Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Forward (+)

28664360 .. 28666509

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G326100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGTTGCGAGAACCCCACCGAAGCAGAGGAAAATGGTAGCCCCTCTCAATCCTGTTTTGCTCAGAGAAACAGTGAAGAAGGTGGATAGATGCATGGCTCGGTTGCAGGAGCTACAGTACACAGTTTCAGGTGGTACAAAGGTGATCTCCGGAGTGAGTCTCAGCCCTCGCAGTACTAGAGGTTATCTAAGGACTAGCCTCCGATGCAAACAAGAAACTGCAAGGATTAAAGGTTCTGCCCCTAGGAAATCTCCTGTTGGGAAGTTTCCAGCAAATGCAGGAGGGGAGTGGCAGAGAATGTCATTGCCGGCAATGCTGGTAGGTGAAACAGTCGGAGAAATTCTACAAGCAAGTCAATTTGCAAGAGAAATAGTAGCAGCAGTTGGTAGTAAAACCAAGAAAACCACTGTGGAAGACCCCAAAACCCCATTGACCCAACAGAGGAAACAGAGGCAATTCCCTGAAAACACGGAACTCAGGGCCAGAAGGAAGAAGGAGAAGCACAACAAATCTCAATCCTTTCAATCAGAATCAGGTTCCCCAATACTCCAACGGGCCCGTTCTCGAATCAATTTCAAGGTTTCACCTCCAAACAAGAGAGAAGTGTTGAAAGAAAACAACAGATACTTGGCAAACAGAGTGTCTCCCAAGAATAGGCCATGGGCTAAAAAGAGTGTGTTATTTCCCAACCCCTTGTTTTTGTCCTCAGATCCTTCTTCTTGTTCAAATCCGCAGAAGTTTTGCAGGACAAGGTCACCAATCATTGGTAGAAATGAAAATAATAATAAGCCACGGATTCAGACTCCACACAAGTTCTTAATCAAGTCTCCACCTTCAGCTTCCAAGTTTCAGGTCAAGATTAAGAGCCCTCCATTGGTTTCTTCTCTTTCTCCAACAAAAATAGCCAAGAAGTCTCCCAAGATGTCAACTGCCTCGAAACTACGCCGGTCATTTTCACCGTCGAGATTGGCAACTAGATTGGTGTCTCCATTGAAGAGCAGAAAGAGTGTGCAAAAGAGTGAGGGACTAGTAATGCGTGGTTTGGAACAGCGTCCAACTTGTTCAGTGCCACTGGGAATTTCAGCTCGGAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

40.83

Weight (kDa)

11.56

Isoelectric Point (pI)

67.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	764
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	1 cut(s)	731
AclWI	GGATC	1 cut(s)	704
AcsI	RAATTY	3 cut(s)	339, 1077, 1092
AcuI	CTGAAG	1 cut(s)	819
AfaI	GTAC	3 cut(s)	119, 136, 175
AfiI	CCNNNNNNNGG	4 cut(s)	441, 654, 764, 874
AgsI	TTSAA	5 cut(s)	524, 577, 610, 726, 994
AhlI	ACTAGT	1 cut(s)	1027
AloI	GAACNNNNNNTCC	2 cut(s)	217, 249
AluBI	AGCT	3 cut(s)	112, 839, 1085
AluI	AGCT	3 cut(s)	112, 839, 1085
Alw26I	GTCTC	5 cut(s)	164, 648, 831, 918, 990
AlwI	GGATC	1 cut(s)	704
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	3 cut(s)	480, 555, 656
ApaI	GGGCCC	1 cut(s)	559
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	3 cut(s)	339, 1077, 1092
ArsI	GACNNNNNNTTYG	2 cut(s)	626, 658
AspA2I	CCTAGG	1 cut(s)	242
AspS9I	GGNCC	3 cut(s)	480, 555, 556
AsuHPI	GGTGA	5 cut(s)	154, 335, 576, 747, 948
AvrII	CCTAGG	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	559
BaeI	ACNNNNGTAYC	2 cut(s)	126, 159
BanII	GRGCYC	2 cut(s)	559, 869
BbsI	GAAGAC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	389
BcoDI	GTCTC	5 cut(s)	164, 648, 831, 918, 990
BcuI	ACTAGT	1 cut(s)	1027
BfaI	CTAG	5 cut(s)	177, 195, 243, 975, 1028
BfmI	CTRYAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	378
BlnI	CCTAGG	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	379
BmcAI	AGTACT	1 cut(s)	175
BmgT120I	GGNCC	3 cut(s)	480, 555, 556
BmiI	GGNNCC	2 cut(s)	538, 557
BmrI	ACTGGG	1 cut(s)	1082
BmsI	GCATC	2 cut(s)	80, 194
BmuI	ACTGGG	1 cut(s)	1082
BpiI	GAAGAC	1 cut(s)	420
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BsaJI	CCNNGG	3 cut(s)	242, 659, 791
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	4 cut(s)	441, 654, 764, 874
Bse118I	RCCGGY	2 cut(s)	307, 945
Bse1I	ACTGG	1 cut(s)	1077
Bse3DI	GCAATG	2 cut(s)	302, 318
BseAI	TCCGGA	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	242, 659, 791
BseLI	CCNNNNNNNGG	4 cut(s)	441, 654, 764, 874
BseMI	GCAATG	2 cut(s)	302, 318
BseMII	CTCAG	4 cut(s)	76, 175, 490, 720
BseNI	ACTGG	1 cut(s)	1077
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	1 cut(s)	389
BshFI	GGCC	3 cut(s)	482, 557, 658
BsiSI	CCGG	3 cut(s)	150, 308, 946
BslFI	GGGAC	1 cut(s)	1038
BslI	CCNNNNNNNGG	4 cut(s)	441, 654, 764, 874
BsmAI	GTCTC	5 cut(s)	164, 648, 831, 918, 990
BsmFI	GGGAC	1 cut(s)	1038
BsnI	GGCC	3 cut(s)	482, 557, 658
Bsp120I	GGGCCC	1 cut(s)	555
Bsp1286I	GDGCHC	2 cut(s)	559, 869
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	144, 709
Bsp19I	CCATGG	1 cut(s)	659
BspACI	CCGC	1 cut(s)	731
BspANI	GGCC	3 cut(s)	482, 557, 658
BspCNI	CTCAG	4 cut(s)	75, 174, 489, 719
BspEI	TCCGGA	1 cut(s)	149
BspLI	GGNNCC	2 cut(s)	538, 557
BspPI	GGATC	1 cut(s)	704
BspQI	GCTCTTC	1 cut(s)	989
BsrDI	GCAATG	2 cut(s)	302, 318
BsrFI	RCCGGY	2 cut(s)	307, 945
BsrI	ACTGG	1 cut(s)	1077
BssAI	RCCGGY	2 cut(s)	307, 945
BssECI	CCNNGG	3 cut(s)	242, 659, 791
BssMI	GATC	2 cut(s)	144, 709
BssT1I	CCWWGG	2 cut(s)	242, 659
Bst4CI	ACNGT	6 cut(s)	73, 117, 124, 331, 409, 960
Bst6I	CTCTTC	1 cut(s)	989
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	5 cut(s)	62, 161, 188, 476, 706
BstDSI	CCRYGG	2 cut(s)	659, 791
BstEII	GGTNACC	1 cut(s)	753
BstKTI	GATC	2 cut(s)	147, 712
BstMAI	GTCTC	5 cut(s)	164, 648, 831, 918, 990
BstMBI	GATC	2 cut(s)	144, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 313
BstPI	GGTNACC	1 cut(s)	753
BstSFI	CTRYAG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	559
BstV1I	GCAGC	1 cut(s)	389
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	3 cut(s)	482, 557, 658
BtgI	CCRYGG	2 cut(s)	659, 791
BtsIMutI	CAGTG	4 cut(s)	78, 405, 1070, 1071
Cac8I	GCNNGC	1 cut(s)	309
Cfr10I	RCCGGY	2 cut(s)	307, 945
Cfr13I	GGNCC	3 cut(s)	480, 555, 556
CseI	GACGC	1 cut(s)	1040
Csp6I	GTAC	3 cut(s)	118, 135, 174
CviAII	CATG	2 cut(s)	94, 660
CviQI	GTAC	3 cut(s)	118, 135, 174
DdeI	CTNAG	5 cut(s)	62, 161, 188, 476, 706
DpnI	GATC	2 cut(s)	146, 711
DpnII	GATC	2 cut(s)	144, 709
Eam1104I	CTCTTC	1 cut(s)	989
EarI	CTCTTC	1 cut(s)	989
Eco130I	CCWWGG	2 cut(s)	242, 659
Eco24I	GRGCYC	2 cut(s)	559, 869
Eco57I	CTGAAG	1 cut(s)	819
Eco91I	GGTNACC	1 cut(s)	753
EcoO65I	GGTNACC	1 cut(s)	753
EcoT14I	CCWWGG	2 cut(s)	242, 659
EcoT22I	ATGCAT	1 cut(s)	95
EcoT38I	GRGCYC	2 cut(s)	559, 869
ErhI	CCWWGG	2 cut(s)	242, 659
FaeI	CATG	2 cut(s)	97, 663
FaiI	YATR	2 cut(s)	95, 661
FaqI	GGGAC	1 cut(s)	1038
FatI	CATG	2 cut(s)	93, 659
Fnu4HI	GCNGC	1 cut(s)	378
FriOI	GRGCYC	2 cut(s)	559, 869
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	5 cut(s)	177, 195, 243, 975, 1028
GluI	GCNGC	1 cut(s)	378
HaeIII	GGCC	3 cut(s)	482, 557, 658
HapII	CCGG	3 cut(s)	150, 308, 946
HgaI	GACGC	1 cut(s)	1040
Hin1II	CATG	2 cut(s)	97, 663
HincII	GTYRAC	1 cut(s)	927
HindII	GTYRAC	1 cut(s)	927
HinfI	GANTC	5 cut(s)	157, 530, 567, 796, 802
HpaII	CCGG	3 cut(s)	150, 308, 946
HphI	GGTGA	5 cut(s)	154, 335, 576, 747, 948
Hpy166II	GTNNAC	2 cut(s)	120, 927
Hpy188I	TCNGA	7 cut(s)	65, 203, 335, 529, 709, 801, 1089
Hpy188III	TCNNGA	4 cut(s)	150, 564, 856, 963
Hpy8I	GTNNAC	2 cut(s)	120, 927
Hpy99I	CGWCG	1 cut(s)	964
HpyAV	CCTTC	5 cut(s)	73, 480, 487, 723, 843
HpyCH4III	ACNGT	6 cut(s)	73, 117, 124, 331, 409, 960
HpyCH4V	TGCA	8 cut(s)	93, 106, 207, 221, 278, 362, 744, 1012
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 313
HpyF3I	CTNAG	5 cut(s)	62, 161, 188, 476, 706
Hsp92II	CATG	2 cut(s)	97, 663
Kpn2I	TCCGGA	1 cut(s)	149
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Kzo9I	GATC	2 cut(s)	144, 709
LguI	GCTCTTC	1 cut(s)	989
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	2 cut(s)	80, 194
MaeI	CTAG	5 cut(s)	177, 195, 243, 975, 1028
MaeIII	GTNAC	1 cut(s)	753
MalI	GATC	2 cut(s)	146, 711
MboI	GATC	2 cut(s)	144, 709
MboII	GAAGA	6 cut(s)	88, 425, 502, 708, 873, 1006
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	2 cut(s)	559, 869
MluCI	AATT	6 cut(s)	339, 356, 455, 571, 1077, 1092
MlyI	GAGTC	2 cut(s)	166, 796
MmeI	TCCRAC	4 cut(s)	313, 574, 917, 1079
Mph1103I	ATGCAT	1 cut(s)	95
MroI	TCCGGA	1 cut(s)	149
MroNI	GCCGGC	1 cut(s)	307
MseI	TTAA	4 cut(s)	228, 818, 861, 1096
MspI	CCGG	3 cut(s)	150, 308, 946
MwoI	GCNNNNNNNGC	2 cut(s)	204, 313
NaeI	GCCGGC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	659
NdeII	GATC	2 cut(s)	144, 709
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	97, 663
NlaIV	GGNNCC	2 cut(s)	538, 557
NmuCI	GTSAC	1 cut(s)	753
NsiI	ATGCAT	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	989
PdiI	GCCGGC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	530, 567, 796
PflFI	GACNNNGTC	1 cut(s)	751
PflMI	CCANNNNNTGG	1 cut(s)	764
PkrI	GCNGC	1 cut(s)	379
PleI	GAGTC	2 cut(s)	165, 796
PpsI	GAGTC	2 cut(s)	165, 796
PspEI	GGTNACC	1 cut(s)	753
PspN4I	GGNNCC	2 cut(s)	538, 557
PspOMI	GGGCCC	1 cut(s)	555
PspPI	GGNCC	3 cut(s)	480, 555, 556
PsuI	RGATCY	1 cut(s)	709
PsyI	GACNNNGTC	1 cut(s)	751
RsaI	GTAC	3 cut(s)	119, 136, 175
RsaNI	GTAC	3 cut(s)	118, 135, 174
SapI	GCTCTTC	1 cut(s)	989
SaqAI	TTAA	4 cut(s)	228, 818, 861, 1096
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	2 cut(s)	144, 709
Sau96I	GGNCC	3 cut(s)	480, 555, 556
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	2 cut(s)	166, 796
SduI	GDGCHC	2 cut(s)	559, 869
SfaNI	GCATC	2 cut(s)	80, 194
SfcI	CTRYAG	1 cut(s)	113
SpeI	ACTAGT	1 cut(s)	1027
Sse9I	AATT	6 cut(s)	339, 356, 455, 571, 1077, 1092
SsiI	CCGC	1 cut(s)	731
SspMI	CTAG	5 cut(s)	177, 195, 243, 975, 1028
StyI	CCWWGG	2 cut(s)	242, 659
TaaI	ACNGT	6 cut(s)	73, 117, 124, 331, 409, 960
TaqI	TCGA	3 cut(s)	565, 935, 962
TasI	AATT	6 cut(s)	339, 356, 455, 571, 1077, 1092
TatI	WGTACW	2 cut(s)	117, 173
TfiI	GAWTC	3 cut(s)	530, 567, 796
Tru1I	TTAA	4 cut(s)	228, 818, 861, 1096
Tru9I	TTAA	4 cut(s)	228, 818, 861, 1096
TscAI	CASTG	4 cut(s)	78, 412, 1071, 1077
TseFI	GTSAC	1 cut(s)	753
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	753
TspDTI	ATGAA	1 cut(s)	789
TspGWI	ACGGA	2 cut(s)	485, 808
TspRI	CASTG	4 cut(s)	78, 412, 1071, 1077
Tth111I	GACNNNGTC	1 cut(s)	751
Van91I	CCANNNNNTGG	1 cut(s)	764
XapI	RAATTY	3 cut(s)	339, 1077, 1092
XmaJI	CCTAGG	1 cut(s)	242
XspI	CTAG	5 cut(s)	177, 195, 243, 975, 1028
ZrmI	AGTACT	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.