Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006545

Physical Location & Seq

Genomic Coordinates Forward (+)

6149935 .. 6153400

Gene Structure 3466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG076900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCTAGCAATGGGGCTGTTGGAGTAGATAATACTCATAGAAGGAAATTCGATCTTGAAGAGTATGCTGAGAAAGCCCGCGAGCGTGAAAGAAAGGAGGAGGAGGGAGCTCGTAAGTCGAAATCGAAAGGTCCTCCGGTGCAGAGGAAGCCATTGAAGCACAGGGATTATGAAGTAGACCTTGAATCTCGCTTGGGGAAAACACAGGTTGTTACTCCAATAGCACCTTTAAGCCAGCAGGCTGGATACTTTTGTTCAGTTTGTGAGTGCGTTGTAAAAGATTCTGCAAACTACTTGGATCATATCAATGGCAAAAAACGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF4378 VARLMGL zf-C2H2_jaz zf-met

Protein Analysis

108

Amino Acids

12.29

Weight (kDa)

9.19

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05760 AT3G05760
fragaria_vesca	FvH4_6g07240 FvH4_6g07240
malus_domestica	MD04G1195100.v1.1 MD12G1207200.v1.1
prunus_persica	Prupe.6G314900_v2.0.a1
pyrus_communis	pycom12g19500
rosa_chinensis	RchiOBHm_Chr3g0456881 RchiOBHm_Chr7g0179971
rosa_laevigata	RLG00000005306 RLG00000025272
rosa_multiflora	Rmu_sc0019791.1_g000004 Rmu_sc0021305.1_g000001 Rmu_ssc0000119.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273270 Rroxscaffold_6G00422420
rosa_rugosa	Rorug03G0016500
rosa_samantha	Rh3AG076900 Rh3BG078700 Rh3CG078500 Rh7BG029200 Rh7CG030900 Rh7DG030200
rosa_wichuraiana	Rw3G006600 Rw7G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	59, 157, 185
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw21I	GWGCWC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	306
ApoI	RAATTY	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	131
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	131
BaeI	ACNNNNGTAYC	2 cut(s)	238, 271
BanII	GRGCYC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	112
BciVI	GTATCC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmtI	GCTAGC	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	60
BseRI	GAGGAG	2 cut(s)	113, 116
BsgI	GTGCAG	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	52, 298
BspACI	CCGC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	81
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	16
BssMI	GATC	2 cut(s)	52, 298
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	5 cut(s)	7, 79, 83, 236, 240
BstDEI	CTNAG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	55, 301
BstMBI	GATC	2 cut(s)	52, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 148, 157
BstUI	CGCG	1 cut(s)	81
BstXI	CCANNNNNNTGG	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	239
Cac8I	GCNNGC	5 cut(s)	7, 79, 83, 236, 240
Cfr13I	GGNCC	1 cut(s)	131
CviJI	RGCY	7 cut(s)	5, 17, 77, 110, 151, 234, 242
CviKI_1	RGCY	7 cut(s)	5, 17, 77, 110, 151, 234, 242
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	54, 300
DpnII	GATC	2 cut(s)	52, 298
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	112
FaiI	YATR	5 cut(s)	39, 66, 171, 303, 323
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FauI	CCCGC	1 cut(s)	86
FblI	GTMKAC	1 cut(s)	177
FriOI	GRGCYC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	6
HapII	CCGG	1 cut(s)	137
HinfI	GANTC	2 cut(s)	185, 281
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	142, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 148, 157
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	52, 298
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	6 cut(s)	148, 150, 191, 224, 228, 248
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	54, 300
MboI	GATC	2 cut(s)	52, 298
MboII	GAAGA	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	1 cut(s)	47
MnlI	CCTC	5 cut(s)	91, 94, 97, 138, 144
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	306
MspI	CCGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	74, 148, 157
NdeII	GATC	2 cut(s)	52, 298
NheI	GCTAGC	1 cut(s)	5
PfeI	GAWTC	2 cut(s)	185, 281
PpuMI	RGGWCCY	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	131
PspPPI	RGGWCCY	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	52, 298
Sau96I	GGNCC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	6 cut(s)	112, 133, 183, 210, 229, 322
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	112
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	3 cut(s)	51, 119, 125
TasI	AATT	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	185, 281
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.