Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006545

Physical Location & Seq

Genomic Coordinates Forward (+)

1707797 .. 1710038

Gene Structure 2242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTTCGAGCAACACGACTACTGGGGTTGATAATACGTTTAGAAAGAAGTTTGATGTGGAAGAGTTTAAGGAGCGTGCTCGTGAACGCGAAAAGAAGGAATCGGATCGGTCTAAATCTCGGTCCAAAGGTCCTCCTGTGCAAAGAGCCCCTTTGAAGCATAGAGATTATCATGTAGACCTAGAATCTCGTCTGGGCAAGACACAGGTCGTTACACCGGTAGCGCCTCTAAGTCAGCAGGCTGGTTATTTCTGTCGCGTTTGTGATTGTGTTGTTAAAGATTCGGCAAACTACTTGGATCACATAAATGGGAAAAAACATCAAAGGGCATTGGGGATGTCTATGCGGGTGGAGAGATCGTCACTTGAACAAGTCCAAGAGCGGTTCGAGGTTTTAAAGAAGCGGAAAGCGCCAGGAACTTTCACAGAACAAGATCTGGACGAACGCATCCGAAAACAGCAAGAAGAAGAGGAAGAACTAAAAAGGCAGCGTAGAGAGAAAAAGAAAGAGAAGAAGAAAGGGAAGGTGGTGGAAGAAGAGCCTGAGATGGATCCTGAGGTTGCAGAGATGATGGGATTTGGGGGCTTTGGATCTTCAAAAAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF4378 VARLMGL zf-C2H2_jaz zf-met

Protein Analysis

202

Amino Acids

23.44

Weight (kDa)

9.4

Isoelectric Point (pI)

57.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-met	PF12874	83 - 107	5.1e-07	Zinc-finger of C2H2 type
zf-C2H2_jaz	PF12171	83 - 108	7.4e-06	Zinc-finger double-stranded RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05760 AT3G05760
fragaria_vesca	FvH4_6g07240 FvH4_6g07240
malus_domestica	MD04G1195100.v1.1 MD12G1207200.v1.1
prunus_persica	Prupe.6G314900_v2.0.a1
pyrus_communis	pycom12g19500
rosa_chinensis	RchiOBHm_Chr3g0456881 RchiOBHm_Chr7g0179971
rosa_laevigata	RLG00000005306 RLG00000025272
rosa_multiflora	Rmu_sc0019791.1_g000004 Rmu_sc0021305.1_g000001 Rmu_ssc0000119.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273270 Rroxscaffold_6G00422420
rosa_rugosa	Rorug03G0016500
rosa_samantha	Rh3AG076900 Rh3BG078700 Rh3CG078500 Rh7BG029200 Rh7CG030900 Rh7DG030200
rosa_wichuraiana	Rw3G006600 Rw7G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	90, 258
AciI	CCGC	3 cut(s)	346, 382, 403
AclWI	GGATC	5 cut(s)	114, 306, 545, 558, 598
AgeI	ACCGGT	1 cut(s)	217
AgsI	TTSAA	3 cut(s)	157, 368, 597
AjnI	CCWGG	1 cut(s)	412
Alw21I	GWGCWC	1 cut(s)	82
AlwI	GGATC	5 cut(s)	114, 306, 545, 558, 598
ApeKI	GCWGC	1 cut(s)	487
AsiGI	ACCGGT	1 cut(s)	217
AspLEI	GCGC	2 cut(s)	226, 412
AspS9I	GGNCC	2 cut(s)	123, 131
AvaII	GGWCC	2 cut(s)	123, 131
AxyI	CCTNAGG	1 cut(s)	555
BamHI	GGATCC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	2 cut(s)	541, 565
BciT130I	CCWGG	1 cut(s)	414
BfaI	CTAG	1 cut(s)	182
BfoI	RGCGCY	2 cut(s)	227, 413
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	489
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	2 cut(s)	123, 131
BmgT120I	GGNCC	2 cut(s)	123, 131
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	1 cut(s)	414
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	456
BmuI	ACTGGG	1 cut(s)	33
BoxI	GACNNNNGTC	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	28
Bse21I	CCTNAGG	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	414
BseGI	GGATG	2 cut(s)	342, 447
BseMII	CTCAG	2 cut(s)	534, 546
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	499
Bsh1236I	CGCG	2 cut(s)	90, 258
BshTI	ACCGGT	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	82, 151
Bsp143I	GATC	6 cut(s)	106, 298, 356, 433, 550, 590
BspACI	CCGC	3 cut(s)	346, 382, 403
BspCNI	CTCAG	2 cut(s)	535, 547
BspFNI	CGCG	2 cut(s)	90, 258
BspHI	TCATGA	1 cut(s)	605
BspLI	GGNNCC	1 cut(s)	552
BspPI	GGATC	5 cut(s)	114, 306, 545, 558, 598
BspQI	GCTCTTC	1 cut(s)	531
BsrBI	CCGCTC	1 cut(s)	382
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	217
BssMI	GATC	6 cut(s)	106, 298, 356, 433, 550, 590
BssSI	CACGAG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	414
Bst6I	CTCTTC	3 cut(s)	57, 462, 531
BstC8I	GCNNGC	2 cut(s)	78, 240
BstDEI	CTNAG	3 cut(s)	230, 543, 555
BstF5I	GGATG	2 cut(s)	342, 447
BstFNI	CGCG	2 cut(s)	90, 258
BstH2I	RGCGCY	2 cut(s)	227, 413
BstHHI	GCGC	2 cut(s)	226, 412
BstKTI	GATC	6 cut(s)	109, 301, 359, 436, 553, 593
BstMBI	GATC	6 cut(s)	106, 298, 356, 433, 550, 590
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstNI	CCWGG	1 cut(s)	414
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	412
BstUI	CGCG	2 cut(s)	90, 258
BstV1I	GCAGC	1 cut(s)	499
BstX2I	RGATCY	3 cut(s)	433, 550, 590
BstYI	RGATCY	3 cut(s)	433, 550, 590
Bsu36I	CCTNAGG	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	342, 447
Cac8I	GCNNGC	2 cut(s)	78, 240
CciI	TCATGA	1 cut(s)	605
CfoI	GCGC	2 cut(s)	226, 412
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	123, 131
CspAI	ACCGGT	1 cut(s)	217
CviAII	CATG	2 cut(s)	173, 606
CviJI	RGCY	5 cut(s)	5, 149, 242, 541, 585
CviKI_1	RGCY	5 cut(s)	5, 149, 242, 541, 585
DdeI	CTNAG	3 cut(s)	230, 543, 555
DpnI	GATC	6 cut(s)	108, 300, 358, 435, 552, 592
DpnII	GATC	6 cut(s)	106, 298, 356, 433, 550, 590
DraI	TTTAAA	1 cut(s)	396
Eam1104I	CTCTTC	3 cut(s)	57, 462, 531
EarI	CTCTTC	3 cut(s)	57, 462, 531
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	2 cut(s)	123, 131
Eco81I	CCTNAGG	1 cut(s)	555
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	151
FaeI	CATG	2 cut(s)	176, 609
FaiI	YATR	5 cut(s)	162, 174, 305, 344, 607
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
FatI	CATG	2 cut(s)	172, 605
FauI	CCCGC	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	2 cut(s)	349, 434
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	488
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	2 cut(s)	225, 411
GluI	GCNGC	1 cut(s)	488
HaeII	RGCGCY	2 cut(s)	227, 413
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	2 cut(s)	226, 412
Hin1II	CATG	2 cut(s)	176, 609
Hin6I	GCGC	2 cut(s)	224, 410
HinP1I	GCGC	2 cut(s)	224, 410
HinfI	GANTC	3 cut(s)	101, 185, 281
HpaII	CCGG	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	86, 178
Hpy188I	TCNGA	2 cut(s)	106, 452
Hpy188III	TCNNGA	4 cut(s)	83, 437, 554, 606
Hpy8I	GTNNAC	2 cut(s)	86, 178
HpyAV	CCTTC	2 cut(s)	91, 517
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	142, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	3 cut(s)	230, 543, 555
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	176, 609
HspAI	GCGC	2 cut(s)	224, 410
Kzo9I	GATC	6 cut(s)	106, 298, 356, 433, 550, 590
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	1 cut(s)	456
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	211, 360
MalI	GATC	6 cut(s)	108, 300, 358, 435, 552, 592
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	6 cut(s)	106, 298, 356, 433, 550, 590
MboII	GAAGA	9 cut(s)	74, 476, 479, 485, 523, 526, 545, 548, 585
MflI	RGATCY	3 cut(s)	433, 550, 590
MhlI	GDGCHC	2 cut(s)	82, 151
MnlI	CCTC	5 cut(s)	144, 237, 382, 463, 550
MseI	TTAA	3 cut(s)	69, 276, 395
MslI	CAYNNNNRTG	1 cut(s)	306
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	2 cut(s)	90, 258
MwoI	GCNNNNNNNGC	1 cut(s)	409
NdeII	GATC	6 cut(s)	106, 298, 356, 433, 550, 590
NlaIII	CATG	2 cut(s)	176, 609
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	1 cut(s)	360
PagI	TCATGA	1 cut(s)	605
PciSI	GCTCTTC	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	101, 185, 281
PinAI	ACCGGT	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	489
PpuMI	RGGWCCY	1 cut(s)	131
PshAI	GACNNNNGTC	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	2 cut(s)	123, 131
PspPPI	RGGWCCY	1 cut(s)	131
PsuI	RGATCY	3 cut(s)	433, 550, 590
RseI	CAYNNNNRTG	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	3 cut(s)	69, 276, 395
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	6 cut(s)	106, 298, 356, 433, 550, 590
Sau96I	GGNCC	2 cut(s)	123, 131
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	2 cut(s)	82, 151
SetI	ASST	7 cut(s)	41, 133, 183, 210, 393, 528, 561
SfaNI	GCATC	1 cut(s)	456
SinI	GGWCC	2 cut(s)	123, 131
SmiMI	CAYNNNNRTG	1 cut(s)	306
SsiI	CCGC	3 cut(s)	346, 382, 403
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	412
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	8, 387
TaqII	GACCGA	2 cut(s)	99, 111
TfiI	GAWTC	3 cut(s)	101, 185, 281
Tru1I	TTAA	3 cut(s)	69, 276, 395
Tru9I	TTAA	3 cut(s)	69, 276, 395
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	487
Tsp45I	GTSAC	1 cut(s)	360
VpaK11BI	GGWCC	2 cut(s)	123, 131
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.