Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021305.1

Orthogroup ID

OG0006545

Physical Location & Seq

Genomic Coordinates Forward (+)

2204 .. 2707

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021305.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ctggaagagtatgcggagcaagcctgcgagcgtcagagacaggaggaggaggagagagctcaaaagctcaagaaatcgagaggtcctgctgtgcaaaggaagccattgaagcgcaggacctaccaagtatacctcgaatctcggctagggcaaacacaggttcttactccaacagctcctttgagcgagcaagcaggatacttgtgctcggattgtaattgcattgtaaaagactctgcaaacttcttggaccacatcaatggcaagaaacaccaaagctctgttggcatgtctacgaaggtggagcgggcgactctcgaacaggtgcagagccgattcgagaagctgaagaagcagaaaactgatggggagaggttgttaacagagcaagatcttgaggagcgggtgttgaagcagcagaaggaagaggaggagatgaagcgccagcgtcgacaaagaaagaaagagaacatgaataagagagacaatgtagtagcagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF4378 VARLMGL zf-C2H2_jaz zf-met

Protein Analysis

167

Amino Acids

19.65

Weight (kDa)

9.25

Isoelectric Point (pI)

69.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05760 AT3G05760
fragaria_vesca	FvH4_6g07240 FvH4_6g07240
malus_domestica	MD04G1195100.v1.1 MD12G1207200.v1.1
prunus_persica	Prupe.6G314900_v2.0.a1
pyrus_communis	pycom12g19500
rosa_chinensis	RchiOBHm_Chr3g0456881 RchiOBHm_Chr7g0179971
rosa_laevigata	RLG00000005306 RLG00000025272
rosa_multiflora	Rmu_sc0019791.1_g000004 Rmu_sc0021305.1_g000001 Rmu_ssc0000119.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273270 Rroxscaffold_6G00422420
rosa_rugosa	Rorug03G0016500
rosa_samantha	Rh3AG076900 Rh3BG078700 Rh3CG078500 Rh7BG029200 Rh7CG030900 Rh7DG030200
rosa_wichuraiana	Rw3G006600 Rw7G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	307, 403
AccI	GTMKAC	3 cut(s)	129, 293, 451
AciI	CCGC	3 cut(s)	14, 307, 403
AcuI	CTGAAG	1 cut(s)	368
AgsI	TTSAA	2 cut(s)	109, 412
AluBI	AGCT	5 cut(s)	59, 67, 176, 279, 346
AluI	AGCT	5 cut(s)	59, 67, 176, 279, 346
Alw21I	GWGCWC	2 cut(s)	61, 209
Alw26I	GTCTC	2 cut(s)	31, 477
ApeKI	GCWGC	1 cut(s)	415
AspLEI	GCGC	2 cut(s)	114, 444
AspS9I	GGNCC	3 cut(s)	83, 117, 250
AvaII	GGWCC	3 cut(s)	83, 117, 250
BanII	GRGCYC	1 cut(s)	61
Bbv12I	GWGCWC	2 cut(s)	61, 209
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	1 cut(s)	359
BciVI	GTATCC	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	31, 477
BfaI	CTAG	2 cut(s)	146, 502
BfoI	RGCGCY	1 cut(s)	445
BfuI	GTATCC	1 cut(s)	191
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme18I	GGWCC	3 cut(s)	83, 117, 250
BmgT120I	GGNCC	3 cut(s)	83, 117, 250
BpuEI	CTTGAG	2 cut(s)	53, 416
BsaXI	ACNNNNNCTCC	4 cut(s)	362, 392, 392, 422
BseRI	GAGGAG	6 cut(s)	59, 62, 65, 413, 443, 446
BseXI	GCAGC	1 cut(s)	427
BsgI	GTGCAG	1 cut(s)	347
BsiHKAI	GWGCWC	2 cut(s)	61, 209
BsmAI	GTCTC	2 cut(s)	31, 477
Bsp1286I	GDGCHC	2 cut(s)	61, 209
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	3 cut(s)	14, 307, 403
BsrBI	CCGCTC	2 cut(s)	307, 403
BssMI	GATC	1 cut(s)	391
BssNAI	GTATAC	1 cut(s)	130
Bst1107I	GTATAC	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	7 cut(s)	21, 25, 29, 188, 192, 309, 446
BstH2I	RGCGCY	1 cut(s)	445
BstHHI	GCGC	2 cut(s)	114, 444
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	2 cut(s)	31, 477
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 100, 109, 285, 352
BstNSI	RCATGY	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	391
BstZ17I	GTATAC	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	191
Cac8I	GCNNGC	7 cut(s)	21, 25, 29, 188, 192, 309, 446
CfoI	GCGC	2 cut(s)	114, 444
Cfr13I	GGNCC	3 cut(s)	83, 117, 250
CseI	GACGC	2 cut(s)	20, 437
CviAII	CATG	2 cut(s)	289, 472
CviJI	RGCY	9 cut(s)	23, 59, 67, 103, 145, 176, 279, 333, 346
CviKI_1	RGCY	9 cut(s)	23, 59, 67, 103, 145, 176, 279, 333, 346
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	3 cut(s)	83, 117, 250
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	59
EcoO109I	RGGNCCY	2 cut(s)	83, 117
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	2 cut(s)	292, 475
FaiI	YATR	4 cut(s)	12, 130, 290, 473
FatI	CATG	2 cut(s)	288, 471
FauI	CCCGC	2 cut(s)	300, 396
FblI	GTMKAC	3 cut(s)	129, 293, 451
Fnu4HI	GCNGC	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	2 cut(s)	146, 502
GlaI	GCGC	2 cut(s)	113, 443
GluI	GCNGC	1 cut(s)	416
HaeII	RGCGCY	1 cut(s)	445
HgaI	GACGC	2 cut(s)	20, 437
HhaI	GCGC	2 cut(s)	114, 444
Hin1II	CATG	2 cut(s)	292, 475
Hin6I	GCGC	2 cut(s)	112, 442
HinP1I	GCGC	2 cut(s)	112, 442
HincII	GTYRAC	2 cut(s)	381, 452
HindII	GTYRAC	2 cut(s)	381, 452
HinfI	GANTC	4 cut(s)	137, 233, 313, 336
HpaI	GTTAAC	1 cut(s)	381
Hpy166II	GTNNAC	4 cut(s)	130, 294, 381, 452
Hpy188I	TCNGA	2 cut(s)	36, 211
Hpy188III	TCNNGA	5 cut(s)	70, 78, 317, 340, 395
Hpy8I	GTNNAC	4 cut(s)	130, 294, 381, 452
Hpy99I	CGWCG	1 cut(s)	453
HpyAV	CCTTC	2 cut(s)	292, 415
HpyCH4V	TGCA	4 cut(s)	94, 222, 239, 328
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 100, 109, 285, 352
Hsp92II	CATG	2 cut(s)	292, 475
HspAI	GCGC	2 cut(s)	112, 442
KspAI	GTTAAC	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	4 cut(s)	16, 181, 304, 400
LpnPI	CCDG	8 cut(s)	26, 37, 99, 100, 143, 180, 308, 458
Lsp1109I	GCAGC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	146, 502
MalI	GATC	1 cut(s)	393
MbiI	CCGCTC	2 cut(s)	307, 403
MboI	GATC	1 cut(s)	391
MboII	GAAGA	3 cut(s)	17, 361, 437
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	2 cut(s)	61, 209
MluCI	AATT	1 cut(s)	217
MlyI	GAGTC	2 cut(s)	227, 307
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	9 cut(s)	37, 40, 43, 74, 143, 366, 391, 421, 424
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	1 cut(s)	258
MwoI	GCNNNNNNNGC	5 cut(s)	20, 100, 109, 285, 352
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	2 cut(s)	292, 475
NmeAIII	GCCGAG	1 cut(s)	121
NspI	RCATGY	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	137, 336
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	2 cut(s)	227, 307
PpsI	GAGTC	2 cut(s)	227, 307
PpuMI	RGGWCCY	2 cut(s)	83, 117
Psp124BI	GAGCTC	1 cut(s)	61
Psp5II	RGGWCCY	2 cut(s)	83, 117
PspPI	GGNCC	3 cut(s)	83, 117, 250
PspPPI	RGGWCCY	2 cut(s)	83, 117
PsuI	RGATCY	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	61
SalI	GTCGAC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	3 cut(s)	83, 117, 250
SchI	GAGTC	2 cut(s)	227, 307
SduI	GDGCHC	2 cut(s)	61, 209
SinI	GGWCC	3 cut(s)	83, 117, 250
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	68, 395
SmoI	CTYRAG	2 cut(s)	68, 395
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	3 cut(s)	14, 307, 403
SspMI	CTAG	2 cut(s)	146, 502
SstI	GAGCTC	1 cut(s)	61
TaqI	TCGA	5 cut(s)	77, 135, 318, 339, 451
TasI	AATT	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	137, 336
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TseI	GCWGC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	452, 488
VpaK11BI	GGWCC	3 cut(s)	83, 117, 250
XceI	RCATGY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmiI	GTMKAC	3 cut(s)	129, 293, 451
XspI	CTAG	2 cut(s)	146, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.