Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Reverse (-)

3309802 .. 3312161

Gene Structure 2360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05820.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGTTGCTAAAACCCCACCAAAGCAAAGAAAGATGGTAGCCCCTCTCAATCCAGCTCTGCTTAGAGAAACAGTGAAGAAGGTGGATAGGTGTATGGCTAGGTTGCAGGAGCTGCAGTATACAGTGACGGGTGGGACGAAGGTGATATCGGGAGTGAGTCTCAGCCCGAGAAGTACTAGAGGTTATATGAGGACTAGTCTCAGATGTAAACAAGAATCTGCAAGGATAAAAGGTTTGACGCCGAGGAAATCTCCGGTGGGCAAGTTTCCGGCAGGGAAGTCTCCAGCAAAGTCAGCAGGGGAATGGCAGAGAATGTCACTGCCGGCAATGCTGCTCAGCGAAACAGTCGGAGAAATTCTTCAGTCTAGTCAATTTGCTAGGGAAATAGTAGCATCAGTTCCCAAGAAAACCACCATAGAAGACCCCAAAACCCCAATGTCCCAACAGAGGAAACAGAGACCACCCCCTGAAAACACAGAGCTCATGGCCAGAAGAAAGAGGGAGAAGCACAACAAAGCTCAATTGAACCGATCAGAATCACGCTCACCGGTTCTCCAAAGAGCCCGGTCTCGAATCAACTTCAAGGTTTCGCCTCCTAAGAAGAGAGAGATAGAGAAAGAGAACACCAGATACTTGGCAAACAGAGTGTCTCCCAAAAACAGACCATGGGCTAAAAAGAGTGTATTGTTTCCCAACCCTTTGTTTTTGGCTACAGATACTTCACCAACTCAAAACAAGTTTTGTAGAACAAGGTCACCAATGATCGGAAGAAGTAGTACTAGTAATACTAAGCCACACACTCAGCAGATTCAGACTCCACACAAGTTTTTGATCAAGTCTCCAGCTTCGGCTTCAAAGTTCCAGGTCAAGATTAAGAGCCCTCCATTGATTTCTTCTCTTTCGCCAACTAAGGCCAAGAAGTCTCCGAAGAAATCTGCTGTGTCGAAACTGCGGCGGTCATTTTCTCCGTCCAGATTGGCTACTAGATTGGTGTCTCTGTCTCCATTGAAGAGTAGGAAGAGTGTGCAGAAGAGTGAGGTTGTAATAATGCCGGGTTTGAAACAGCGTCCAACTTCCTCAATGCCACTGGGAATTTCAGCTCGGAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

371

Amino Acids

41.44

Weight (kDa)

11.68

Isoelectric Point (pI)

76.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	119
AciI	CCGC	2 cut(s)	952, 955
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	2 cut(s)	354, 1092
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	2 cut(s)	175, 778
AfiI	CCNNNNNNNGG	2 cut(s)	447, 764
AgeI	ACCGGT	1 cut(s)	547
AgsI	TTSAA	5 cut(s)	526, 583, 855, 1009, 1060
AhlI	ACTAGT	2 cut(s)	194, 779
AjnI	CCWGG	1 cut(s)	861
AluBI	AGCT	6 cut(s)	56, 112, 481, 518, 845, 1100
AluI	AGCT	6 cut(s)	56, 112, 481, 518, 845, 1100
Alw21I	GWGCWC	1 cut(s)	483
AlwNI	CAGNNNCTG	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	486, 912
ApeKI	GCWGC	2 cut(s)	112, 331
ApoI	RAATTY	2 cut(s)	354, 1092
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AsiGI	ACCGGT	1 cut(s)	547
Asp700I	GAANNNNTTC	1 cut(s)	357
AsuC2I	CCSGG	2 cut(s)	565, 1053
AsuHPI	GGTGA	4 cut(s)	154, 537, 714, 747
AvaI	CYCGRG	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	488
BanII	GRGCYC	3 cut(s)	483, 565, 881
BarI	GAAGNNNNNNTAC	2 cut(s)	760, 792
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	2 cut(s)	99, 318
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	863
BclI	TGATCA	1 cut(s)	831
BcnI	CCSGG	2 cut(s)	565, 1053
BcuI	ACTAGT	2 cut(s)	194, 779
BfaI	CTAG	7 cut(s)	99, 177, 195, 366, 378, 780, 984
BfmI	CTRYAG	2 cut(s)	113, 711
BisI	GCNGC	3 cut(s)	113, 332, 953
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	3 cut(s)	114, 333, 954
BmcAI	AGTACT	2 cut(s)	175, 778
Bme1390I	CCNGG	3 cut(s)	565, 863, 1053
BmeT110I	CYCGRG	1 cut(s)	166
BmrFI	CCNGG	3 cut(s)	565, 863, 1053
BmrI	ACTGGG	1 cut(s)	1097
BmsI	GCATC	1 cut(s)	401
BmuI	ACTGGG	1 cut(s)	1097
BpiI	GAAGAC	1 cut(s)	426
BplI	GAGNNNNNCTC	4 cut(s)	144, 176, 235, 267
BpmI	CTGGAG	2 cut(s)	267, 825
Bpu1102I	GCTNAGC	1 cut(s)	335
BpuMI	CCSGG	2 cut(s)	565, 1053
BsaBI	GATNNNNATC	1 cut(s)	535
BsaHI	GRCGYC	1 cut(s)	239
BsaI	GGTCTC	2 cut(s)	451, 573
BsaJI	CCNNGG	2 cut(s)	242, 665
BsaWI	WCCGGW	2 cut(s)	253, 547
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 537, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 764
Bse118I	RCCGGY	2 cut(s)	322, 547
Bse1I	ACTGG	1 cut(s)	1092
Bse3DI	GCAATG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	863
BseDI	CCNNGG	2 cut(s)	242, 665
BseJI	GATNNNNATC	1 cut(s)	535
BseLI	CCNNNNNNNGG	2 cut(s)	447, 764
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	4 cut(s)	175, 214, 349, 815
BseNI	ACTGG	1 cut(s)	1092
BseXI	GCAGC	2 cut(s)	99, 318
BsgI	GTGCAG	1 cut(s)	1046
BshFI	GGCC	2 cut(s)	488, 914
BshTI	ACCGGT	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	6 cut(s)	254, 269, 323, 548, 565, 1052
BslFI	GGGAC	2 cut(s)	148, 424
BslI	CCNNNNNNNGG	2 cut(s)	447, 764
BsmFI	GGGAC	2 cut(s)	148, 424
BsnI	GGCC	2 cut(s)	488, 914
Bso31I	GGTCTC	2 cut(s)	451, 573
BsoBI	CYCGRG	1 cut(s)	166
Bsp1286I	GDGCHC	3 cut(s)	483, 565, 881
Bsp143I	GATC	3 cut(s)	530, 762, 831
Bsp1720I	GCTNAGC	1 cut(s)	335
Bsp19I	CCATGG	1 cut(s)	665
BspACI	CCGC	2 cut(s)	952, 955
BspANI	GGCC	2 cut(s)	488, 914
BspCNI	CTCAG	4 cut(s)	174, 213, 348, 814
BspMAI	CTGCAG	1 cut(s)	117
BspTNI	GGTCTC	2 cut(s)	451, 573
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	2 cut(s)	322, 547
BsrI	ACTGG	1 cut(s)	1092
BssAI	RCCGGY	2 cut(s)	322, 547
BssECI	CCNNGG	2 cut(s)	242, 665
BssMI	GATC	3 cut(s)	530, 762, 831
BssNAI	GTATAC	1 cut(s)	120
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	665
Bst1107I	GTATAC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	3 cut(s)	73, 124, 346
Bst6I	CTCTTC	4 cut(s)	596, 1004, 1013, 1025
BstACI	GRCGYC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	8 cut(s)	62, 161, 200, 335, 597, 789, 801, 909
BstDSI	CCRYGG	1 cut(s)	665
BstEII	GGTNACC	1 cut(s)	753
BstKTI	GATC	3 cut(s)	533, 765, 834
BstMBI	GATC	3 cut(s)	530, 762, 831
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 293, 328
BstNI	CCWGG	1 cut(s)	863
BstPI	GGTNACC	1 cut(s)	753
BstSCI	CCNGG	3 cut(s)	563, 861, 1051
BstSFI	CTRYAG	2 cut(s)	113, 711
BstV1I	GCAGC	2 cut(s)	99, 318
BstV2I	GAAGAC	1 cut(s)	426
BstXI	CCANNNNNNTGG	1 cut(s)	634
BstZ17I	GTATAC	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	488, 914
BtgI	CCRYGG	1 cut(s)	665
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	4 cut(s)	78, 129, 317, 1085
Cac8I	GCNNGC	1 cut(s)	324
CaiI	CAGNNNCTG	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	322, 547
CseI	GACGC	2 cut(s)	247, 1055
Csp6I	GTAC	2 cut(s)	174, 777
CspAI	ACCGGT	1 cut(s)	547
CviAII	CATG	2 cut(s)	484, 666
CviQI	GTAC	2 cut(s)	174, 777
DdeI	CTNAG	8 cut(s)	62, 161, 200, 335, 597, 789, 801, 909
DpnI	GATC	3 cut(s)	532, 764, 833
DpnII	GATC	3 cut(s)	530, 762, 831
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	4 cut(s)	596, 1004, 1013, 1025
EarI	CTCTTC	4 cut(s)	596, 1004, 1013, 1025
Ecl136II	GAGCTC	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	665
Eco24I	GRGCYC	3 cut(s)	483, 565, 881
Eco31I	GGTCTC	2 cut(s)	451, 573
Eco32I	GATATC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	166
Eco91I	GGTNACC	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	753
EcoRII	CCWGG	1 cut(s)	861
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	665
EcoT38I	GRGCYC	3 cut(s)	483, 565, 881
ErhI	CCWWGG	1 cut(s)	665
FaeI	CATG	2 cut(s)	487, 669
FaiI	YATR	7 cut(s)	95, 120, 186, 188, 416, 485, 667
FaqI	GGGAC	2 cut(s)	148, 424
FatI	CATG	2 cut(s)	483, 665
FbaI	TGATCA	1 cut(s)	831
FblI	GTMKAC	1 cut(s)	119
Fnu4HI	GCNGC	3 cut(s)	113, 332, 953
FriOI	GRGCYC	3 cut(s)	483, 565, 881
Fsp4HI	GCNGC	3 cut(s)	113, 332, 953
FspBI	CTAG	7 cut(s)	99, 177, 195, 366, 378, 780, 984
GluI	GCNGC	3 cut(s)	113, 332, 953
GsuI	CTGGAG	2 cut(s)	267, 825
HaeIII	GGCC	2 cut(s)	488, 914
HapII	CCGG	6 cut(s)	254, 269, 323, 548, 565, 1052
HgaI	GACGC	2 cut(s)	247, 1055
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	487, 669
HinfI	GANTC	6 cut(s)	157, 215, 536, 573, 808, 814
HpaII	CCGG	6 cut(s)	254, 269, 323, 548, 565, 1052
HphI	GGTGA	4 cut(s)	154, 537, 714, 747
Hpy166II	GTNNAC	2 cut(s)	120, 209
Hpy188I	TCNGA	7 cut(s)	203, 350, 535, 767, 813, 927, 1104
Hpy188III	TCNNGA	4 cut(s)	150, 570, 868, 972
Hpy8I	GTNNAC	2 cut(s)	120, 209
HpyAV	CCTTC	2 cut(s)	73, 133
HpyCH4III	ACNGT	3 cut(s)	73, 124, 346
HpyCH4V	TGCA	4 cut(s)	106, 115, 221, 1027
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 293, 328
HpyF3I	CTNAG	8 cut(s)	62, 161, 200, 335, 597, 789, 801, 909
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	487, 669
KroI	GCCGGC	1 cut(s)	322
KroNI	GCCGGC	1 cut(s)	324
Ksp22I	TGATCA	1 cut(s)	831
Kzo9I	GATC	3 cut(s)	530, 762, 831
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	2 cut(s)	99, 318
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	7 cut(s)	99, 177, 195, 366, 378, 780, 984
MaeIII	GTNAC	3 cut(s)	124, 315, 753
MalI	GATC	3 cut(s)	532, 764, 833
MboI	GATC	3 cut(s)	530, 762, 831
MfeI	CAATTG	1 cut(s)	521
MhlI	GDGCHC	3 cut(s)	483, 565, 881
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	5 cut(s)	354, 371, 521, 1092, 1108
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	2 cut(s)	166, 808
MmeI	TCCRAC	2 cut(s)	328, 1094
Mox20I	TGGCCA	1 cut(s)	488
MroNI	GCCGGC	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	2 cut(s)	873, 1111
Msp20I	TGGCCA	1 cut(s)	488
MspI	CCGG	6 cut(s)	254, 269, 323, 548, 565, 1052
MspR9I	CCNGG	3 cut(s)	565, 863, 1053
MunI	CAATTG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	863
MwoI	GCNNNNNNNGC	3 cut(s)	112, 293, 328
NaeI	GCCGGC	1 cut(s)	324
NciI	CCSGG	2 cut(s)	565, 1053
NcoI	CCATGG	1 cut(s)	665
NdeII	GATC	3 cut(s)	530, 762, 831
NgoMIV	GCCGGC	1 cut(s)	322
NlaIII	CATG	2 cut(s)	487, 669
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	3 cut(s)	124, 315, 753
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PdiI	GCCGGC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	4 cut(s)	215, 536, 573, 808
PinAI	ACCGGT	1 cut(s)	547
PkrI	GCNGC	3 cut(s)	114, 333, 954
PleI	GAGTC	2 cut(s)	165, 808
PpsI	GAGTC	2 cut(s)	165, 808
Psp124BI	GAGCTC	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	861
PspEI	GGTNACC	1 cut(s)	753
PspGI	CCWGG	1 cut(s)	861
PsrI	GAACNNNNNNTAC	4 cut(s)	381, 413, 614, 646
PstI	CTGCAG	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	112
RsaI	GTAC	2 cut(s)	175, 778
RsaNI	GTAC	2 cut(s)	174, 777
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	873, 1111
SatI	GCNGC	3 cut(s)	113, 332, 953
Sau3AI	GATC	3 cut(s)	530, 762, 831
ScaI	AGTACT	2 cut(s)	175, 778
SchI	GAGTC	2 cut(s)	166, 808
ScrFI	CCNGG	3 cut(s)	565, 863, 1053
SduI	GDGCHC	3 cut(s)	483, 565, 881
SfaNI	GCATC	1 cut(s)	401
SfcI	CTRYAG	2 cut(s)	113, 711
SpeI	ACTAGT	2 cut(s)	194, 779
Sse9I	AATT	5 cut(s)	354, 371, 521, 1092, 1108
SsiI	CCGC	2 cut(s)	952, 955
SspMI	CTAG	7 cut(s)	99, 177, 195, 366, 378, 780, 984
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	3 cut(s)	563, 861, 1051
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	3 cut(s)	73, 124, 346
TaqI	TCGA	2 cut(s)	571, 944
TasI	AATT	5 cut(s)	354, 371, 521, 1092, 1108
TatI	WGTACW	2 cut(s)	173, 776
TauI	GCSGC	1 cut(s)	955
TfiI	GAWTC	4 cut(s)	215, 536, 573, 808
Tru1I	TTAA	2 cut(s)	873, 1111
Tru9I	TTAA	2 cut(s)	873, 1111
TscAI	CASTG	4 cut(s)	78, 129, 324, 1092
TseFI	GTSAC	3 cut(s)	124, 315, 753
TseI	GCWGC	2 cut(s)	112, 331
Tsp45I	GTSAC	3 cut(s)	124, 315, 753
TspGWI	ACGGA	1 cut(s)	957
TspRI	CASTG	4 cut(s)	78, 129, 324, 1092
XapI	RAATTY	2 cut(s)	354, 1092
XmiI	GTMKAC	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	7 cut(s)	99, 177, 195, 366, 378, 780, 984
ZrmI	AGTACT	2 cut(s)	175, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.