Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009453

Physical Location & Seq

Genomic Coordinates Forward (+)

21986121 .. 21988101

Gene Structure 1981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTTGCAAAAACCCCACCAGAGCAGAGGAAAATGGTAGCCCCTCTCAATCCTCTTCTCCTCAGAGAAACAGTGAAGAAGGTGGATAGATGTATGGCTCGGTTGCAGGAGCTGCAGTACACAGTTTCGGGCGGTACGAAGGTGATCTCAGGAGTGAGTCTCAGCCCTCGGAGTACTAGAGGCTATCTCAGGACTAGCCTCCGATGCAAACAAGAAACTGCAAGGATTAAAGGCTCAGCCACTAGAAAATCTCCTGTTGGCAAGTTTCCAGCAAAGGCAGGAGGGGAGTGGCAGAGAATGTCCTTGCCGGCAATGCTGGTCGGTGAAACCGTCGGAGAAATTCTACAAGCAAGCCAATTTGCAAGAGAAATAATAGCAGCAATTGGCAACAAAACAAAGAAAACCACTTCAGAAGACCCCAAAACCCCAATGACACAAGGGAAACAAAGGCAGAACCCTGAAAACACAGAGCTCAGGGCCAGAAGAAAGAAGGAGAAGCACAACAAGTCTCAATCCACTCGATCAGAATCCGGTTCCCCGGTACTGCAACGGGCTCGTTCCCGGATCAATTTCAAGGTCTCACCTCCACACAAGAGAGAAATGGAGAAAGAAAACAACAGATACGTGGCAAACAGAGTATCTCCGAAAAATAGGCCTTGGGCTAAAAAAAGTGTGTTGTTTCCCAACCCTGTGTTTTCGGCTTCAGATTCTTCTCAGCAGCAGAAGTTCTGCAGAACAAGATCACCGGTCATTGGCAGAAACGATTGTAACAATGATAGGCCAAGGATTCAGACTCCGCACAAGTTCCTGATCAAGTCCCCGCCTTCTGCTTCGAAGTTTCCTTCACCTTCCAAGTTTCAGATCAAGATCAAGAGCCCTCCATTGGTTTCTTCTCTGTCTCCAACGAAAGCCAAGAAGTCACCGAAGATGTCAACTGCTTCAAAACTTCGCAGGTCATTTTCGCCGTCAAGATTGGCAACCAGGTTGGTGTCACCATTGAAGAGCAGAAAGAGTGTGCAGAAGAGTAGTGAGGGAGCACTATTAATGCATGGTTTGAAACAGCGTCCGACTTCCTCAGTGCCATTGGGACTTTCAGCTCGGAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0000912 GO:0000914 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005875 GO:0007049 GO:0008150 GO:0009574 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051301 GO:0061640 GO:0071840 GO:1902407 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

41.15

Weight (kDa)

11.47

Isoelectric Point (pI)

73.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05330
fragaria_vesca	FvH4_6g05820 FvH4_6g05820
malus_domestica	MD00G1120700.v1.1 MD02G1275700.v1.1 MD04G1205400.v1.1 MD12G1219500.v1.1
prunus_persica	Prupe.6G326100_v2.0.a1
pyrus_communis	pycom04g18170 pycom12g20500
rosa_chinensis	RchiOBHm_Chr3g0454731
rosa_laevigata	RLG00000025420
rosa_multiflora	Rmu_co8054938.1_g000001 Rmu_sc0001792.1_g000021
rosa_roxburghii	Rroxscaffold_6G00424810
rosa_rugosa	Rorug03G0002000
rosa_samantha	Rh3AG062000 Rh3BG063900 Rh3CG062800 Rh3DG063500 Rh3DG063600
rosa_wichuraiana	Rw3G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	942
AciI	CCGC	3 cut(s)	132, 797, 821
AclWI	GGATC	1 cut(s)	572
AcsI	RAATTY	2 cut(s)	339, 1104
AcuI	CTGAAG	2 cut(s)	393, 687
AfaI	GTAC	4 cut(s)	119, 136, 175, 543
AfiI	CCNNNNNNNGG	2 cut(s)	752, 883
AgeI	ACCGGT	1 cut(s)	745
AgsI	TTSAA	4 cut(s)	574, 942, 1000, 1057
AjnI	CCWGG	1 cut(s)	980
AluBI	AGCT	3 cut(s)	112, 472, 1097
AluI	AGCT	3 cut(s)	112, 472, 1097
Alw21I	GWGCWC	2 cut(s)	474, 1039
Alw26I	GTCTC	4 cut(s)	164, 513, 583, 903
AlwI	GGATC	1 cut(s)	572
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	3 cut(s)	477, 653, 779
ApeKI	GCWGC	3 cut(s)	112, 377, 718
ApoI	RAATTY	2 cut(s)	339, 1104
AseI	ATTAAT	1 cut(s)	1043
AsiGI	ACCGGT	1 cut(s)	745
AspS9I	GGNCC	1 cut(s)	477
AsuC2I	CCSGG	2 cut(s)	539, 562
AsuHPI	GGTGA	7 cut(s)	154, 335, 573, 735, 837, 912, 984
AsuII	TTCGAA	1 cut(s)	833
BaeI	ACNNNNGTAYC	2 cut(s)	126, 159
BanII	GRGCYC	3 cut(s)	474, 556, 878
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	2 cut(s)	474, 1039
BbvI	GCAGC	3 cut(s)	99, 389, 730
BceAI	ACGGC	1 cut(s)	949
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	1 cut(s)	982
BclI	TGATCA	1 cut(s)	810
BcnI	CCSGG	2 cut(s)	539, 562
BcoDI	GTCTC	4 cut(s)	164, 513, 583, 903
BfaI	CTAG	3 cut(s)	177, 195, 243
BfmI	CTRYAG	2 cut(s)	113, 730
BfuAI	ACCTGC	1 cut(s)	942
BisI	GCNGC	3 cut(s)	113, 378, 719
BlpI	GCTNAGC	1 cut(s)	235
BlsI	GCNGC	3 cut(s)	114, 379, 720
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	3 cut(s)	539, 562, 982
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	3 cut(s)	539, 562, 982
BmsI	GCATC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	420
BplI	GAGNNNNNCTC	4 cut(s)	144, 176, 171, 203
Bpu10I	CCTNAGC	1 cut(s)	473
Bpu1102I	GCTNAGC	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	833
BpuMI	CCSGG	2 cut(s)	539, 562
BsaAI	YACGTR	1 cut(s)	625
BsaBI	GATNNNNATC	2 cut(s)	526, 866
BsaI	GGTCTC	1 cut(s)	583
BsaJI	CCNNGG	4 cut(s)	167, 537, 656, 782
BsaWI	WCCGGW	2 cut(s)	530, 745
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	752, 883
Bse118I	RCCGGY	2 cut(s)	307, 745
Bse3DI	GCAATG	1 cut(s)	318
Bse8I	GATNNNNATC	2 cut(s)	526, 866
BseBI	CCWGG	1 cut(s)	982
BseDI	CCNNGG	4 cut(s)	167, 537, 656, 782
BseJI	GATNNNNATC	2 cut(s)	526, 866
BseLI	CCNNNNNNNGG	2 cut(s)	752, 883
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	8 cut(s)	76, 162, 175, 202, 249, 487, 728, 1089
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	3 cut(s)	99, 389, 730
BsgI	GTGCAG	1 cut(s)	1037
BshFI	GGCC	3 cut(s)	479, 655, 781
BshTI	ACCGGT	1 cut(s)	745
BsiHKAI	GWGCWC	2 cut(s)	474, 1039
BsiSI	CCGG	5 cut(s)	308, 531, 539, 562, 746
BslFI	GGGAC	2 cut(s)	802, 1101
BslI	CCNNNNNNNGG	2 cut(s)	752, 883
BsmAI	GTCTC	4 cut(s)	164, 513, 583, 903
BsmFI	GGGAC	2 cut(s)	802, 1101
BsnI	GGCC	3 cut(s)	479, 655, 781
Bso31I	GGTCTC	1 cut(s)	583
Bsp119I	TTCGAA	1 cut(s)	833
Bsp1286I	GDGCHC	4 cut(s)	474, 556, 878, 1039
Bsp143I	GATC	7 cut(s)	144, 521, 564, 740, 810, 861, 867
Bsp1720I	GCTNAGC	1 cut(s)	235
BspACI	CCGC	3 cut(s)	132, 797, 821
BspANI	GGCC	3 cut(s)	479, 655, 781
BspCNI	CTCAG	8 cut(s)	75, 161, 174, 201, 248, 486, 727, 1088
BspLI	GGNNCC	1 cut(s)	535
BspMAI	CTGCAG	2 cut(s)	117, 734
BspMI	ACCTGC	1 cut(s)	942
BspPI	GGATC	1 cut(s)	572
BspQI	GCTCTTC	1 cut(s)	995
BspT104I	TTCGAA	1 cut(s)	833
BspTNI	GGTCTC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	2 cut(s)	307, 745
BssAI	RCCGGY	2 cut(s)	307, 745
BssECI	CCNNGG	4 cut(s)	167, 537, 656, 782
BssMI	GATC	7 cut(s)	144, 521, 564, 740, 810, 861, 867
BssT1I	CCWWGG	2 cut(s)	656, 782
Bst2UI	CCWGG	1 cut(s)	982
Bst4CI	ACNGT	3 cut(s)	73, 124, 331
Bst6I	CTCTTC	3 cut(s)	60, 995, 1016
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstBAI	YACGTR	1 cut(s)	625
BstBI	TTCGAA	1 cut(s)	833
BstC8I	GCNNGC	2 cut(s)	309, 352
BstDEI	CTNAG	8 cut(s)	62, 148, 161, 188, 235, 473, 714, 1075
BstKTI	GATC	7 cut(s)	147, 524, 567, 743, 813, 864, 870
BstMAI	GTCTC	4 cut(s)	164, 513, 583, 903
BstMBI	GATC	7 cut(s)	144, 521, 564, 740, 810, 861, 867
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 204, 313
BstNI	CCWGG	1 cut(s)	982
BstSCI	CCNGG	3 cut(s)	537, 560, 980
BstSFI	CTRYAG	2 cut(s)	113, 730
BstV1I	GCAGC	3 cut(s)	99, 389, 730
BstV2I	GAAGAC	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	479, 655, 781
BtsIMutI	CAGTG	2 cut(s)	78, 1083
BveI	ACCTGC	1 cut(s)	942
Cac8I	GCNNGC	2 cut(s)	309, 352
CaiI	CAGNNNCTG	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	307, 745
Cfr13I	GGNCC	1 cut(s)	477
CseI	GACGC	1 cut(s)	1052
CsiI	ACCWGGT	1 cut(s)	980
Csp6I	GTAC	4 cut(s)	118, 135, 174, 542
CspAI	ACCGGT	1 cut(s)	745
CviAII	CATG	1 cut(s)	1049
CviQI	GTAC	4 cut(s)	118, 135, 174, 542
DdeI	CTNAG	8 cut(s)	62, 148, 161, 188, 235, 473, 714, 1075
DpnI	GATC	7 cut(s)	146, 523, 566, 742, 812, 863, 869
DpnII	GATC	7 cut(s)	144, 521, 564, 740, 810, 861, 867
Eam1104I	CTCTTC	3 cut(s)	60, 995, 1016
EarI	CTCTTC	3 cut(s)	60, 995, 1016
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	656, 782
Eco147I	AGGCCT	1 cut(s)	655
Eco24I	GRGCYC	3 cut(s)	474, 556, 878
Eco31I	GGTCTC	1 cut(s)	583
Eco53kI	GAGCTC	1 cut(s)	472
Eco57I	CTGAAG	2 cut(s)	393, 687
EcoICRI	GAGCTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	980
EcoT14I	CCWWGG	2 cut(s)	656, 782
EcoT22I	ATGCAT	1 cut(s)	1050
EcoT38I	GRGCYC	3 cut(s)	474, 556, 878
ErhI	CCWWGG	2 cut(s)	656, 782
FaeI	CATG	1 cut(s)	1052
FaiI	YATR	2 cut(s)	95, 1050
FaqI	GGGAC	2 cut(s)	802, 1101
FatI	CATG	1 cut(s)	1048
FauI	CCCGC	1 cut(s)	828
FbaI	TGATCA	1 cut(s)	810
Fnu4HI	GCNGC	3 cut(s)	113, 378, 719
FriOI	GRGCYC	3 cut(s)	474, 556, 878
Fsp4HI	GCNGC	3 cut(s)	113, 378, 719
FspBI	CTAG	3 cut(s)	177, 195, 243
GluI	GCNGC	3 cut(s)	113, 378, 719
HaeIII	GGCC	3 cut(s)	479, 655, 781
HapII	CCGG	5 cut(s)	308, 531, 539, 562, 746
HgaI	GACGC	1 cut(s)	1052
Hin1II	CATG	1 cut(s)	1052
HincII	GTYRAC	1 cut(s)	933
HindII	GTYRAC	1 cut(s)	933
HinfI	GANTC	5 cut(s)	157, 527, 707, 787, 793
HpaII	CCGG	5 cut(s)	308, 531, 539, 562, 746
HphI	GGTGA	7 cut(s)	154, 335, 573, 735, 837, 912, 984
Hpy166II	GTNNAC	2 cut(s)	120, 933
Hpy188III	TCNNGA	6 cut(s)	150, 190, 808, 865, 871, 969
Hpy8I	GTNNAC	2 cut(s)	120, 933
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	6 cut(s)	73, 133, 484, 834, 852, 858
HpyCH4III	ACNGT	3 cut(s)	73, 124, 331
HpyCH4IV	ACGT	1 cut(s)	624
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 204, 313
HpyF3I	CTNAG	8 cut(s)	62, 148, 161, 188, 235, 473, 714, 1075
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	1 cut(s)	1052
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	810
Kzo9I	GATC	7 cut(s)	144, 521, 564, 740, 810, 861, 867
LguI	GCTCTTC	1 cut(s)	995
LmnI	GCTCC	2 cut(s)	109, 1034
Lsp1109I	GCAGC	3 cut(s)	99, 389, 730
LweI	GCATC	1 cut(s)	194
MabI	ACCWGGT	1 cut(s)	980
MaeI	CTAG	3 cut(s)	177, 195, 243
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	3 cut(s)	767, 918, 990
MalI	GATC	7 cut(s)	146, 523, 566, 742, 812, 863, 869
MboI	GATC	7 cut(s)	144, 521, 564, 740, 810, 861, 867
MboII	GAAGA	9 cut(s)	47, 88, 425, 495, 702, 882, 937, 1012, 1033
MfeI	CAATTG	1 cut(s)	381
MhlI	GDGCHC	4 cut(s)	474, 556, 878, 1039
MluCI	AATT	5 cut(s)	339, 356, 381, 568, 1104
MlyI	GAGTC	2 cut(s)	166, 787
MmeI	TCCRAC	3 cut(s)	313, 926, 1091
Mph1103I	ATGCAT	1 cut(s)	1050
MroNI	GCCGGC	1 cut(s)	307
MseI	TTAA	2 cut(s)	228, 1043
MspI	CCGG	5 cut(s)	308, 531, 539, 562, 746
MspR9I	CCNGG	3 cut(s)	539, 562, 982
MunI	CAATTG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	982
MwoI	GCNNNNNNNGC	3 cut(s)	112, 204, 313
NaeI	GCCGGC	1 cut(s)	309
NciI	CCSGG	2 cut(s)	539, 562
NdeII	GATC	7 cut(s)	144, 521, 564, 740, 810, 861, 867
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	1052
NlaIV	GGNNCC	1 cut(s)	535
NmuCI	GTSAC	2 cut(s)	918, 990
NsiI	ATGCAT	1 cut(s)	1050
NspV	TTCGAA	1 cut(s)	833
PceI	AGGCCT	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	995
PcsI	WCGNNNNNNNCGW	2 cut(s)	134, 327
PdiI	GCCGGC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	527, 707, 787
PfoI	TCCNGGA	1 cut(s)	560
PinAI	ACCGGT	1 cut(s)	745
PkrI	GCNGC	3 cut(s)	114, 379, 720
PleI	GAGTC	2 cut(s)	165, 787
PpsI	GAGTC	2 cut(s)	165, 787
Ppu21I	YACGTR	1 cut(s)	625
PshBI	ATTAAT	1 cut(s)	1043
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	980
PspGI	CCWGG	1 cut(s)	980
PspN4I	GGNNCC	1 cut(s)	535
PspPI	GGNCC	1 cut(s)	477
PstI	CTGCAG	2 cut(s)	117, 734
PstNI	CAGNNNCTG	1 cut(s)	112
RsaI	GTAC	4 cut(s)	119, 136, 175, 543
RsaNI	GTAC	4 cut(s)	118, 135, 174, 542
SacI	GAGCTC	1 cut(s)	474
SapI	GCTCTTC	1 cut(s)	995
SaqAI	TTAA	2 cut(s)	228, 1043
SatI	GCNGC	3 cut(s)	113, 378, 719
Sau3AI	GATC	7 cut(s)	144, 521, 564, 740, 810, 861, 867
Sau96I	GGNCC	1 cut(s)	477
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	2 cut(s)	166, 787
ScrFI	CCNGG	3 cut(s)	539, 562, 982
SduI	GDGCHC	4 cut(s)	474, 556, 878, 1039
SexAI	ACCWGGT	1 cut(s)	980
SfaNI	GCATC	1 cut(s)	194
SfcI	CTRYAG	2 cut(s)	113, 730
SfuI	TTCGAA	1 cut(s)	833
Sse9I	AATT	5 cut(s)	339, 356, 381, 568, 1104
SseBI	AGGCCT	1 cut(s)	655
SsiI	CCGC	3 cut(s)	132, 797, 821
SspMI	CTAG	3 cut(s)	177, 195, 243
SstI	GAGCTC	1 cut(s)	474
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	3 cut(s)	537, 560, 980
StyI	CCWWGG	2 cut(s)	656, 782
TaaI	ACNGT	3 cut(s)	73, 124, 331
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	2 cut(s)	520, 833
TasI	AATT	5 cut(s)	339, 356, 381, 568, 1104
TatI	WGTACW	2 cut(s)	117, 173
TfiI	GAWTC	3 cut(s)	527, 707, 787
Tru1I	TTAA	2 cut(s)	228, 1043
Tru9I	TTAA	2 cut(s)	228, 1043
TscAI	CASTG	2 cut(s)	78, 1083
TseFI	GTSAC	2 cut(s)	918, 990
TseI	GCWGC	3 cut(s)	112, 377, 718
Tsp45I	GTSAC	2 cut(s)	918, 990
TspRI	CASTG	2 cut(s)	78, 1083
VspI	ATTAAT	1 cut(s)	1043
XapI	RAATTY	2 cut(s)	339, 1104
XspI	CTAG	3 cut(s)	177, 195, 243
ZrmI	AGTACT	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.