Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Reverse (-)

4072221 .. 4074291

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G004820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCAGAGAATGTCACTGCCGGCAATGCTGCTCAGCGAAACAGTCGGAGAAATTCTTCATTCAAGTCAATTTGCAAGAGAAATAGTAGCATAGTCCCCAAGAAAACCACCATAGAAGACCCCAAAACCCCAATGACCCAACAGAAAAAACAGAGACCACCCCCTGAAAACACAGAGCTCAGGGCCAGAAGAAAGAAGGAGAAGCACAACAAATCTCAATCCAACCGATCAGAAGCTGGCTCACCGGTGCTCCAACGAGCCCGGTCCCGAATTAACTTCAAGGTTTCGCCTCCTAAGAAGAGAGAGATAGAGAAAGAAAATACCAGATACTTAGCAAACAGAGTGTCTCCCAAAAACAGACCATGGGCTAAAAAGAGTGTATTGTTTCCCAACCCTTTGTTTTCGGCCACAGATACTTCACCTCAGCAAAAGAAGTTTTGTAGAACAAGGTCACCAATGATTGGAAGAAGTACTAACAATACTAAACCTCAGACTCAGCAGATTCAGACTCCACACAAGTTCTTGATCAAGTCTCCAGCTTCGGCTTCAAAGTTCCAGGTCAAGATTAAGAGCCCTCCATTGGTTTCTTCTCTTTCGCCAACTAAGGCCAAGAAGTCTCCGAAGAAATCTGCTGTCTCGAAACTGCGGCGGTCATTTTCTCCGTCGAGATTGGCTACTAGATTGGTGTCTCTGTCTCCATTGAAGAGCAGGAAGAGTGTGCAGAAGAGTGAAGGACTAATAATGCCGGGTTTGAAACAGCGTCCAACTTCCTCAATGCCACTGGGAGTTTCAGCTCGGAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

30.13

Weight (kDa)

11.87

Isoelectric Point (pI)

77.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	461
AciI	CCGC	2 cut(s)	646, 649
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	2 cut(s)	461, 580
AgeI	ACCGGT	1 cut(s)	244
AgsI	TTSAA	5 cut(s)	64, 280, 549, 703, 754
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	4 cut(s)	178, 236, 539, 794
AluI	AGCT	4 cut(s)	178, 236, 539, 794
Alw21I	GWGCWC	2 cut(s)	180, 252
Alw26I	GTCTC	7 cut(s)	148, 351, 537, 621, 640, 693, 699
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	183, 405, 606
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	52
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AsiGI	ACCGGT	1 cut(s)	244
Asp700I	GAANNNNTTC	1 cut(s)	55
AspS9I	GGNCC	2 cut(s)	183, 264
AsuC2I	CCSGG	2 cut(s)	262, 747
AsuHPI	GGTGA	3 cut(s)	234, 411, 444
AvaII	GGWCC	1 cut(s)	264
BanII	GRGCYC	3 cut(s)	180, 262, 575
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	2 cut(s)	180, 252
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	557
BclI	TGATCA	1 cut(s)	525
BcnI	CCSGG	2 cut(s)	262, 747
BcoDI	GTCTC	7 cut(s)	148, 351, 537, 621, 640, 693, 699
BfaI	CTAG	1 cut(s)	678
BisI	GCNGC	2 cut(s)	30, 647
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	2 cut(s)	31, 648
BmcAI	AGTACT	1 cut(s)	472
Bme1390I	CCNGG	3 cut(s)	262, 557, 747
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	183, 264
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	3 cut(s)	262, 557, 747
BmrI	ACTGGG	1 cut(s)	791
BmuI	ACTGGG	1 cut(s)	791
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	2 cut(s)	179, 423
Bpu1102I	GCTNAGC	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	262, 747
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	461, 580
Bse118I	RCCGGY	2 cut(s)	20, 244
Bse1I	ACTGG	1 cut(s)	786
Bse3DI	GCAATG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	1 cut(s)	362
BseLI	CCNNNNNNNGG	2 cut(s)	461, 580
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	5 cut(s)	47, 193, 437, 503, 509
BseNI	ACTGG	1 cut(s)	786
BseXI	GCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	740
BshFI	GGCC	3 cut(s)	185, 407, 608
BshTI	ACCGGT	1 cut(s)	244
BsiHKAI	GWGCWC	2 cut(s)	180, 252
BsiSI	CCGG	4 cut(s)	21, 245, 262, 746
BslFI	GGGAC	2 cut(s)	80, 250
BslI	CCNNNNNNNGG	2 cut(s)	461, 580
BsmAI	GTCTC	7 cut(s)	148, 351, 537, 621, 640, 693, 699
BsmFI	GGGAC	2 cut(s)	80, 250
BsnI	GGCC	3 cut(s)	185, 407, 608
Bso31I	GGTCTC	1 cut(s)	148
Bsp1286I	GDGCHC	4 cut(s)	180, 252, 262, 575
Bsp143I	GATC	2 cut(s)	227, 525
Bsp1720I	GCTNAGC	1 cut(s)	33
Bsp19I	CCATGG	1 cut(s)	362
BspACI	CCGC	2 cut(s)	646, 649
BspANI	GGCC	3 cut(s)	185, 407, 608
BspCNI	CTCAG	5 cut(s)	46, 192, 436, 502, 508
BspLI	GGNNCC	1 cut(s)	266
BspQI	GCTCTTC	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	31
BsrFI	RCCGGY	2 cut(s)	20, 244
BsrI	ACTGG	1 cut(s)	786
BssAI	RCCGGY	2 cut(s)	20, 244
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	2 cut(s)	227, 525
BssT1I	CCWWGG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	4 cut(s)	293, 698, 707, 719
BstC8I	GCNNGC	2 cut(s)	22, 238
BstDEI	CTNAG	8 cut(s)	33, 179, 294, 331, 423, 489, 495, 603
BstDSI	CCRYGG	1 cut(s)	362
BstEII	GGTNACC	1 cut(s)	450
BstKTI	GATC	2 cut(s)	230, 528
BstMAI	GTCTC	7 cut(s)	148, 351, 537, 621, 640, 693, 699
BstMBI	GATC	2 cut(s)	227, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	557
BstPI	GGTNACC	1 cut(s)	450
BstSCI	CCNGG	3 cut(s)	260, 555, 745
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	185, 407, 608
BtgI	CCRYGG	1 cut(s)	362
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	15, 779
Cac8I	GCNNGC	2 cut(s)	22, 238
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr10I	RCCGGY	2 cut(s)	20, 244
Cfr13I	GGNCC	2 cut(s)	183, 264
CseI	GACGC	1 cut(s)	749
Csp6I	GTAC	1 cut(s)	471
CspAI	ACCGGT	1 cut(s)	244
CviAII	CATG	1 cut(s)	363
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	8 cut(s)	33, 179, 294, 331, 423, 489, 495, 603
DpnI	GATC	2 cut(s)	229, 527
DpnII	GATC	2 cut(s)	227, 525
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	4 cut(s)	293, 698, 707, 719
EarI	CTCTTC	4 cut(s)	293, 698, 707, 719
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	362
Eco24I	GRGCYC	3 cut(s)	180, 262, 575
Eco31I	GGTCTC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	178
Eco91I	GGTNACC	1 cut(s)	450
EcoICRI	GAGCTC	1 cut(s)	178
EcoO65I	GGTNACC	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	362
EcoT38I	GRGCYC	3 cut(s)	180, 262, 575
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	1 cut(s)	366
FaiI	YATR	3 cut(s)	92, 113, 364
FaqI	GGGAC	2 cut(s)	80, 250
FatI	CATG	1 cut(s)	362
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	2 cut(s)	30, 647
FriOI	GRGCYC	3 cut(s)	180, 262, 575
Fsp4HI	GCNGC	2 cut(s)	30, 647
FspBI	CTAG	1 cut(s)	678
GluI	GCNGC	2 cut(s)	30, 647
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	3 cut(s)	185, 407, 608
HapII	CCGG	4 cut(s)	21, 245, 262, 746
HgaI	GACGC	1 cut(s)	749
Hin1II	CATG	1 cut(s)	366
HinfI	GANTC	3 cut(s)	493, 502, 508
HpaII	CCGG	4 cut(s)	21, 245, 262, 746
HphI	GGTGA	3 cut(s)	234, 411, 444
Hpy188I	TCNGA	6 cut(s)	48, 232, 492, 507, 621, 798
Hpy188III	TCNNGA	5 cut(s)	267, 523, 562, 637, 666
Hpy99I	CGWCG	1 cut(s)	667
HpyAV	CCTTC	2 cut(s)	190, 725
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	75, 721
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	8 cut(s)	33, 179, 294, 331, 423, 489, 495, 603
Hsp92II	CATG	1 cut(s)	366
KroI	GCCGGC	1 cut(s)	20
KroNI	GCCGGC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	2 cut(s)	227, 525
LguI	GCTCTTC	1 cut(s)	698
LmnI	GCTCC	1 cut(s)	255
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	678
MaeIII	GTNAC	2 cut(s)	13, 450
MalI	GATC	2 cut(s)	229, 527
MboI	GATC	2 cut(s)	227, 525
MhlI	GDGCHC	4 cut(s)	180, 252, 262, 575
MluCI	AATT	4 cut(s)	52, 69, 270, 802
MlyI	GAGTC	2 cut(s)	487, 502
MmeI	TCCRAC	4 cut(s)	26, 246, 277, 788
MnlI	CCTC	6 cut(s)	300, 432, 498, 585, 781, 792
MroNI	GCCGGC	1 cut(s)	20
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	3 cut(s)	273, 567, 805
MspI	CCGG	4 cut(s)	21, 245, 262, 746
MspR9I	CCNGG	3 cut(s)	262, 557, 747
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	1 cut(s)	26
NaeI	GCCGGC	1 cut(s)	22
NciI	CCSGG	2 cut(s)	262, 747
NcoI	CCATGG	1 cut(s)	362
NdeII	GATC	2 cut(s)	227, 525
NgoMIV	GCCGGC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	366
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	2 cut(s)	13, 450
PciSI	GCTCTTC	1 cut(s)	698
PdiI	GCCGGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	502
PflMI	CCANNNNNTGG	1 cut(s)	461
PinAI	ACCGGT	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	31, 648
PleI	GAGTC	2 cut(s)	487, 502
PpsI	GAGTC	2 cut(s)	487, 502
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	555
PspEI	GGTNACC	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	183, 264
PstNI	CAGNNNCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	698
SaqAI	TTAA	3 cut(s)	273, 567, 805
SatI	GCNGC	2 cut(s)	30, 647
Sau3AI	GATC	2 cut(s)	227, 525
Sau96I	GGNCC	2 cut(s)	183, 264
ScaI	AGTACT	1 cut(s)	472
SchI	GAGTC	2 cut(s)	487, 502
ScrFI	CCNGG	3 cut(s)	262, 557, 747
SduI	GDGCHC	4 cut(s)	180, 252, 262, 575
SetI	ASST	9 cut(s)	180, 238, 285, 424, 452, 490, 541, 561, 796
SgrAI	CRCCGGYG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	264
Sse9I	AATT	4 cut(s)	52, 69, 270, 802
SsiI	CCGC	2 cut(s)	646, 649
SspMI	CTAG	1 cut(s)	678
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	3 cut(s)	260, 555, 745
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	638, 665
TasI	AATT	4 cut(s)	52, 69, 270, 802
TatI	WGTACW	1 cut(s)	470
TauI	GCSGC	1 cut(s)	649
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	3 cut(s)	273, 567, 805
Tru9I	TTAA	3 cut(s)	273, 567, 805
TscAI	CASTG	2 cut(s)	22, 786
TseFI	GTSAC	2 cut(s)	13, 450
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	2 cut(s)	13, 450
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	2 cut(s)	22, 786
Van91I	CCANNNNNTGG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	1 cut(s)	678
ZrmI	AGTACT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.