Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Forward (+)

29665111 .. 29667373

Gene Structure 2263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1219500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGTTGCAAAAACCCCACCAAAGCAGAGGAAAATGGTAGCCCCTCTCAATCCTCTTCTCCTCAGAGAAACAGTGAAGAAGGTGGATAGATGTATGGCTCGGTTGCAGGAGCTGCAGTACACAGTTTCGGGCGGTGCGAAGGTGATCTCAGGAGTAAGTCTCAGCCCTCGGAGTACTAGAGGTTATCTCAGGACTAGCCTCCGATGCAAACAAGAAACTGCAAGGATTAAAGGCTCAGCCCCTAGAAAATCTCCTGTTGGCAAGTTTCCAGCAAAGGCAGGAGGGGAGTGGCAGAGAATGTCCTTGCCGGCAATGCTGGTCGGTGAAACCGTCGGAGAAATTCTACAAGCAAGCCAATTTGCAAGAGAAATAATAGCAGCAGTTGGCAACAAAACAAAGAAAACCACTTCAGAAGACCCCAAAACCCCAATGACACAACAAAGGAAACAAAGGCAGAGCCCTGAAAACACAGAGCTCAGGGCCAGGAGAAAGAAGGAGAAGCACAACAAGCCTCCGTCCACTCGATCAGAATCCGGTTCCCCGGTACTGCAACGGGCTCGTTCCCGGATCAATTTCAAGGTCTCACCTCCACACAAGAGAGAAATGGAGAAAGAAAACAACAGATACGTGGCAAACAGAGTATCTCCGAAAAATAGGCCATGGGCTAAAAAAAGTGTCTTGTTTCCCAACCCTTTGTTTTCGGCTTCAAATTCTTCTCAGCAGCAGAAGTTCTGCAGAACAAGATCACCGGTCATTGGCAGAAACGATTGTAACAATGATAGGCCAAGGATTCAGACTCCGCACAAGTTCTTGATCAAGTCCCCGCCTTCTGCTTCGAAGTTTCCTTCACCTTCCAAGTTTCAGATCAAGATCAAGAGCCCTCCATTGGTTTCTTCTCTGTCTCCAACGAAAGCCAAGAAGTCACCGAAGATGTCAACTGCTTCAAAACTTCGCAGGTCATTTTCGCCGTCAAGATTGGCAACTAGGTTGGTGTCACCATTGAAGAGCAGAAAGAGTGTGCAGAAGAGTAGTGATGGAGCACTATTAATGCATGGTTTGAAACAGCGTCCGACTCCCTCAGTGCCATTGGGACTTTCAGCTCGGAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

371

Amino Acids

41.29

Weight (kDa)

11.61

Isoelectric Point (pI)

73.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	945
AciI	CCGC	3 cut(s)	132, 800, 824
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	3 cut(s)	339, 709, 1107
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	3 cut(s)	119, 175, 546
AfiI	CCNNNNNNNGG	2 cut(s)	755, 886
AgeI	ACCGGT	1 cut(s)	748
AgsI	TTSAA	5 cut(s)	577, 708, 945, 1003, 1060
AjnI	CCWGG	1 cut(s)	482
AluBI	AGCT	3 cut(s)	112, 475, 1100
AluI	AGCT	3 cut(s)	112, 475, 1100
Alw21I	GWGCWC	2 cut(s)	477, 1042
Alw26I	GTCTC	3 cut(s)	164, 586, 906
AlwI	GGATC	1 cut(s)	575
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	3 cut(s)	480, 656, 782
ApeKI	GCWGC	3 cut(s)	112, 377, 721
ApoI	RAATTY	3 cut(s)	339, 709, 1107
AseI	ATTAAT	1 cut(s)	1046
AsiGI	ACCGGT	1 cut(s)	748
AspS9I	GGNCC	1 cut(s)	480
AsuC2I	CCSGG	2 cut(s)	542, 565
AsuHPI	GGTGA	7 cut(s)	154, 335, 576, 738, 840, 915, 987
AsuII	TTCGAA	1 cut(s)	836
BanII	GRGCYC	4 cut(s)	461, 477, 559, 881
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	477, 1042
BbvI	GCAGC	3 cut(s)	99, 389, 733
BccI	CCATC	1 cut(s)	1028
BceAI	ACGGC	1 cut(s)	952
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciT130I	CCWGG	1 cut(s)	484
BclI	TGATCA	1 cut(s)	813
BcnI	CCSGG	2 cut(s)	542, 565
BcoDI	GTCTC	3 cut(s)	164, 586, 906
BfaI	CTAG	4 cut(s)	177, 195, 243, 984
BfmI	CTRYAG	2 cut(s)	113, 733
BfuAI	ACCTGC	1 cut(s)	945
BisI	GCNGC	3 cut(s)	113, 378, 722
BlpI	GCTNAGC	1 cut(s)	235
BlsI	GCNGC	3 cut(s)	114, 379, 723
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	3 cut(s)	484, 542, 565
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	1 cut(s)	538
BmrFI	CCNGG	3 cut(s)	484, 542, 565
BmsI	GCATC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	420
BplI	GAGNNNNNCTC	4 cut(s)	144, 176, 171, 203
Bpu10I	CCTNAGC	1 cut(s)	476
Bpu1102I	GCTNAGC	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	836
BpuMI	CCSGG	2 cut(s)	542, 565
BsaAI	YACGTR	1 cut(s)	628
BsaBI	GATNNNNATC	2 cut(s)	529, 869
BsaI	GGTCTC	1 cut(s)	586
BsaJI	CCNNGG	4 cut(s)	167, 540, 659, 785
BsaWI	WCCGGW	2 cut(s)	533, 748
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	755, 886
Bse118I	RCCGGY	2 cut(s)	307, 748
Bse3DI	GCAATG	1 cut(s)	318
Bse8I	GATNNNNATC	2 cut(s)	529, 869
BseBI	CCWGG	1 cut(s)	484
BseDI	CCNNGG	4 cut(s)	167, 540, 659, 785
BseJI	GATNNNNATC	2 cut(s)	529, 869
BseLI	CCNNNNNNNGG	2 cut(s)	755, 886
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	8 cut(s)	76, 162, 175, 202, 249, 490, 731, 1092
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	3 cut(s)	99, 389, 733
BsgI	GTGCAG	1 cut(s)	1040
BshFI	GGCC	3 cut(s)	482, 658, 784
BshTI	ACCGGT	1 cut(s)	748
BsiHKAI	GWGCWC	2 cut(s)	477, 1042
BsiSI	CCGG	5 cut(s)	308, 534, 542, 565, 749
BslFI	GGGAC	2 cut(s)	805, 1104
BslI	CCNNNNNNNGG	2 cut(s)	755, 886
BsmAI	GTCTC	3 cut(s)	164, 586, 906
BsmFI	GGGAC	2 cut(s)	805, 1104
BsnI	GGCC	3 cut(s)	482, 658, 784
Bso31I	GGTCTC	1 cut(s)	586
Bsp119I	TTCGAA	1 cut(s)	836
Bsp1286I	GDGCHC	5 cut(s)	461, 477, 559, 881, 1042
Bsp143I	GATC	7 cut(s)	144, 524, 567, 743, 813, 864, 870
Bsp1720I	GCTNAGC	1 cut(s)	235
Bsp19I	CCATGG	1 cut(s)	659
BspACI	CCGC	3 cut(s)	132, 800, 824
BspANI	GGCC	3 cut(s)	482, 658, 784
BspCNI	CTCAG	8 cut(s)	75, 161, 174, 201, 248, 489, 730, 1091
BspLI	GGNNCC	1 cut(s)	538
BspMAI	CTGCAG	2 cut(s)	117, 737
BspMI	ACCTGC	1 cut(s)	945
BspPI	GGATC	1 cut(s)	575
BspQI	GCTCTTC	1 cut(s)	998
BspT104I	TTCGAA	1 cut(s)	836
BspTNI	GGTCTC	1 cut(s)	586
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	2 cut(s)	307, 748
BssAI	RCCGGY	2 cut(s)	307, 748
BssECI	CCNNGG	4 cut(s)	167, 540, 659, 785
BssMI	GATC	7 cut(s)	144, 524, 567, 743, 813, 864, 870
BssT1I	CCWWGG	2 cut(s)	659, 785
Bst2UI	CCWGG	1 cut(s)	484
Bst4CI	ACNGT	3 cut(s)	73, 124, 331
Bst6I	CTCTTC	3 cut(s)	60, 998, 1019
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstBAI	YACGTR	1 cut(s)	628
BstBI	TTCGAA	1 cut(s)	836
BstC8I	GCNNGC	2 cut(s)	309, 352
BstDEI	CTNAG	8 cut(s)	62, 148, 161, 188, 235, 476, 717, 1078
BstDSI	CCRYGG	1 cut(s)	659
BstKTI	GATC	7 cut(s)	147, 527, 570, 746, 816, 867, 873
BstMAI	GTCTC	3 cut(s)	164, 586, 906
BstMBI	GATC	7 cut(s)	144, 524, 567, 743, 813, 864, 870
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 204, 313, 508
BstNI	CCWGG	1 cut(s)	484
BstSCI	CCNGG	3 cut(s)	482, 540, 563
BstSFI	CTRYAG	2 cut(s)	113, 733
BstV1I	GCAGC	3 cut(s)	99, 389, 733
BstV2I	GAAGAC	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	482, 658, 784
BtgI	CCRYGG	1 cut(s)	659
BtsIMutI	CAGTG	2 cut(s)	78, 1086
BveI	ACCTGC	1 cut(s)	945
Cac8I	GCNNGC	2 cut(s)	309, 352
CaiI	CAGNNNCTG	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	307, 748
Cfr13I	GGNCC	1 cut(s)	480
CseI	GACGC	1 cut(s)	1055
Csp6I	GTAC	3 cut(s)	118, 174, 545
CspAI	ACCGGT	1 cut(s)	748
CviAII	CATG	2 cut(s)	660, 1052
CviQI	GTAC	3 cut(s)	118, 174, 545
DdeI	CTNAG	8 cut(s)	62, 148, 161, 188, 235, 476, 717, 1078
DpnI	GATC	7 cut(s)	146, 526, 569, 745, 815, 866, 872
DpnII	GATC	7 cut(s)	144, 524, 567, 743, 813, 864, 870
Eam1104I	CTCTTC	3 cut(s)	60, 998, 1019
EarI	CTCTTC	3 cut(s)	60, 998, 1019
Ecl136II	GAGCTC	1 cut(s)	475
Eco130I	CCWWGG	2 cut(s)	659, 785
Eco24I	GRGCYC	4 cut(s)	461, 477, 559, 881
Eco31I	GGTCTC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	393
EcoICRI	GAGCTC	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	482
EcoT14I	CCWWGG	2 cut(s)	659, 785
EcoT22I	ATGCAT	1 cut(s)	1053
EcoT38I	GRGCYC	4 cut(s)	461, 477, 559, 881
ErhI	CCWWGG	2 cut(s)	659, 785
FaeI	CATG	2 cut(s)	663, 1055
FaiI	YATR	3 cut(s)	95, 661, 1053
FaqI	GGGAC	2 cut(s)	805, 1104
FatI	CATG	2 cut(s)	659, 1051
FauI	CCCGC	1 cut(s)	831
FbaI	TGATCA	1 cut(s)	813
Fnu4HI	GCNGC	3 cut(s)	113, 378, 722
FriOI	GRGCYC	4 cut(s)	461, 477, 559, 881
Fsp4HI	GCNGC	3 cut(s)	113, 378, 722
FspBI	CTAG	4 cut(s)	177, 195, 243, 984
GluI	GCNGC	3 cut(s)	113, 378, 722
HaeIII	GGCC	3 cut(s)	482, 658, 784
HapII	CCGG	5 cut(s)	308, 534, 542, 565, 749
HgaI	GACGC	1 cut(s)	1055
Hin1II	CATG	2 cut(s)	663, 1055
HincII	GTYRAC	1 cut(s)	936
HindII	GTYRAC	1 cut(s)	936
HinfI	GANTC	4 cut(s)	530, 790, 796, 1072
HpaII	CCGG	5 cut(s)	308, 534, 542, 565, 749
HphI	GGTGA	7 cut(s)	154, 335, 576, 738, 840, 915, 987
Hpy166II	GTNNAC	3 cut(s)	120, 519, 936
Hpy188III	TCNNGA	6 cut(s)	150, 190, 811, 868, 874, 972
Hpy8I	GTNNAC	3 cut(s)	120, 519, 936
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	6 cut(s)	73, 133, 487, 837, 855, 861
HpyCH4III	ACNGT	3 cut(s)	73, 124, 331
HpyCH4IV	ACGT	1 cut(s)	627
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 204, 313, 508
HpyF3I	CTNAG	8 cut(s)	62, 148, 161, 188, 235, 476, 717, 1078
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	2 cut(s)	663, 1055
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	813
Kzo9I	GATC	7 cut(s)	144, 524, 567, 743, 813, 864, 870
LguI	GCTCTTC	1 cut(s)	998
LmnI	GCTCC	2 cut(s)	109, 1037
Lsp1109I	GCAGC	3 cut(s)	99, 389, 733
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	4 cut(s)	177, 195, 243, 984
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	3 cut(s)	770, 921, 993
MalI	GATC	7 cut(s)	146, 526, 569, 745, 815, 866, 872
MboI	GATC	7 cut(s)	144, 524, 567, 743, 813, 864, 870
MboII	GAAGA	8 cut(s)	47, 88, 425, 705, 885, 940, 1015, 1036
MhlI	GDGCHC	5 cut(s)	461, 477, 559, 881, 1042
MluCI	AATT	5 cut(s)	339, 356, 571, 709, 1107
MlyI	GAGTC	2 cut(s)	790, 1066
MmeI	TCCRAC	3 cut(s)	313, 929, 1094
Mph1103I	ATGCAT	1 cut(s)	1053
MroNI	GCCGGC	1 cut(s)	307
MseI	TTAA	2 cut(s)	228, 1046
MspI	CCGG	5 cut(s)	308, 534, 542, 565, 749
MspR9I	CCNGG	3 cut(s)	484, 542, 565
MvaI	CCWGG	1 cut(s)	484
MwoI	GCNNNNNNNGC	4 cut(s)	112, 204, 313, 508
NaeI	GCCGGC	1 cut(s)	309
NciI	CCSGG	2 cut(s)	542, 565
NcoI	CCATGG	1 cut(s)	659
NdeII	GATC	7 cut(s)	144, 524, 567, 743, 813, 864, 870
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	663, 1055
NlaIV	GGNNCC	1 cut(s)	538
NmuCI	GTSAC	2 cut(s)	921, 993
NsiI	ATGCAT	1 cut(s)	1053
NspV	TTCGAA	1 cut(s)	836
PciSI	GCTCTTC	1 cut(s)	998
PcsI	WCGNNNNNNNCGW	2 cut(s)	134, 327
PdiI	GCCGGC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	530, 790
PfoI	TCCNGGA	1 cut(s)	563
PinAI	ACCGGT	1 cut(s)	748
PkrI	GCNGC	3 cut(s)	114, 379, 723
PleI	GAGTC	2 cut(s)	790, 1066
PpsI	GAGTC	2 cut(s)	790, 1066
Ppu21I	YACGTR	1 cut(s)	628
PshBI	ATTAAT	1 cut(s)	1046
Psp124BI	GAGCTC	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	482
PspN4I	GGNNCC	1 cut(s)	538
PspPI	GGNCC	1 cut(s)	480
PstI	CTGCAG	2 cut(s)	117, 737
PstNI	CAGNNNCTG	1 cut(s)	112
RsaI	GTAC	3 cut(s)	119, 175, 546
RsaNI	GTAC	3 cut(s)	118, 174, 545
SacI	GAGCTC	1 cut(s)	477
SapI	GCTCTTC	1 cut(s)	998
SaqAI	TTAA	2 cut(s)	228, 1046
SatI	GCNGC	3 cut(s)	113, 378, 722
Sau3AI	GATC	7 cut(s)	144, 524, 567, 743, 813, 864, 870
Sau96I	GGNCC	1 cut(s)	480
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	2 cut(s)	790, 1066
ScrFI	CCNGG	3 cut(s)	484, 542, 565
SduI	GDGCHC	5 cut(s)	461, 477, 559, 881, 1042
SfaNI	GCATC	1 cut(s)	194
SfcI	CTRYAG	2 cut(s)	113, 733
SfuI	TTCGAA	1 cut(s)	836
Sse9I	AATT	5 cut(s)	339, 356, 571, 709, 1107
SsiI	CCGC	3 cut(s)	132, 800, 824
SspMI	CTAG	4 cut(s)	177, 195, 243, 984
SstI	GAGCTC	1 cut(s)	477
StyD4I	CCNGG	3 cut(s)	482, 540, 563
StyI	CCWWGG	2 cut(s)	659, 785
TaaI	ACNGT	3 cut(s)	73, 124, 331
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	2 cut(s)	523, 836
TasI	AATT	5 cut(s)	339, 356, 571, 709, 1107
TatI	WGTACW	2 cut(s)	117, 173
TfiI	GAWTC	2 cut(s)	530, 790
Tru1I	TTAA	2 cut(s)	228, 1046
Tru9I	TTAA	2 cut(s)	228, 1046
TscAI	CASTG	2 cut(s)	78, 1086
TseFI	GTSAC	2 cut(s)	921, 993
TseI	GCWGC	3 cut(s)	112, 377, 721
Tsp45I	GTSAC	2 cut(s)	921, 993
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	2 cut(s)	78, 1086
VspI	ATTAAT	1 cut(s)	1046
XapI	RAATTY	3 cut(s)	339, 709, 1107
XspI	CTAG	4 cut(s)	177, 195, 243, 984
ZrmI	AGTACT	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.