Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006545

Physical Location & Seq

Genomic Coordinates Reverse (-)

66689105 .. 66691463

Gene Structure 2359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005306

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCTCACGCTAACAGTAGTACAGTTGTAGTTGGAGTGGACAACACTCATAGAAGGAGATTCAATCTGGAAGAGTATGTGAAGCGAGCCCGCGAGCGTCAGAGACGGGAGGAGGAGGAGAGAGCTCAAAAGCTTACGAAATCGAGAGGTCCTGCGGTGCAAAGGAAGCCATTGAAGAGCAGGACCTACCAAGTGCAGAGCCGATTCGAGAAGCTGAAGAAGCAGAAAACTGATGGGGAGAGGTTGTTAACAGAGCAAGATCTTAAGGAGCGGGTGTTGAAGCAGCAGAAGGAAGAGGAGAAGAGGAAGCGCCAGCGTCGACAAAGAAAGAAAGAGAAGAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF4378 VARLMGL zf-C2H2_jaz zf-met

Protein Analysis

116

Amino Acids

14.08

Weight (kDa)

10.87

Isoelectric Point (pI)

73.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05760 AT3G05760
fragaria_vesca	FvH4_6g07240 FvH4_6g07240
malus_domestica	MD04G1195100.v1.1 MD12G1207200.v1.1
prunus_persica	Prupe.6G314900_v2.0.a1
pyrus_communis	pycom12g19500
rosa_chinensis	RchiOBHm_Chr3g0456881 RchiOBHm_Chr7g0179971
rosa_laevigata	RLG00000005306 RLG00000025272
rosa_multiflora	Rmu_sc0019791.1_g000004 Rmu_sc0021305.1_g000001 Rmu_ssc0000119.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273270 Rroxscaffold_6G00422420
rosa_rugosa	Rorug03G0016500
rosa_samantha	Rh3AG076900 Rh3BG078700 Rh3CG078500 Rh7BG029200 Rh7CG030900 Rh7DG030200
rosa_wichuraiana	Rw3G006600 Rw7G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	271
AccI	GTMKAC	1 cut(s)	319
AccII	CGCG	1 cut(s)	93
AciI	CCGC	3 cut(s)	91, 155, 271
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	22
AflII	CTTAAG	1 cut(s)	263
AgsI	TTSAA	3 cut(s)	64, 175, 280
AluBI	AGCT	3 cut(s)	125, 133, 214
AluI	AGCT	3 cut(s)	125, 133, 214
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	149, 183
AvaII	GGWCC	2 cut(s)	149, 183
BanII	GRGCYC	2 cut(s)	91, 127
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	97
BfoI	RGCGCY	1 cut(s)	313
BfrI	CTTAAG	1 cut(s)	263
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme18I	GGWCC	2 cut(s)	149, 183
BmgT120I	GGNCC	2 cut(s)	149, 183
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 260, 290
BseRI	GAGGAG	4 cut(s)	125, 128, 131, 311
BseXI	GCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	97
BsmBI	CGTCTC	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	91, 127
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	3 cut(s)	91, 155, 271
BspFNI	CGCG	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	170
BspTI	CTTAAG	1 cut(s)	263
BsrBI	CCGCTC	1 cut(s)	271
BssMI	GATC	1 cut(s)	259
Bst4CI	ACNGT	2 cut(s)	17, 25
Bst6I	CTCTTC	4 cut(s)	66, 170, 288, 296
BstAFI	CTTAAG	1 cut(s)	263
BstC8I	GCNNGC	4 cut(s)	87, 91, 95, 314
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 220
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
Cac8I	GCNNGC	4 cut(s)	87, 91, 95, 314
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	149, 183
CseI	GACGC	2 cut(s)	86, 305
Csp6I	GTAC	1 cut(s)	21
CviJI	RGCY	7 cut(s)	5, 89, 125, 133, 169, 201, 214
CviKI_1	RGCY	7 cut(s)	5, 89, 125, 133, 169, 201, 214
CviQI	GTAC	1 cut(s)	21
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	4 cut(s)	66, 170, 288, 296
EarI	CTCTTC	4 cut(s)	66, 170, 288, 296
Ecl136II	GAGCTC	1 cut(s)	125
Eco24I	GRGCYC	2 cut(s)	91, 127
Eco47I	GGWCC	2 cut(s)	149, 183
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	125
EcoO109I	RGGNCCY	2 cut(s)	149, 183
EcoT38I	GRGCYC	2 cut(s)	91, 127
Esp3I	CGTCTC	1 cut(s)	97
FaiI	YATR	2 cut(s)	51, 78
FauI	CCCGC	2 cut(s)	98, 264
FblI	GTMKAC	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	284
FriOI	GRGCYC	2 cut(s)	91, 127
Fsp4HI	GCNGC	1 cut(s)	284
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	284
HaeII	RGCGCY	1 cut(s)	313
HgaI	GACGC	2 cut(s)	86, 305
HhaI	GCGC	1 cut(s)	312
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HincII	GTYRAC	2 cut(s)	249, 320
HindII	GTYRAC	2 cut(s)	249, 320
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	60, 204
HpaI	GTTAAC	1 cut(s)	249
Hpy166II	GTNNAC	3 cut(s)	40, 249, 320
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	3 cut(s)	68, 144, 208
Hpy8I	GTNNAC	3 cut(s)	40, 249, 320
Hpy99I	CGWCG	1 cut(s)	321
HpyAV	CCTTC	2 cut(s)	48, 283
HpyCH4III	ACNGT	2 cut(s)	17, 25
HpyCH4V	TGCA	2 cut(s)	160, 196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 220
HspAI	GCGC	1 cut(s)	310
KspAI	GTTAAC	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	259
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	4 cut(s)	53, 165, 166, 326
Lsp1109I	GCAGC	1 cut(s)	295
MalI	GATC	1 cut(s)	261
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	1 cut(s)	259
MboII	GAAGA	5 cut(s)	83, 187, 229, 305, 313
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	91, 127
MluCI	AATT	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	7 cut(s)	103, 106, 109, 140, 234, 289, 297
MseI	TTAA	3 cut(s)	248, 264, 346
MspCI	CTTAAG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	166, 220
NdeII	GATC	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	60, 204
PkrI	GCNGC	1 cut(s)	285
PpuMI	RGGWCCY	2 cut(s)	149, 183
Psp124BI	GAGCTC	1 cut(s)	127
Psp5II	RGGWCCY	2 cut(s)	149, 183
PspPI	GGNCC	2 cut(s)	149, 183
PspPPI	RGGWCCY	2 cut(s)	149, 183
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	127
SalI	GTCGAC	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	170
SaqAI	TTAA	3 cut(s)	248, 264, 346
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	2 cut(s)	149, 183
SduI	GDGCHC	2 cut(s)	91, 127
SetI	ASST	6 cut(s)	127, 135, 151, 188, 216, 245
SinI	GGWCC	2 cut(s)	149, 183
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	3 cut(s)	91, 155, 271
SstI	GAGCTC	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	17, 25
TaqI	TCGA	3 cut(s)	143, 207, 319
TasI	AATT	1 cut(s)	343
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	60, 204
Tru1I	TTAA	3 cut(s)	248, 264, 346
Tru9I	TTAA	3 cut(s)	248, 264, 346
TseI	GCWGC	1 cut(s)	283
Vha464I	CTTAAG	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	149, 183
XmiI	GTMKAC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.