Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Forward (+)

20300665 .. 20302706

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAGTGCAGCTGTACAATAACTAAAAAGAGATCGATCTTGAAGACCCACTTCCCACTGAGAGTTGCTGTGTGTGTGTGTGTGTGTGTCTTAAGTAATAAAATGGTTGCGAGAACCCCACCAAAGCAGAGGAAAATGGTAGCCCCTCTCAATCCTCTTCTCCTCAGGGAAACAGTGAAGAAGGTGGATAGATGCATGGCTCGGTTGCAGGAGCTGCAGTACACAGTTTCGGGCGGTACGAAGGTGATTTCTGGAGTCAGTCTCAGCCCAAGGAGCACTCGAGGTTATCTCAGGACTAGCCTCCGATGTAAACAAGAAACTGCGAGGATTAAAGGTTCAGCCCCTAGAAAATCTCCTGTTGGCAAGTTTCCTGCAAATGCAGGAGGGGAGTGGCAGAGAATGTCGCTGCCTGCAATGCTGGTCGACGAAACAGTTGGAGAAATCCTACAAGCAAGCAAGTTTGCAAGAGAAATAATAGCAGCAGTTGGTAAAAAACCCCAGAAAACCACTTCAGAAGACCCCAAAACCCCAATGACACAACAGAGGAAACAGAGGCAAAACCCCGAAAACACAGAGCTCAGAGCCAGAAGAAAGAAGGAGAAGCACAACAAGTCTCAATCCACTCGATCAGAATCTGGTTCACCGATACTCCAACGGGCTCGTTCCAGGATCAATTTCAAGGTCTCACCTCCACACAAGAGGGAAATGCAGAAAGAAAACAACAGATACTTGGCAAATCGAGTGTCTCCGAAAAATAGGCCATGGGCTAAAAAAAGTGTGTTGTTTCCCAACCCTTTGTTTTCGGCTTCGGATTCTTCTCAGCAGCAGAAGTTCTGCAGAACAAGATCACCAGTCATTGGTAGAAATGATGGCAGTAATGATAGGCCACGGATTCATACTCCGCACAAGTTCTTGATCAAGTCCCCGCCTTCTGCTTCGAAGTTTCCTTCATCTTCCAAGTTTCAGATCAAGATCAGGAGCCCTCCTTTGGTTTCTTCTCTGTCTCCAACGAAAGCCAAGAAGTCACCAAAGATGTCAACTGCCTCAAAACTTCGCAGGTCATTTTCTCCTTCGAGATTGGCAACTAGGTTGGTGTCTCCATTGAAGAGCAGAAAGAGTTTGCAGAAGAGTAGCGAGGGAGGACTAGTAATGCATGGTTTGAAACAGCGTCCAACGTCCTCGATTCCAATGGGAATTTCAGCTCGGAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

405

Amino Acids

45.25

Weight (kDa)

11.47

Isoelectric Point (pI)

74.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1047
AccB7I	CCANNNNNTGG	1 cut(s)	857
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	3 cut(s)	234, 902, 926
AclWI	GGATC	1 cut(s)	677
AcsI	RAATTY	2 cut(s)	1194, 1209
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	3 cut(s)	16, 221, 238
AfiI	CCNNNNNNNGG	2 cut(s)	857, 988
AflII	CTTAAG	1 cut(s)	91
AgsI	TTSAA	4 cut(s)	43, 679, 1105, 1162
AhlI	ACTAGT	1 cut(s)	1144
AjnI	CCWGG	1 cut(s)	665
AjuI	GAANNNNNNNTTGG	2 cut(s)	1180, 1212
AloI	GAACNNNNNNTCC	2 cut(s)	319, 351
AluBI	AGCT	4 cut(s)	12, 214, 577, 1202
AluI	AGCT	4 cut(s)	12, 214, 577, 1202
Alw21I	GWGCWC	2 cut(s)	278, 579
Alw26I	GTCTC	6 cut(s)	266, 618, 688, 750, 1008, 1101
AlwI	GGATC	1 cut(s)	677
AlwNI	CAGNNNCTG	2 cut(s)	214, 635
Ama87I	CYCGRG	1 cut(s)	279
AoxI	GGCC	2 cut(s)	758, 884
ApeKI	GCWGC	5 cut(s)	9, 214, 406, 479, 823
ApoI	RAATTY	2 cut(s)	1194, 1209
ArsI	GACNNNNNNTTYG	2 cut(s)	728, 760
AsuHPI	GGTGA	5 cut(s)	256, 633, 678, 840, 1017
AsuII	TTCGAA	1 cut(s)	938
AvaI	CYCGRG	1 cut(s)	279
AxyI	CCTNAGG	1 cut(s)	164
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BanII	GRGCYC	3 cut(s)	579, 661, 983
BbsI	GAAGAC	2 cut(s)	50, 522
Bbv12I	GWGCWC	2 cut(s)	278, 579
BbvI	GCAGC	5 cut(s)	21, 201, 393, 491, 835
BccI	CCATC	1 cut(s)	863
BciT130I	CCWGG	1 cut(s)	667
BclI	TGATCA	1 cut(s)	915
BcoDI	GTCTC	6 cut(s)	266, 618, 688, 750, 1008, 1101
BcuI	ACTAGT	1 cut(s)	1144
BfaI	CTAG	4 cut(s)	297, 345, 1086, 1145
BfmI	CTRYAG	2 cut(s)	215, 835
BfrI	CTTAAG	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	1047
BisI	GCNGC	5 cut(s)	10, 215, 407, 480, 824
BlsI	GCNGC	5 cut(s)	11, 216, 408, 481, 825
Bme1390I	CCNGG	1 cut(s)	667
BmeT110I	CYCGRG	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	980
BmrFI	CCNGG	1 cut(s)	667
BmsI	GCATC	1 cut(s)	182
BpiI	GAAGAC	2 cut(s)	50, 522
BplI	GAGNNNNNCTC	4 cut(s)	246, 278, 273, 305
BpmI	CTGGAG	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	938
Bsa29I	ATCGAT	1 cut(s)	35
BsaBI	GATNNNNATC	2 cut(s)	631, 971
BsaI	GGTCTC	1 cut(s)	688
BsaJI	CCNNGG	3 cut(s)	269, 761, 887
BsaXI	ACNNNNNCTCC	6 cut(s)	203, 233, 633, 663, 1131, 1161
Bsc4I	CCNNNNNNNGG	2 cut(s)	857, 988
Bse1I	ACTGG	1 cut(s)	851
Bse21I	CCTNAGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	420
Bse8I	GATNNNNATC	2 cut(s)	631, 971
BseBI	CCWGG	1 cut(s)	667
BseCI	ATCGAT	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	269, 761, 887
BseJI	GATNNNNATC	2 cut(s)	631, 971
BseLI	CCNNNNNNNGG	2 cut(s)	857, 988
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	6 cut(s)	50, 178, 277, 304, 592, 833
BseNI	ACTGG	1 cut(s)	851
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	5 cut(s)	21, 201, 393, 491, 835
BsgI	GTGCAG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	760, 886
BshVI	ATCGAT	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	278, 579
BsiHKCI	CYCGRG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	907
BslI	CCNNNNNNNGG	2 cut(s)	857, 988
BsmAI	GTCTC	6 cut(s)	266, 618, 688, 750, 1008, 1101
BsmFI	GGGAC	1 cut(s)	907
BsnI	GGCC	2 cut(s)	760, 886
Bso31I	GGTCTC	1 cut(s)	688
BsoBI	CYCGRG	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	938
Bsp1286I	GDGCHC	4 cut(s)	278, 579, 661, 983
Bsp1407I	TGTACA	1 cut(s)	14
Bsp143I	GATC	8 cut(s)	32, 36, 626, 669, 845, 915, 966, 972
Bsp19I	CCATGG	1 cut(s)	761
BspACI	CCGC	3 cut(s)	234, 902, 926
BspANI	GGCC	2 cut(s)	760, 886
BspCNI	CTCAG	6 cut(s)	51, 177, 276, 303, 591, 832
BspDI	ATCGAT	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	980
BspMAI	CTGCAG	2 cut(s)	219, 839
BspMI	ACCTGC	1 cut(s)	1047
BspPI	GGATC	1 cut(s)	677
BspQI	GCTCTTC	1 cut(s)	1100
BspT104I	TTCGAA	1 cut(s)	938
BspTI	CTTAAG	1 cut(s)	91
BspTNI	GGTCTC	1 cut(s)	688
BsrDI	GCAATG	1 cut(s)	420
BsrGI	TGTACA	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	851
BssECI	CCNNGG	3 cut(s)	269, 761, 887
BssMI	GATC	8 cut(s)	32, 36, 626, 669, 845, 915, 966, 972
BssT1I	CCWWGG	2 cut(s)	269, 761
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	3 cut(s)	175, 226, 433
Bst6I	CTCTTC	3 cut(s)	162, 1100, 1121
BstAFI	CTTAAG	1 cut(s)	91
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstAUI	TGTACA	1 cut(s)	14
BstBI	TTCGAA	1 cut(s)	938
BstC8I	GCNNGC	2 cut(s)	411, 454
BstDEI	CTNAG	6 cut(s)	59, 164, 263, 290, 578, 819
BstDSI	CCRYGG	2 cut(s)	761, 887
BstKTI	GATC	8 cut(s)	35, 39, 629, 672, 848, 918, 969, 975
BstMAI	GTCTC	6 cut(s)	266, 618, 688, 750, 1008, 1101
BstMBI	GATC	8 cut(s)	32, 36, 626, 669, 845, 915, 966, 972
BstMWI	GCNNNNNNNGC	3 cut(s)	214, 273, 415
BstNI	CCWGG	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	665
BstSFI	CTRYAG	2 cut(s)	215, 835
BstV1I	GCAGC	5 cut(s)	21, 201, 393, 491, 835
BstV2I	GAAGAC	2 cut(s)	50, 522
Bsu15I	ATCGAT	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	760, 886
BsuTUI	ATCGAT	1 cut(s)	35
BtgI	CCRYGG	2 cut(s)	761, 887
BtsIMutI	CAGTG	2 cut(s)	56, 180
BveI	ACCTGC	1 cut(s)	1047
Cac8I	GCNNGC	2 cut(s)	411, 454
CaiI	CAGNNNCTG	2 cut(s)	214, 635
ClaI	ATCGAT	1 cut(s)	35
CseI	GACGC	1 cut(s)	1157
Csp6I	GTAC	3 cut(s)	15, 220, 237
CviAII	CATG	3 cut(s)	196, 762, 1154
CviQI	GTAC	3 cut(s)	15, 220, 237
DdeI	CTNAG	6 cut(s)	59, 164, 263, 290, 578, 819
DpnI	GATC	8 cut(s)	34, 38, 628, 671, 847, 917, 968, 974
DpnII	GATC	8 cut(s)	32, 36, 626, 669, 845, 915, 966, 972
Eam1104I	CTCTTC	3 cut(s)	162, 1100, 1121
EarI	CTCTTC	3 cut(s)	162, 1100, 1121
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	2 cut(s)	269, 761
Eco24I	GRGCYC	3 cut(s)	579, 661, 983
Eco31I	GGTCTC	1 cut(s)	688
Eco53kI	GAGCTC	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	495
Eco81I	CCTNAGG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	665
EcoT14I	CCWWGG	2 cut(s)	269, 761
EcoT22I	ATGCAT	2 cut(s)	197, 1155
EcoT38I	GRGCYC	3 cut(s)	579, 661, 983
ErhI	CCWWGG	2 cut(s)	269, 761
FaeI	CATG	3 cut(s)	199, 765, 1157
FaiI	YATR	4 cut(s)	197, 763, 897, 1155
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	907
FatI	CATG	3 cut(s)	195, 761, 1153
FauI	CCCGC	1 cut(s)	933
FbaI	TGATCA	1 cut(s)	915
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	5 cut(s)	10, 215, 407, 480, 824
FriOI	GRGCYC	3 cut(s)	579, 661, 983
Fsp4HI	GCNGC	5 cut(s)	10, 215, 407, 480, 824
FspBI	CTAG	4 cut(s)	297, 345, 1086, 1145
GluI	GCNGC	5 cut(s)	10, 215, 407, 480, 824
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	760, 886
HgaI	GACGC	1 cut(s)	1157
Hin1II	CATG	3 cut(s)	199, 765, 1157
HincII	GTYRAC	2 cut(s)	424, 1038
HindII	GTYRAC	2 cut(s)	424, 1038
HinfI	GANTC	5 cut(s)	255, 632, 812, 892, 1183
HphI	GGTGA	5 cut(s)	256, 633, 678, 840, 1017
Hpy166II	GTNNAC	5 cut(s)	222, 311, 424, 641, 1038
Hpy188I	TCNGA	8 cut(s)	305, 514, 581, 631, 750, 811, 966, 1206
Hpy188III	TCNNGA	7 cut(s)	40, 252, 292, 913, 970, 976, 1074
Hpy8I	GTNNAC	5 cut(s)	222, 311, 424, 641, 1038
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	6 cut(s)	175, 235, 589, 939, 957, 1080
HpyCH4III	ACNGT	3 cut(s)	175, 226, 433
HpyCH4IV	ACGT	1 cut(s)	1175
HpyF10VI	GCNNNNNNNGC	3 cut(s)	214, 273, 415
HpyF3I	CTNAG	6 cut(s)	59, 164, 263, 290, 578, 819
HpySE526I	ACGT	1 cut(s)	1175
Hsp92II	CATG	3 cut(s)	199, 765, 1157
Ksp22I	TGATCA	1 cut(s)	915
Kzo9I	GATC	8 cut(s)	32, 36, 626, 669, 845, 915, 966, 972
LguI	GCTCTTC	1 cut(s)	1100
LmnI	GCTCC	3 cut(s)	211, 273, 978
Lsp1109I	GCAGC	5 cut(s)	21, 201, 393, 491, 835
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	4 cut(s)	297, 345, 1086, 1145
MaeII	ACGT	1 cut(s)	1175
MaeIII	GTNAC	1 cut(s)	1023
MalI	GATC	8 cut(s)	34, 38, 628, 671, 847, 917, 968, 974
MboI	GATC	8 cut(s)	32, 36, 626, 669, 845, 915, 966, 972
MhlI	GDGCHC	4 cut(s)	278, 579, 661, 983
MluCI	AATT	3 cut(s)	673, 1194, 1209
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	4 cut(s)	415, 676, 1031, 1196
Mph1103I	ATGCAT	2 cut(s)	197, 1155
MseI	TTAA	2 cut(s)	92, 330
MspA1I	CMGCKG	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	667
MvaI	CCWGG	1 cut(s)	667
MwoI	GCNNNNNNNGC	3 cut(s)	214, 273, 415
NcoI	CCATGG	1 cut(s)	761
NdeII	GATC	8 cut(s)	32, 36, 626, 669, 845, 915, 966, 972
NlaIII	CATG	3 cut(s)	199, 765, 1157
NlaIV	GGNNCC	1 cut(s)	980
NmuCI	GTSAC	1 cut(s)	1023
NsiI	ATGCAT	2 cut(s)	197, 1155
NspV	TTCGAA	1 cut(s)	938
PaeR7I	CTCGAG	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	1100
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PfeI	GAWTC	4 cut(s)	632, 812, 892, 1183
PflMI	CCANNNNNTGG	1 cut(s)	857
PfoI	TCCNGGA	1 cut(s)	665
PkrI	GCNGC	5 cut(s)	11, 216, 408, 481, 825
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	665
PspN4I	GGNNCC	1 cut(s)	980
PspXI	VCTCGAGB	1 cut(s)	279
PstI	CTGCAG	2 cut(s)	219, 839
PstNI	CAGNNNCTG	2 cut(s)	214, 635
PvuII	CAGCTG	1 cut(s)	12
RsaI	GTAC	3 cut(s)	16, 221, 238
RsaNI	GTAC	3 cut(s)	15, 220, 237
SacI	GAGCTC	1 cut(s)	579
SalI	GTCGAC	1 cut(s)	422
SapI	GCTCTTC	1 cut(s)	1100
SaqAI	TTAA	2 cut(s)	92, 330
SatI	GCNGC	5 cut(s)	10, 215, 407, 480, 824
Sau3AI	GATC	8 cut(s)	32, 36, 626, 669, 845, 915, 966, 972
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	667
SduI	GDGCHC	4 cut(s)	278, 579, 661, 983
SfaNI	GCATC	1 cut(s)	182
SfcI	CTRYAG	2 cut(s)	215, 835
Sfr274I	CTCGAG	1 cut(s)	279
SfuI	TTCGAA	1 cut(s)	938
SlaI	CTCGAG	1 cut(s)	279
SmlI	CTYRAG	2 cut(s)	91, 279
SmoI	CTYRAG	2 cut(s)	91, 279
SpeI	ACTAGT	1 cut(s)	1144
Sse9I	AATT	3 cut(s)	673, 1194, 1209
SsiI	CCGC	3 cut(s)	234, 902, 926
SspMI	CTAG	4 cut(s)	297, 345, 1086, 1145
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	665
StyI	CCWWGG	2 cut(s)	269, 761
TaaI	ACNGT	3 cut(s)	175, 226, 433
TaiI	ACGT	1 cut(s)	1178
TaqI	TCGA	8 cut(s)	35, 280, 423, 625, 739, 938, 1073, 1181
TasI	AATT	3 cut(s)	673, 1194, 1209
TatI	WGTACW	2 cut(s)	14, 219
TfiI	GAWTC	4 cut(s)	632, 812, 892, 1183
Tru1I	TTAA	2 cut(s)	92, 330
Tru9I	TTAA	2 cut(s)	92, 330
TscAI	CASTG	2 cut(s)	63, 180
TseFI	GTSAC	1 cut(s)	1023
TseI	GCWGC	5 cut(s)	9, 214, 406, 479, 823
Tsp45I	GTSAC	1 cut(s)	1023
TspDTI	ATGAA	2 cut(s)	884, 939
TspGWI	ACGGA	1 cut(s)	904
TspRI	CASTG	2 cut(s)	63, 180
Van91I	CCANNNNNTGG	1 cut(s)	857
Vha464I	CTTAAG	1 cut(s)	91
XapI	RAATTY	2 cut(s)	1194, 1209
XhoI	CTCGAG	1 cut(s)	279
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	4 cut(s)	297, 345, 1086, 1145
Zsp2I	ATGCAT	2 cut(s)	197, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.