Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Forward (+)

29161049 .. 29163066

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1205400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTTGCGAGAACCCCACCAAAGCAGAGGAAAATGGTAGCCCCTCTCGATCCTCTTCTCCTCAGAGAAACGGTGAAGAAGGTGGATAGATGCATGGCTCGGTTGCAGGAGCTGCAGTACACAGTTTCGGGCGGTACGAAAGTGATTTCTGGAGTGAGTCTCAGCCCAAGGAGCACTCGAGGTTATCTCAGGACTAGCCTCCGATGTAAACAAGAAACTGCGAGGATTAAAGTTTCAGCCCCTAGAAAGTCCCCCGTTGGCAAGGTCCCTGCAAATGCAGGGGAGTGGCAGAGAATGTCGCTGCCTGCAATGCTGGTCGGCGAAACAGTCGGAGAAATTCTACAAGCAAGCAAGTTTGCAAGAGAAATAGTAGCAGCAGTTGGTAAAAAACCCCAGAAAACCACTTCAGAAGACCCCAAAACCCCAATGACACAACAGAGGAAACAGAGGCAAAACCCCGAAAACACAGAGCTCAGAGCCAGAAGAAAGAAGGAGAAGCACAACAAGTCTCAATCCACTCGATCAGAGTCCCGTTCCCCGATACTCCAACGGGCTCGTTCCAGGATCAATTTCAAGGTCTCACCTCCACACAAGAGAGATATGGAGAAAGAAAACAACAGATACTTGGCAAACAGAGTGTCTCCGAAAAATAGGCCATGGGCAAAAAAAAGCGTGTTGTTTCCCAACCCTTTGTTTTCGGCTTCGGATTCTTCTCAGCAGCAGAAGTTCTGCAGAACAAGATCACCAATCATTGGTAGAAATGATGGCAGTAATAATAGGCGACGGATTCATACTCCGCACAAGTTCTTGATCAAGTCCCCGCCTTCTGCTTCGAAATTTCCTTCACCTTCCAAGTTTCAGCTCAAGATCAGGAGCCCTCCATTGGTTTCTTCTCTGTCTCCAACGAAAGCCAAGATGTCACCGAAGATGTCAACTGCCTCGAAACTTCGCAGGTCATTTTCTCCTTCGAGATTGGCAACTAGGTTGGTGTCTCCATTGAAGAGCAGAAAGAGCTTGCAGAAGAGTAGCGAGGGAGGACTAGTAATGCCTGGTTTGAAACAGCGTCCAATGTCCTCGATTCCAATGGGAATTTCAGCTCGGAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

41.48

Weight (kDa)

11.73

Isoelectric Point (pI)

80.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	942
AccB7I	CCANNNNNTGG	1 cut(s)	752
AciI	CCGC	3 cut(s)	132, 797, 821
AclWI	GGATC	2 cut(s)	44, 572
AcsI	RAATTY	4 cut(s)	336, 836, 1089, 1104
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	2 cut(s)	119, 136
AfiI	CCNNNNNNNGG	2 cut(s)	752, 883
AgsI	TTSAA	3 cut(s)	574, 1000, 1057
AhlI	ACTAGT	1 cut(s)	1039
AjnI	CCWGG	2 cut(s)	560, 1048
AjuI	GAANNNNNNNTTGG	2 cut(s)	1075, 1107
AluBI	AGCT	5 cut(s)	112, 472, 862, 1014, 1097
AluI	AGCT	5 cut(s)	112, 472, 862, 1014, 1097
Alw21I	GWGCWC	2 cut(s)	176, 474
Alw26I	GTCTC	6 cut(s)	164, 513, 583, 645, 903, 996
AlwI	GGATC	2 cut(s)	44, 572
AlwNI	CAGNNNCTG	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	1 cut(s)	653
ApeKI	GCWGC	4 cut(s)	112, 301, 374, 718
ApoI	RAATTY	4 cut(s)	336, 836, 1089, 1104
ArsI	GACNNNNNNTTYG	2 cut(s)	623, 655
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	5 cut(s)	85, 573, 735, 837, 912
AsuII	TTCGAA	1 cut(s)	833
AvaI	CYCGRG	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	265
BaeI	ACNNNNGTAYC	2 cut(s)	126, 159
BanII	GRGCYC	3 cut(s)	474, 556, 878
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	2 cut(s)	176, 474
BbvI	GCAGC	4 cut(s)	99, 288, 386, 730
BccI	CCATC	1 cut(s)	758
BciT130I	CCWGG	2 cut(s)	562, 1050
BclI	TGATCA	1 cut(s)	810
BcoDI	GTCTC	6 cut(s)	164, 513, 583, 645, 903, 996
BcuI	ACTAGT	1 cut(s)	1039
BfaI	CTAG	4 cut(s)	195, 243, 981, 1040
BfmI	CTRYAG	2 cut(s)	113, 730
BfuAI	ACCTGC	1 cut(s)	942
BisI	GCNGC	4 cut(s)	113, 302, 375, 719
BlsI	GCNGC	4 cut(s)	114, 303, 376, 720
Bme1390I	CCNGG	2 cut(s)	562, 1050
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	2 cut(s)	267, 875
BmrFI	CCNGG	2 cut(s)	562, 1050
BmsI	GCATC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	417
BplI	GAGNNNNNCTC	4 cut(s)	144, 176, 171, 203
BpmI	CTGGAG	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	833
BpuEI	CTTGAG	1 cut(s)	848
BsaI	GGTCTC	1 cut(s)	583
BsaJI	CCNNGG	2 cut(s)	167, 656
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 1026, 1056
Bsc4I	CCNNNNNNNGG	2 cut(s)	752, 883
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	562, 1050
BseDI	CCNNGG	2 cut(s)	167, 656
BseLI	CCNNNNNNNGG	2 cut(s)	752, 883
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	5 cut(s)	76, 175, 202, 487, 728
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	4 cut(s)	99, 288, 386, 730
BshFI	GGCC	1 cut(s)	655
BsiHKAI	GWGCWC	2 cut(s)	176, 474
BsiHKCI	CYCGRG	1 cut(s)	177
BslFI	GGGAC	4 cut(s)	235, 251, 514, 802
BslI	CCNNNNNNNGG	2 cut(s)	752, 883
BsmAI	GTCTC	6 cut(s)	164, 513, 583, 645, 903, 996
BsmFI	GGGAC	4 cut(s)	235, 251, 514, 802
BsnI	GGCC	1 cut(s)	655
Bso31I	GGTCTC	1 cut(s)	583
BsoBI	CYCGRG	1 cut(s)	177
Bsp119I	TTCGAA	1 cut(s)	833
Bsp1286I	GDGCHC	4 cut(s)	176, 474, 556, 878
Bsp143I	GATC	6 cut(s)	49, 521, 564, 740, 810, 867
Bsp19I	CCATGG	1 cut(s)	656
BspACI	CCGC	3 cut(s)	132, 797, 821
BspANI	GGCC	1 cut(s)	655
BspCNI	CTCAG	5 cut(s)	75, 174, 201, 486, 727
BspLI	GGNNCC	2 cut(s)	267, 875
BspMAI	CTGCAG	2 cut(s)	117, 734
BspMI	ACCTGC	1 cut(s)	942
BspPI	GGATC	2 cut(s)	44, 572
BspQI	GCTCTTC	1 cut(s)	995
BspT104I	TTCGAA	1 cut(s)	833
BspTNI	GGTCTC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	167, 656
BssMI	GATC	6 cut(s)	49, 521, 564, 740, 810, 867
BssT1I	CCWWGG	2 cut(s)	167, 656
Bst2UI	CCWGG	2 cut(s)	562, 1050
Bst4CI	ACNGT	3 cut(s)	73, 124, 328
Bst6I	CTCTTC	3 cut(s)	60, 995, 1016
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstBI	TTCGAA	1 cut(s)	833
BstC8I	GCNNGC	3 cut(s)	306, 349, 1016
BstDEI	CTNAG	5 cut(s)	62, 161, 188, 473, 714
BstDSI	CCRYGG	1 cut(s)	656
BstKTI	GATC	6 cut(s)	52, 524, 567, 743, 813, 870
BstMAI	GTCTC	6 cut(s)	164, 513, 583, 645, 903, 996
BstMBI	GATC	6 cut(s)	49, 521, 564, 740, 810, 867
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 171, 310, 1011
BstNI	CCWGG	2 cut(s)	562, 1050
BstSCI	CCNGG	2 cut(s)	560, 1048
BstSFI	CTRYAG	2 cut(s)	113, 730
BstV1I	GCAGC	4 cut(s)	99, 288, 386, 730
BstV2I	GAAGAC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	655
BtgI	CCRYGG	1 cut(s)	656
BveI	ACCTGC	1 cut(s)	942
Cac8I	GCNNGC	3 cut(s)	306, 349, 1016
CaiI	CAGNNNCTG	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	1052
Csp6I	GTAC	2 cut(s)	118, 135
CviAII	CATG	2 cut(s)	94, 657
CviQI	GTAC	2 cut(s)	118, 135
DdeI	CTNAG	5 cut(s)	62, 161, 188, 473, 714
DpnI	GATC	6 cut(s)	51, 523, 566, 742, 812, 869
DpnII	GATC	6 cut(s)	49, 521, 564, 740, 810, 867
Eam1104I	CTCTTC	3 cut(s)	60, 995, 1016
EarI	CTCTTC	3 cut(s)	60, 995, 1016
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	167, 656
Eco24I	GRGCYC	3 cut(s)	474, 556, 878
Eco31I	GGTCTC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	472
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	560, 1048
EcoT14I	CCWWGG	2 cut(s)	167, 656
EcoT22I	ATGCAT	1 cut(s)	95
EcoT38I	GRGCYC	3 cut(s)	474, 556, 878
ErhI	CCWWGG	2 cut(s)	167, 656
FaeI	CATG	2 cut(s)	97, 660
FaiI	YATR	4 cut(s)	95, 602, 658, 792
FaqI	GGGAC	4 cut(s)	235, 251, 514, 802
FatI	CATG	2 cut(s)	93, 656
FauI	CCCGC	1 cut(s)	828
FbaI	TGATCA	1 cut(s)	810
Fnu4HI	GCNGC	4 cut(s)	113, 302, 375, 719
FriOI	GRGCYC	3 cut(s)	474, 556, 878
Fsp4HI	GCNGC	4 cut(s)	113, 302, 375, 719
FspBI	CTAG	4 cut(s)	195, 243, 981, 1040
GluI	GCNGC	4 cut(s)	113, 302, 375, 719
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	655
HgaI	GACGC	1 cut(s)	1052
Hin1II	CATG	2 cut(s)	97, 660
HincII	GTYRAC	1 cut(s)	933
HindII	GTYRAC	1 cut(s)	933
HinfI	GANTC	5 cut(s)	157, 527, 707, 787, 1078
HphI	GGTGA	5 cut(s)	85, 573, 735, 837, 912
Hpy166II	GTNNAC	3 cut(s)	120, 209, 933
Hpy188I	TCNGA	9 cut(s)	65, 203, 332, 409, 476, 526, 645, 706, 1101
Hpy188III	TCNNGA	7 cut(s)	47, 150, 190, 808, 865, 871, 969
Hpy8I	GTNNAC	3 cut(s)	120, 209, 933
Hpy99I	CGWCG	1 cut(s)	786
HpyAV	CCTTC	6 cut(s)	73, 484, 834, 852, 858, 975
HpyCH4III	ACNGT	3 cut(s)	73, 124, 328
HpyCH4V	TGCA	9 cut(s)	93, 106, 115, 272, 278, 308, 359, 732, 1018
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 171, 310, 1011
HpyF3I	CTNAG	5 cut(s)	62, 161, 188, 473, 714
Hsp92II	CATG	2 cut(s)	97, 660
Ksp22I	TGATCA	1 cut(s)	810
Kzo9I	GATC	6 cut(s)	49, 521, 564, 740, 810, 867
LguI	GCTCTTC	1 cut(s)	995
LmnI	GCTCC	3 cut(s)	109, 171, 873
Lsp1109I	GCAGC	4 cut(s)	99, 288, 386, 730
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	4 cut(s)	195, 243, 981, 1040
MaeIII	GTNAC	1 cut(s)	918
MalI	GATC	6 cut(s)	51, 523, 566, 742, 812, 869
MboI	GATC	6 cut(s)	49, 521, 564, 740, 810, 867
MboII	GAAGA	9 cut(s)	47, 88, 422, 495, 702, 882, 937, 1012, 1033
MhlI	GDGCHC	4 cut(s)	176, 474, 556, 878
MluCI	AATT	5 cut(s)	336, 568, 836, 1089, 1104
MlyI	GAGTC	2 cut(s)	166, 536
MmeI	TCCRAC	3 cut(s)	310, 571, 926
Mph1103I	ATGCAT	1 cut(s)	95
MseI	TTAA	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	562, 1050
MvaI	CCWGG	2 cut(s)	562, 1050
MwoI	GCNNNNNNNGC	4 cut(s)	112, 171, 310, 1011
NcoI	CCATGG	1 cut(s)	656
NdeII	GATC	6 cut(s)	49, 521, 564, 740, 810, 867
NlaIII	CATG	2 cut(s)	97, 660
NlaIV	GGNNCC	2 cut(s)	267, 875
NmuCI	GTSAC	1 cut(s)	918
NsiI	ATGCAT	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	833
PaeR7I	CTCGAG	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	995
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PfeI	GAWTC	3 cut(s)	707, 787, 1078
PflMI	CCANNNNNTGG	1 cut(s)	752
PfoI	TCCNGGA	1 cut(s)	560
PkrI	GCNGC	4 cut(s)	114, 303, 376, 720
PleI	GAGTC	2 cut(s)	165, 535
PpsI	GAGTC	2 cut(s)	165, 535
PpuMI	RGGWCCY	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	560, 1048
PspGI	CCWGG	2 cut(s)	560, 1048
PspN4I	GGNNCC	2 cut(s)	267, 875
PspPI	GGNCC	1 cut(s)	265
PspPPI	RGGWCCY	1 cut(s)	265
PspXI	VCTCGAGB	1 cut(s)	177
PstI	CTGCAG	2 cut(s)	117, 734
PstNI	CAGNNNCTG	1 cut(s)	112
RsaI	GTAC	2 cut(s)	119, 136
RsaNI	GTAC	2 cut(s)	118, 135
SacI	GAGCTC	1 cut(s)	474
SapI	GCTCTTC	1 cut(s)	995
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	4 cut(s)	113, 302, 375, 719
Sau3AI	GATC	6 cut(s)	49, 521, 564, 740, 810, 867
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	2 cut(s)	166, 536
ScrFI	CCNGG	2 cut(s)	562, 1050
SduI	GDGCHC	4 cut(s)	176, 474, 556, 878
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	2 cut(s)	113, 730
Sfr274I	CTCGAG	1 cut(s)	177
SfuI	TTCGAA	1 cut(s)	833
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	177, 863
SmoI	CTYRAG	2 cut(s)	177, 863
SpeI	ACTAGT	1 cut(s)	1039
Sse9I	AATT	5 cut(s)	336, 568, 836, 1089, 1104
SsiI	CCGC	3 cut(s)	132, 797, 821
SspMI	CTAG	4 cut(s)	195, 243, 981, 1040
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	2 cut(s)	560, 1048
StyI	CCWWGG	2 cut(s)	167, 656
TaaI	ACNGT	3 cut(s)	73, 124, 328
TaqI	TCGA	7 cut(s)	48, 178, 520, 833, 941, 968, 1076
TasI	AATT	5 cut(s)	336, 568, 836, 1089, 1104
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	3 cut(s)	707, 787, 1078
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	918
TseI	GCWGC	4 cut(s)	112, 301, 374, 718
Tsp45I	GTSAC	1 cut(s)	918
TspDTI	ATGAA	1 cut(s)	779
TspGWI	ACGGA	1 cut(s)	799
Van91I	CCANNNNNTGG	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	4 cut(s)	336, 836, 1089, 1104
XhoI	CTCGAG	1 cut(s)	177
XspI	CTAG	4 cut(s)	195, 243, 981, 1040
Zsp2I	ATGCAT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.