Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8054938.1

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 536

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8054938.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 205 bp

atggctaggttgcaggagctacagtacacagtgacaggtgggacgaaggtgatctcgggagtgagtctcagcccgagaagtactagagtttatctgaggactagtcttagatgcaaacaagaatctgcaaggattaaaggtttgacgccgaggaaatctccggtggggaagtttccggctgggaagtctccggcaaagtcagcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

7.33

Weight (kDa)

11.38

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	2 cut(s)	26, 82
AhlI	ACTAGT	1 cut(s)	101
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	71, 192
Ama87I	CYCGRG	2 cut(s)	55, 73
AsuHPI	GGTGA	1 cut(s)	61
AvaI	CYCGRG	2 cut(s)	55, 73
BcoDI	GTCTC	2 cut(s)	71, 192
BcuI	ACTAGT	1 cut(s)	101
BfaI	CTAG	3 cut(s)	6, 84, 102
BfmI	CTRYAG	1 cut(s)	20
BmcAI	AGTACT	1 cut(s)	82
BmeT110I	CYCGRG	2 cut(s)	55, 73
BmsI	GCATC	1 cut(s)	101
BplI	GAGNNNNNCTC	4 cut(s)	51, 83, 142, 174
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
BseDI	CCNNGG	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	82, 86
BseYI	CCCAGC	1 cut(s)	179
BsiHKCI	CYCGRG	2 cut(s)	55, 73
BsiSI	CCGG	3 cut(s)	161, 176, 191
BslFI	GGGAC	1 cut(s)	55
BsmAI	GTCTC	2 cut(s)	71, 192
BsmFI	GGGAC	1 cut(s)	55
BsoBI	CYCGRG	2 cut(s)	55, 73
Bsp143I	GATC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	81, 87
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	24, 31
BstACI	GRCGYC	1 cut(s)	146
BstDEI	CTNAG	3 cut(s)	68, 95, 107
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	2 cut(s)	71, 192
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstSFI	CTRYAG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	36
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	25, 81
CviJI	RGCY	4 cut(s)	5, 19, 72, 179
CviKI_1	RGCY	4 cut(s)	5, 19, 72, 179
CviQI	GTAC	2 cut(s)	25, 81
DdeI	CTNAG	3 cut(s)	68, 95, 107
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eco88I	CYCGRG	2 cut(s)	55, 73
FaqI	GGGAC	1 cut(s)	55
FspBI	CTAG	3 cut(s)	6, 84, 102
GsaI	CCCAGC	1 cut(s)	183
HapII	CCGG	3 cut(s)	161, 176, 191
HgaI	GACGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	146
HinfI	GANTC	2 cut(s)	64, 122
HpaII	CCGG	3 cut(s)	161, 176, 191
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	57
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	24, 31
HpyCH4V	TGCA	3 cut(s)	13, 114, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	3 cut(s)	68, 95, 107
Hsp92I	GRCGYC	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	21, 165, 174, 189
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	3 cut(s)	6, 84, 102
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	2 cut(s)	90, 144
MseI	TTAA	1 cut(s)	135
MspI	CCGG	3 cut(s)	161, 176, 191
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	1 cut(s)	51
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	179
RsaI	GTAC	2 cut(s)	26, 82
RsaNI	GTAC	2 cut(s)	25, 81
SaqAI	TTAA	1 cut(s)	135
Sau3AI	GATC	1 cut(s)	51
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	1 cut(s)	73
SetI	ASST	5 cut(s)	11, 21, 40, 51, 142
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	1 cut(s)	20
SpeI	ACTAGT	1 cut(s)	101
SspMI	CTAG	3 cut(s)	6, 84, 102
TaaI	ACNGT	2 cut(s)	24, 31
TatI	WGTACW	2 cut(s)	24, 80
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspRI	CASTG	1 cut(s)	36
XspI	CTAG	3 cut(s)	6, 84, 102
ZrmI	AGTACT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.