Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Reverse (-)

4288872 .. 4290563

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG062800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTTGCTAAAACCCCACCAAATCAGAGGAAGATGGTAGCCCCTCTCAATCCAGCTCTGCTTAGAGAAACAGTCAAGAAGGTGGATAGGTGTATGGCTAGGTTGCAGGAGCTACAGTACACAGTGACAGGTGGGACGAAGGTGATCTCGGGAGTGAGTCTCAGCCCGAGAAGTACTAGAGTTTATCTGAGGACTAGTCTTAGATGCAAACAAGAATCTGCAAGGATTAAAGGTTTGACGCCGAGGAAATCTCCGGTGGGGAAGTTTCCGGCTGGGAAGTCTCCGGCAAAGTCAGCAGGGGAATGGCAGAGAATGTCACTGCCGGCGATGCTTCTCAGCGAAACAGTCGGAGAAATTCTTCATTCAAGTCAATTTGCAAGAGAAATAGTAGCATCAGTGCCCAAGAAAACCACCATAGAAGACCCCAAAACCCCAATGACCCAACAGAAAAAACAGAGACCACCCCCTGAAAACACAGAGCTCAGGGCCAGAAGAAAGAAGGAGAAGCACAACAAATCTCAATCCAACCGATCAGAAGCTGGCTCACCGGTGCTCCAACGAGCCCGCTCCCGAATTAACTTCAAGGTTTCGCCTCCTAAGAAGAGAGAGATAGAGAAAGAAAACACCAGATACTTAGCAAACAGAGTGTCTCCCAAAAACAGACCATGGGCTAAAAAGAGTGTATTGTTTCCCAACCCTTTGTTTTCGGCCACAGATACTTCACCTCAGCAAAAGAAGTTTTGTAGAACAAGGTCACCAATGATTGGAAGAAGTACTAACAATACTAAACCTCAGACTCAGCAGATTCAAACTCCACACAAGTTCTTGATCAAGTCTCCAGCTTCGGCTTCAAAGTTCCAGGTCAAGATTAAGAGCCCTCCATTGGTTTCTTCTCTTTCGCCAACTAAGGCCAAGAAGTCTCCGAAGAAATCTGCTGTCTCGAAACTGCGGCGGTCATTTTCTCCGTCGAGATTGGCTACTAGATTGGTGTCTCTGTCTCCATTGAAGAGCAGGAAGAGTGTGCAGAAGAGTGAGGGACTAATAATGCCCGGTTTGAAACAGCGTCCAACTTCCTCAATGCCACTGGGAGTTTCAGCTCGGAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

41.21

Weight (kDa)

11.61

Isoelectric Point (pI)

70.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	764
AccBSI	CCGCTC	1 cut(s)	567
AciI	CCGC	3 cut(s)	565, 949, 952
AcoI	YGGCCR	1 cut(s)	708
AcsI	RAATTY	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	3 cut(s)	119, 175, 775
AfiI	CCNNNNNNNGG	2 cut(s)	764, 883
AgeI	ACCGGT	1 cut(s)	547
AgsI	TTSAA	6 cut(s)	366, 583, 809, 852, 1006, 1057
AhlI	ACTAGT	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	858
AluBI	AGCT	6 cut(s)	56, 112, 481, 539, 842, 1097
AluI	AGCT	6 cut(s)	56, 112, 481, 539, 842, 1097
Alw21I	GWGCWC	2 cut(s)	483, 555
Alw26I	GTCTC	9 cut(s)	164, 285, 451, 654, 840, 924, 943, 996, 1002
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	2 cut(s)	148, 166
AoxI	GGCC	3 cut(s)	486, 708, 909
ApoI	RAATTY	1 cut(s)	354
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AsiGI	ACCGGT	1 cut(s)	547
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	486
AsuC2I	CCSGG	1 cut(s)	1050
AsuHPI	GGTGA	4 cut(s)	154, 537, 714, 747
AvaI	CYCGRG	2 cut(s)	148, 166
BaeGI	GKGCMC	1 cut(s)	402
BanII	GRGCYC	3 cut(s)	483, 565, 878
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	483, 555
BbvCI	CCTCAGC	1 cut(s)	726
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	860
BclI	TGATCA	1 cut(s)	828
BcnI	CCSGG	1 cut(s)	1050
BcoDI	GTCTC	9 cut(s)	164, 285, 451, 654, 840, 924, 943, 996, 1002
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	4 cut(s)	99, 177, 195, 981
BfmI	CTRYAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	950
BlsI	GCNGC	1 cut(s)	951
BmcAI	AGTACT	2 cut(s)	175, 775
Bme1390I	CCNGG	2 cut(s)	860, 1050
BmeT110I	CYCGRG	2 cut(s)	148, 166
BmgT120I	GGNCC	1 cut(s)	486
BmrFI	CCNGG	2 cut(s)	860, 1050
BmrI	ACTGGG	1 cut(s)	1094
BmsI	GCATC	3 cut(s)	194, 318, 401
BmuI	ACTGGG	1 cut(s)	1094
BpiI	GAAGAC	1 cut(s)	426
BplI	GAGNNNNNCTC	4 cut(s)	144, 176, 235, 267
BpmI	CTGGAG	1 cut(s)	822
Bpu10I	CCTNAGC	2 cut(s)	482, 726
BpuMI	CCSGG	1 cut(s)	1050
BsaHI	GRCGYC	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	451
BsaJI	CCNNGG	2 cut(s)	242, 665
BsaWI	WCCGGW	2 cut(s)	253, 547
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 537, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	764, 883
Bse118I	RCCGGY	2 cut(s)	322, 547
Bse1I	ACTGG	1 cut(s)	1089
BseBI	CCWGG	1 cut(s)	860
BseDI	CCNNGG	2 cut(s)	242, 665
BseLI	CCNNNNNNNGG	2 cut(s)	764, 883
BseMII	CTCAG	7 cut(s)	175, 179, 349, 496, 740, 806, 812
BseNI	ACTGG	1 cut(s)	1089
BseSI	GKGCMC	1 cut(s)	402
BseYI	CCCAGC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	1043
BshFI	GGCC	3 cut(s)	488, 710, 911
BshTI	ACCGGT	1 cut(s)	547
BsiHKAI	GWGCWC	2 cut(s)	483, 555
BsiHKCI	CYCGRG	2 cut(s)	148, 166
BsiSI	CCGG	6 cut(s)	254, 269, 284, 323, 548, 1050
BslFI	GGGAC	2 cut(s)	148, 1050
BslI	CCNNNNNNNGG	2 cut(s)	764, 883
BsmAI	GTCTC	9 cut(s)	164, 285, 451, 654, 840, 924, 943, 996, 1002
BsmFI	GGGAC	2 cut(s)	148, 1050
BsnI	GGCC	3 cut(s)	488, 710, 911
Bso31I	GGTCTC	1 cut(s)	451
BsoBI	CYCGRG	2 cut(s)	148, 166
Bsp1286I	GDGCHC	5 cut(s)	402, 483, 555, 565, 878
Bsp143I	GATC	3 cut(s)	144, 530, 828
Bsp19I	CCATGG	1 cut(s)	665
BspACI	CCGC	3 cut(s)	565, 949, 952
BspANI	GGCC	3 cut(s)	488, 710, 911
BspCNI	CTCAG	7 cut(s)	174, 180, 348, 495, 739, 805, 811
BspQI	GCTCTTC	1 cut(s)	1001
BspTNI	GGTCTC	1 cut(s)	451
BsrBI	CCGCTC	1 cut(s)	567
BsrFI	RCCGGY	2 cut(s)	322, 547
BsrI	ACTGG	1 cut(s)	1089
BssAI	RCCGGY	2 cut(s)	322, 547
BssECI	CCNNGG	2 cut(s)	242, 665
BssMI	GATC	3 cut(s)	144, 530, 828
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	860
Bst4CI	ACNGT	4 cut(s)	73, 117, 124, 346
Bst6I	CTCTTC	4 cut(s)	596, 1001, 1010, 1022
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	324, 541, 565
BstDSI	CCRYGG	1 cut(s)	665
BstEII	GGTNACC	1 cut(s)	753
BstKTI	GATC	3 cut(s)	147, 533, 831
BstMAI	GTCTC	9 cut(s)	164, 285, 451, 654, 840, 924, 943, 996, 1002
BstMBI	GATC	3 cut(s)	144, 530, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 328
BstNI	CCWGG	1 cut(s)	860
BstPI	GGTNACC	1 cut(s)	753
BstSCI	CCNGG	2 cut(s)	858, 1048
BstSFI	CTRYAG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	402
BstV2I	GAAGAC	1 cut(s)	426
BsuRI	GGCC	3 cut(s)	488, 710, 911
BtgI	CCRYGG	1 cut(s)	665
BtgZI	GCGATG	1 cut(s)	341
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	4 cut(s)	129, 317, 402, 1082
Cac8I	GCNNGC	3 cut(s)	324, 541, 565
CaiI	CAGNNNCTG	1 cut(s)	539
Cfr10I	RCCGGY	2 cut(s)	322, 547
Cfr13I	GGNCC	1 cut(s)	486
CseI	GACGC	2 cut(s)	247, 1052
Csp6I	GTAC	3 cut(s)	118, 174, 774
CspAI	ACCGGT	1 cut(s)	547
CviAII	CATG	1 cut(s)	666
CviQI	GTAC	3 cut(s)	118, 174, 774
DpnI	GATC	3 cut(s)	146, 532, 830
DpnII	GATC	3 cut(s)	144, 530, 828
EaeI	YGGCCR	1 cut(s)	708
Eam1104I	CTCTTC	4 cut(s)	596, 1001, 1010, 1022
EarI	CTCTTC	4 cut(s)	596, 1001, 1010, 1022
Ecl136II	GAGCTC	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	665
Eco24I	GRGCYC	3 cut(s)	483, 565, 878
Eco31I	GGTCTC	1 cut(s)	451
Eco53kI	GAGCTC	1 cut(s)	481
Eco88I	CYCGRG	2 cut(s)	148, 166
Eco91I	GGTNACC	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	753
EcoRII	CCWGG	1 cut(s)	858
EcoT14I	CCWWGG	1 cut(s)	665
EcoT38I	GRGCYC	3 cut(s)	483, 565, 878
ErhI	CCWWGG	1 cut(s)	665
FaeI	CATG	1 cut(s)	669
FaiI	YATR	3 cut(s)	95, 416, 667
FaqI	GGGAC	2 cut(s)	148, 1050
FatI	CATG	1 cut(s)	665
FauI	CCCGC	1 cut(s)	572
FbaI	TGATCA	1 cut(s)	828
Fnu4HI	GCNGC	1 cut(s)	950
FriOI	GRGCYC	3 cut(s)	483, 565, 878
Fsp4HI	GCNGC	1 cut(s)	950
FspBI	CTAG	4 cut(s)	99, 177, 195, 981
GluI	GCNGC	1 cut(s)	950
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	822
HaeIII	GGCC	3 cut(s)	488, 710, 911
HapII	CCGG	6 cut(s)	254, 269, 284, 323, 548, 1050
HgaI	GACGC	2 cut(s)	247, 1052
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	669
HinfI	GANTC	4 cut(s)	157, 215, 796, 805
HpaII	CCGG	6 cut(s)	254, 269, 284, 323, 548, 1050
HphI	GGTGA	4 cut(s)	154, 537, 714, 747
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	7 cut(s)	27, 189, 350, 535, 795, 924, 1101
Hpy188III	TCNNGA	7 cut(s)	76, 150, 570, 826, 865, 940, 969
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	1 cut(s)	970
HpyAV	CCTTC	3 cut(s)	73, 133, 493
HpyCH4III	ACNGT	4 cut(s)	73, 117, 124, 346
HpyCH4V	TGCA	5 cut(s)	106, 207, 221, 377, 1024
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 328
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	669
KroI	GCCGGC	1 cut(s)	322
KroNI	GCCGGC	1 cut(s)	324
Ksp22I	TGATCA	1 cut(s)	828
Kzo9I	GATC	3 cut(s)	144, 530, 828
LguI	GCTCTTC	1 cut(s)	1001
LmnI	GCTCC	3 cut(s)	109, 558, 572
LweI	GCATC	3 cut(s)	194, 318, 401
MaeI	CTAG	4 cut(s)	99, 177, 195, 981
MaeIII	GTNAC	3 cut(s)	124, 315, 753
MalI	GATC	3 cut(s)	146, 532, 830
MbiI	CCGCTC	1 cut(s)	567
MboI	GATC	3 cut(s)	144, 530, 828
MhlI	GDGCHC	5 cut(s)	402, 483, 555, 565, 878
MluCI	AATT	4 cut(s)	354, 371, 573, 1105
MlyI	GAGTC	2 cut(s)	166, 790
MmeI	TCCRAC	4 cut(s)	328, 549, 580, 1091
MroNI	GCCGGC	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	4 cut(s)	228, 576, 870, 1108
MspI	CCGG	6 cut(s)	254, 269, 284, 323, 548, 1050
MspR9I	CCNGG	2 cut(s)	860, 1050
MvaI	CCWGG	1 cut(s)	860
MwoI	GCNNNNNNNGC	2 cut(s)	293, 328
NaeI	GCCGGC	1 cut(s)	324
NciI	CCSGG	1 cut(s)	1050
NcoI	CCATGG	1 cut(s)	665
NdeII	GATC	3 cut(s)	144, 530, 828
NgoMIV	GCCGGC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	669
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	3 cut(s)	124, 315, 753
PciSI	GCTCTTC	1 cut(s)	1001
PdiI	GCCGGC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	215, 805
PflMI	CCANNNNNTGG	1 cut(s)	764
PinAI	ACCGGT	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	951
PleI	GAGTC	2 cut(s)	165, 790
PpsI	GAGTC	2 cut(s)	165, 790
Psp124BI	GAGCTC	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	858
PspEI	GGTNACC	1 cut(s)	753
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	858
PspPI	GGNCC	1 cut(s)	486
PstNI	CAGNNNCTG	1 cut(s)	539
RsaI	GTAC	3 cut(s)	119, 175, 775
RsaNI	GTAC	3 cut(s)	118, 174, 774
SacI	GAGCTC	1 cut(s)	483
SapI	GCTCTTC	1 cut(s)	1001
SaqAI	TTAA	4 cut(s)	228, 576, 870, 1108
SatI	GCNGC	1 cut(s)	950
Sau3AI	GATC	3 cut(s)	144, 530, 828
Sau96I	GGNCC	1 cut(s)	486
ScaI	AGTACT	2 cut(s)	175, 775
SchI	GAGTC	2 cut(s)	166, 790
ScrFI	CCNGG	2 cut(s)	860, 1050
SduI	GDGCHC	5 cut(s)	402, 483, 555, 565, 878
SfaNI	GCATC	3 cut(s)	194, 318, 401
SfcI	CTRYAG	1 cut(s)	113
SgrAI	CRCCGGYG	1 cut(s)	547
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	4 cut(s)	354, 371, 573, 1105
SsiI	CCGC	3 cut(s)	565, 949, 952
SspMI	CTAG	4 cut(s)	99, 177, 195, 981
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	2 cut(s)	858, 1048
StyI	CCWWGG	1 cut(s)	665
TaaI	ACNGT	4 cut(s)	73, 117, 124, 346
TaqI	TCGA	2 cut(s)	941, 968
TasI	AATT	4 cut(s)	354, 371, 573, 1105
TatI	WGTACW	3 cut(s)	117, 173, 773
TauI	GCSGC	1 cut(s)	952
TfiI	GAWTC	2 cut(s)	215, 805
Tru1I	TTAA	4 cut(s)	228, 576, 870, 1108
Tru9I	TTAA	4 cut(s)	228, 576, 870, 1108
TscAI	CASTG	4 cut(s)	129, 324, 402, 1089
TseFI	GTSAC	3 cut(s)	124, 315, 753
Tsp45I	GTSAC	3 cut(s)	124, 315, 753
TspDTI	ATGAA	1 cut(s)	350
TspGWI	ACGGA	1 cut(s)	954
TspRI	CASTG	4 cut(s)	129, 324, 402, 1089
Van91I	CCANNNNNTGG	1 cut(s)	764
XapI	RAATTY	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	4 cut(s)	99, 177, 195, 981
ZrmI	AGTACT	2 cut(s)	175, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.