Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Forward (+)

25898177 .. 25902040

Gene Structure 3864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1120700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGATGGATGGATGTGTGGCTCGGTTGCAGGAGCTGCAGTACACAGTTTCGGGCGGTACGAAGGTGATCTCAGGAGTGAGTCTCAGCCCTGGGAGTTCTAGAGGTTATCTCAGGGCTAGCCTCCGATGCAAACAAGAAACTGCAAGGATTAAAGGCTCAGCCCCTAGAAAATCTCCTGTTGGCAAGTTTCCAGCAAAGGCAGGAGCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

71

Amino Acids

7.3

Weight (kDa)

10.45

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	54
AfaI	GTAC	2 cut(s)	41, 58
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	2 cut(s)	34, 206
AluI	AGCT	2 cut(s)	34, 206
Alw26I	GTCTC	1 cut(s)	86
AlwNI	CAGNNNCTG	2 cut(s)	34, 206
ApeKI	GCWGC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	76
AsuNHI	GCTAGC	1 cut(s)	116
BaeI	ACNNNNGTAYC	2 cut(s)	48, 81
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	3 cut(s)	99, 117, 165
BfmI	CTRYAG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	35
BlpI	GCTNAGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	116
BmtI	GCTAGC	1 cut(s)	120
BplI	GAGNNNNNCTC	4 cut(s)	66, 98, 93, 125
Bpu1102I	GCTNAGC	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	88, 89
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	88, 89
BseGI	GGATG	2 cut(s)	13, 17
BseMII	CTCAG	4 cut(s)	84, 97, 124, 171
BseXI	GCAGC	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	66
Bsp1720I	GCTNAGC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	54
BspCNI	CTCAG	4 cut(s)	83, 96, 123, 170
BspMAI	CTGCAG	1 cut(s)	39
BspOI	GCTAGC	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	88, 89
BssMI	GATC	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	4 cut(s)	70, 83, 110, 157
BstF5I	GGATG	2 cut(s)	13, 17
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 126
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	13, 17
Cac8I	GCNNGC	1 cut(s)	118
CaiI	CAGNNNCTG	2 cut(s)	34, 206
Csp6I	GTAC	2 cut(s)	40, 57
CviJI	RGCY	8 cut(s)	20, 34, 87, 116, 120, 156, 161, 206
CviKI_1	RGCY	8 cut(s)	20, 34, 87, 116, 120, 156, 161, 206
CviQI	GTAC	2 cut(s)	40, 57
DdeI	CTNAG	4 cut(s)	70, 83, 110, 157
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	88
FaiI	YATR	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	2 cut(s)	20, 24
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	3 cut(s)	99, 117, 165
GluI	GCNGC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	79
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	2 cut(s)	72, 99
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	4 cut(s)	28, 37, 129, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 126
HpyF3I	CTNAG	4 cut(s)	70, 83, 110, 157
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	31, 203
LpnPI	CCDG	8 cut(s)	14, 57, 75, 97, 102, 186, 189, 204
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	3 cut(s)	99, 117, 165
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	2 cut(s)	95, 131
MseI	TTAA	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	34, 126
NdeII	GATC	1 cut(s)	66
NheI	GCTAGC	1 cut(s)	116
PasI	CCCWGGG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	39
PstNI	CAGNNNCTG	2 cut(s)	34, 206
RsaI	GTAC	2 cut(s)	41, 58
RsaNI	GTAC	2 cut(s)	40, 57
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	90
SetI	ASST	4 cut(s)	36, 66, 106, 208
SfaNI	GCATC	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	35
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	3 cut(s)	99, 117, 165
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	46
TatI	WGTACW	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseI	GCWGC	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	98
XspI	CTAG	3 cut(s)	99, 117, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.