, 631, 684, 690
BfaI	CTAG	1 cut(s)	669
BisI	GCNGC	2 cut(s)	20, 638
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	2 cut(s)	21, 639
BmcAI	AGTACT	1 cut(s)	463
Bme1390I	CCNGG	3 cut(s)	253, 548, 738
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	174, 255
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	3 cut(s)	253, 548, 738
BmrI	ACTGGG	1 cut(s)	782
BmsI	GCATC	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	782
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	2 cut(s)	170, 414
Bpu1102I	GCTNAGC	1 cut(s)	23
BpuMI	CCSGG	2 cut(s)	253, 738
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	353
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 571
Bse118I	RCCGGY	2 cut(s)	10, 235
Bse1I	ACTGG	1 cut(s)	777
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	1 cut(s)	353
BseLI	CCNNNNNNNGG	2 cut(s)	452, 571
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	5 cut(s)	37, 184, 428, 494, 500
BseNI	ACTGG	1 cut(s)	777
BseXI	GCAGC	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	731
BshFI	GGCC	3 cut(s)	176, 398, 599
BshTI	ACCGGT	1 cut(s)	235
BsiHKAI	GWGCWC	2 cut(s)	171, 243
BsiSI	CCGG	4 cut(s)	11, 236, 253, 737
BslFI	GGGAC	3 cut(s)	71, 241, 738
BslI	CCNNNNNNNGG	2 cut(s)	452, 571
BsmAI	GTCTC	7 cut(s)	139, 342, 528, 612, 631, 684, 690
BsmFI	GGGAC	3 cut(s)	71, 241, 738
BsnI	GGCC	3 cut(s)	176, 398, 599
Bso31I	GGTCTC	1 cut(s)	139
Bsp1286I	GDGCHC	4 cut(s)	171, 243, 253, 566
Bsp143I	GATC	2 cut(s)	218, 516
Bsp1720I	GCTNAGC	1 cut(s)	23
Bsp19I	CCATGG	1 cut(s)	353
BspACI	CCGC	2 cut(s)	637, 640
BspANI	GGCC	3 cut(s)	176, 398, 599
BspCNI	CTCAG	5 cut(s)	36, 183, 427, 493, 499
BspLI	GGNNCC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	689
BspTNI	GGTCTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	21
BsrFI	RCCGGY	2 cut(s)	10, 235
BsrI	ACTGG	1 cut(s)	777
BssAI	RCCGGY	2 cut(s)	10, 235
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	2 cut(s)	218, 516
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	4 cut(s)	284, 689, 698, 710
BstC8I	GCNNGC	2 cut(s)	12, 229
BstDEI	CTNAG	8 cut(s)	23, 170, 285, 322, 414, 480, 486, 594
BstDSI	CCRYGG	1 cut(s)	353
BstEII	GGTNACC	1 cut(s)	441
BstKTI	GATC	2 cut(s)	221, 519
BstMAI	GTCTC	7 cut(s)	139, 342, 528, 612, 631, 684, 690
BstMBI	GATC	2 cut(s)	218, 516
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	548
BstPI	GGTNACC	1 cut(s)	441
BstSCI	CCNGG	3 cut(s)	251, 546, 736
BstV1I	GCAGC	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	3 cut(s)	176, 398, 599
BtgI	CCRYGG	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	5, 770
Cac8I	GCNNGC	2 cut(s)	12, 229
CaiI	CAGNNNCTG	1 cut(s)	227
Cfr10I	RCCGGY	2 cut(s)	10, 235
Cfr13I	GGNCC	2 cut(s)	174, 255
CseI	GACGC	1 cut(s)	740
Csp6I	GTAC	1 cut(s)	462
CspAI	ACCGGT	1 cut(s)	235
CviAII	CATG	1 cut(s)	354
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	8 cut(s)	23, 170, 285, 322, 414, 480, 486, 594
DpnI	GATC	2 cut(s)	220, 518
DpnII	GATC	2 cut(s)	218, 516
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	4 cut(s)	284, 689, 698, 710
EarI	CTCTTC	4 cut(s)	284, 689, 698, 710
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	3 cut(s)	171, 253, 566
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	169
Eco91I	GGTNACC	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	169
EcoO65I	GGTNACC	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	3 cut(s)	171, 253, 566
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	1 cut(s)	357
FaiI	YATR	2 cut(s)	104, 355
FaqI	GGGAC	3 cut(s)	71, 241, 738
FatI	CATG	1 cut(s)	353
FbaI	TGATCA	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	20, 638
FriOI	GRGCYC	3 cut(s)	171, 253, 566
Fsp4HI	GCNGC	2 cut(s)	20, 638
FspBI	CTAG	1 cut(s)	669
GluI	GCNGC	2 cut(s)	20, 638
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	3 cut(s)	176, 398, 599
HapII	CCGG	4 cut(s)	11, 236, 253, 737
HgaI	GACGC	1 cut(s)	740
Hin1II	CATG	1 cut(s)	357
HinfI	GANTC	3 cut(s)	484, 493, 499
HpaII	CCGG	4 cut(s)	11, 236, 253, 737
HphI	GGTGA	3 cut(s)	225, 402, 435
Hpy188I	TCNGA	6 cut(s)	38, 223, 483, 498, 612, 789
Hpy188III	TCNNGA	5 cut(s)	258, 514, 553, 628, 657
Hpy99I	CGWCG	1 cut(s)	658
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	2 cut(s)	65, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	8 cut(s)	23, 170, 285, 322, 414, 480, 486, 594
Hsp92II	CATG	1 cut(s)	357
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	516
Kzo9I	GATC	2 cut(s)	218, 516
LguI	GCTCTTC	1 cut(s)	689
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	669
MaeIII	GTNAC	2 cut(s)	3, 441
MalI	GATC	2 cut(s)	220, 518
MboI	GATC	2 cut(s)	218, 516
MhlI	GDGCHC	4 cut(s)	171, 243, 253, 566
MluCI	AATT	4 cut(s)	42, 59, 261, 793
MlyI	GAGTC	2 cut(s)	478, 493
MmeI	TCCRAC	4 cut(s)	16, 237, 268, 779
MnlI	CCTC	7 cut(s)	291, 423, 489, 576, 715, 772, 783
MroNI	GCCGGC	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	3 cut(s)	264, 558, 796
MspI	CCGG	4 cut(s)	11, 236, 253, 737
MspR9I	CCNGG	3 cut(s)	253, 548, 738
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	1 cut(s)	16
NaeI	GCCGGC	1 cut(s)	12
NciI	CCSGG	2 cut(s)	253, 738
NcoI	CCATGG	1 cut(s)	353
NdeII	GATC	2 cut(s)	218, 516
NgoMIV	GCCGGC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	357
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	2 cut(s)	3, 441
PciSI	GCTCTTC	1 cut(s)	689
PdiI	GCCGGC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	493
PflMI	CCANNNNNTGG	1 cut(s)	452
PinAI	ACCGGT	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	21, 639
PleI	GAGTC	2 cut(s)	478, 493
PpsI	GAGTC	2 cut(s)	478, 493
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	546
PspEI	GGTNACC	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	2 cut(s)	174, 255
PstNI	CAGNNNCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SacI	GAGCTC	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	3 cut(s)	264, 558, 796
SatI	GCNGC	2 cut(s)	20, 638
Sau3AI	GATC	2 cut(s)	218, 516
Sau96I	GGNCC	2 cut(s)	174, 255
ScaI	AGTACT	1 cut(s)	463
SchI	GAGTC	2 cut(s)	478, 493
ScrFI	CCNGG	3 cut(s)	253, 548, 738
SduI	GDGCHC	4 cut(s)	171, 243, 253, 566
SetI	ASST	9 cut(s)	171, 229, 276, 415, 443, 481, 532, 552, 787
SfaNI	GCATC	1 cut(s)	89
SgrAI	CRCCGGYG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	255
Sse9I	AATT	4 cut(s)	42, 59, 261, 793
SsiI	CCGC	2 cut(s)	637, 640
SspMI	CTAG	1 cut(s)	669
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	251, 546, 736
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	2 cut(s)	629, 656
TasI	AATT	4 cut(s)	42, 59, 261, 793
TatI	WGTACW	1 cut(s)	461
TauI	GCSGC	1 cut(s)	640
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	3 cut(s)	264, 558, 796
Tru9I	TTAA	3 cut(s)	264, 558, 796
TscAI	CASTG	2 cut(s)	12, 777
TseFI	GTSAC	2 cut(s)	3, 441
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	2 cut(s)	3, 441
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	2 cut(s)	642, 678
TspRI	CASTG	2 cut(s)	12, 777
Van91I	CCANNNNNTGG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	1 cut(s)	669
ZrmI	AGTACT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.