Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006545

Physical Location & Seq

Genomic Coordinates Forward (+)

1990708 .. 1991890

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG029200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCGTCAGAGACGGGAGGAGGAGGAGAGAGCTCAAAAGCTCACGAAATCGAGAGGTCCTGCGGTGCAAAGGAAGCCATTGAAGCGCAGGACCTACCAAGTATACCTCGAATCTCGGCTAGGGCAAACACAGGTTCTTACTCCAACAGCTCCTTTGAGCCAGCAAGCAGGATACTTGTGCTCGGATTGTAATTGCATTGTAAAAGACTCTGCAAACTTCTTGGACCACATCAATGGCAAGAAACACCAAAGCTCTGTTGGCATGTCTATGAAGGTGGAGCGGGCGACTCTCGAACAGGTGCAGAGCCGATTCGAGAAGCTGAAGAAGCAGAAAACTGATGGGGAGAGGTTGTTAACAGAGCAAGATCTTGAGGAGCGGGTGTTGAAGCAGCAGGAGGAAGAGGAGGAGAGGAAGCGCCAGCGTCGACAAAGAAAGAAAGAGAAGAAGAATAAGAGAGACAATGTAGTAGCAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF4378 VARLMGL zf-C2H2_jaz zf-met

Protein Analysis

158

Amino Acids

18.68

Weight (kDa)

9.86

Isoelectric Point (pI)

69.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05760 AT3G05760
fragaria_vesca	FvH4_6g07240 FvH4_6g07240
malus_domestica	MD04G1195100.v1.1 MD12G1207200.v1.1
prunus_persica	Prupe.6G314900_v2.0.a1
pyrus_communis	pycom12g19500
rosa_chinensis	RchiOBHm_Chr3g0456881 RchiOBHm_Chr7g0179971
rosa_laevigata	RLG00000005306 RLG00000025272
rosa_multiflora	Rmu_sc0019791.1_g000004 Rmu_sc0021305.1_g000001 Rmu_ssc0000119.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273270 Rroxscaffold_6G00422420
rosa_rugosa	Rorug03G0016500
rosa_samantha	Rh3AG076900 Rh3BG078700 Rh3CG078500 Rh7BG029200 Rh7CG030900 Rh7DG030200
rosa_wichuraiana	Rw3G006600 Rw7G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	280, 376
AccI	GTMKAC	2 cut(s)	102, 424
AciI	CCGC	3 cut(s)	62, 280, 376
AcuI	CTGAAG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	82, 385
AluBI	AGCT	5 cut(s)	32, 40, 149, 252, 319
AluI	AGCT	5 cut(s)	32, 40, 149, 252, 319
Alw21I	GWGCWC	2 cut(s)	34, 182
Alw26I	GTCTC	2 cut(s)	4, 450
ApeKI	GCWGC	1 cut(s)	388
AspLEI	GCGC	2 cut(s)	87, 417
AspS9I	GGNCC	3 cut(s)	56, 90, 223
AvaII	GGWCC	3 cut(s)	56, 90, 223
BanII	GRGCYC	1 cut(s)	34
Bbv12I	GWGCWC	2 cut(s)	34, 182
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	1 cut(s)	332
BciVI	GTATCC	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	4, 450
BfaI	CTAG	2 cut(s)	119, 475
BfoI	RGCGCY	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme18I	GGWCC	3 cut(s)	56, 90, 223
BmgT120I	GGNCC	3 cut(s)	56, 90, 223
BpuEI	CTTGAG	1 cut(s)	389
BsaXI	ACNNNNNCTCC	4 cut(s)	335, 365, 365, 395
BseRI	GAGGAG	6 cut(s)	32, 35, 38, 386, 416, 419
BseXI	GCAGC	1 cut(s)	400
BsgI	GTGCAG	1 cut(s)	320
BsiHKAI	GWGCWC	2 cut(s)	34, 182
BsmAI	GTCTC	2 cut(s)	4, 450
BsmBI	CGTCTC	1 cut(s)	4
Bsp1286I	GDGCHC	2 cut(s)	34, 182
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	3 cut(s)	62, 280, 376
BsrBI	CCGCTC	2 cut(s)	280, 376
BssMI	GATC	1 cut(s)	364
BssNAI	GTATAC	1 cut(s)	103
Bst1107I	GTATAC	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	4 cut(s)	161, 165, 282, 419
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	2 cut(s)	87, 417
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	2 cut(s)	4, 450
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 82, 258, 325
BstNSI	RCATGY	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	364
BstXI	CCANNNNNNTGG	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	364
BstZ17I	GTATAC	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	164
Cac8I	GCNNGC	4 cut(s)	161, 165, 282, 419
CfoI	GCGC	2 cut(s)	87, 417
Cfr13I	GGNCC	3 cut(s)	56, 90, 223
CseI	GACGC	1 cut(s)	410
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	9 cut(s)	32, 40, 76, 118, 149, 159, 252, 306, 319
CviKI_1	RGCY	9 cut(s)	32, 40, 76, 118, 149, 159, 252, 306, 319
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	3 cut(s)	56, 90, 223
Eco53kI	GAGCTC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	32
EcoO109I	RGGNCCY	2 cut(s)	56, 90
EcoT38I	GRGCYC	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	4
FaeI	CATG	1 cut(s)	265
FaiI	YATR	3 cut(s)	103, 263, 269
FatI	CATG	1 cut(s)	261
FauI	CCCGC	2 cut(s)	273, 369
FblI	GTMKAC	2 cut(s)	102, 424
Fnu4HI	GCNGC	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	2 cut(s)	119, 475
GlaI	GCGC	2 cut(s)	86, 416
GluI	GCNGC	1 cut(s)	389
HaeII	RGCGCY	1 cut(s)	418
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	2 cut(s)	87, 417
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	2 cut(s)	85, 415
HinP1I	GCGC	2 cut(s)	85, 415
HincII	GTYRAC	2 cut(s)	354, 425
HindII	GTYRAC	2 cut(s)	354, 425
HinfI	GANTC	4 cut(s)	110, 206, 286, 309
HpaI	GTTAAC	1 cut(s)	354
Hpy166II	GTNNAC	3 cut(s)	103, 354, 425
Hpy188I	TCNGA	2 cut(s)	9, 184
Hpy188III	TCNNGA	5 cut(s)	43, 51, 290, 313, 368
Hpy8I	GTNNAC	3 cut(s)	103, 354, 425
Hpy99I	CGWCG	1 cut(s)	426
HpyAV	CCTTC	1 cut(s)	265
HpyCH4V	TGCA	4 cut(s)	67, 195, 212, 301
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 82, 258, 325
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	2 cut(s)	85, 415
KspAI	GTTAAC	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	3 cut(s)	154, 277, 373
LpnPI	CCDG	8 cut(s)	72, 73, 116, 153, 173, 281, 377, 431
Lsp1109I	GCAGC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	119, 475
MalI	GATC	1 cut(s)	366
MbiI	CCGCTC	2 cut(s)	280, 376
MboI	GATC	1 cut(s)	364
MboII	GAAGA	4 cut(s)	334, 410, 454, 457
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	34, 182
MluCI	AATT	1 cut(s)	190
MlyI	GAGTC	2 cut(s)	200, 280
MmeI	TCCRAC	1 cut(s)	167
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	2 cut(s)	231, 266
MwoI	GCNNNNNNNGC	4 cut(s)	73, 82, 258, 325
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	1 cut(s)	265
NmeAIII	GCCGAG	1 cut(s)	94
NspI	RCATGY	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	110, 309
PkrI	GCNGC	1 cut(s)	390
PleI	GAGTC	2 cut(s)	200, 280
PpsI	GAGTC	2 cut(s)	200, 280
PpuMI	RGGWCCY	2 cut(s)	56, 90
Psp124BI	GAGCTC	1 cut(s)	34
Psp5II	RGGWCCY	2 cut(s)	56, 90
PspPI	GGNCC	3 cut(s)	56, 90, 223
PspPPI	RGGWCCY	2 cut(s)	56, 90
PsuI	RGATCY	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	231, 266
SacI	GAGCTC	1 cut(s)	34
SalI	GTCGAC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	3 cut(s)	56, 90, 223
SchI	GAGTC	2 cut(s)	200, 280
SduI	GDGCHC	2 cut(s)	34, 182
SinI	GGWCC	3 cut(s)	56, 90, 223
SmiMI	CAYNNNNRTG	2 cut(s)	231, 266
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	3 cut(s)	62, 280, 376
SspMI	CTAG	2 cut(s)	119, 475
SstI	GAGCTC	1 cut(s)	34
TaqI	TCGA	5 cut(s)	50, 108, 291, 312, 424
TasI	AATT	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	110, 309
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TseI	GCWGC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	284
VpaK11BI	GGWCC	3 cut(s)	56, 90, 223
XceI	RCATGY	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmiI	GTMKAC	2 cut(s)	102, 424
XspI	CTAG	2 cut(s)	119, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.