Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006545

Physical Location & Seq

Genomic Coordinates Reverse (-)

28721032 .. 28724946

Gene Structure 3915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1207200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCCGGCAATAATGCTGCTGGAGTAGATAATACGTTCAGAAGGAAATTCGATCGAGAAGAGTTCTTGGAGCGAGCTCGTGAGCGTGAAAGACAGGAGGAGGAGGGAGGACCGCATAAATCCAAATCGAAAGGCCCGCCAGTGCAAAGGAAGCCATTGAAGCACCGGGATTATGAAGTGGATCTCAATTCTCGCTTGGGGAAAACACAGGTTGTTACTCCAATAGCACCTCTAAGCCAGCAGGCTGGATACTATTGTTCGGTTTGTGAGTGTGTTGTAAAAGATTCTGCAAACTACTTGGATCATATCAATGGCAAGAAACATCAAAGAGCTTTGGGTATGTCTATGCGGGTGGAGCGGGCATCTCTCCAACAGGAACGATTTGAAAAGCTCAAGAAGCGGAAAACTGATGGCACTTTCACAGAGCAAGATCTTGATGAGCGGATCTTGAAGCAGCAGCAAGAAGAGGAAGAGCGGAAGCGCCAGCGTCGAGAAAGGAAGAAAGAGAAGAAGAAAGACAAGGTAGTCGAAGAGGAAACCGAAATTGATCCTGATGTTGCAGCTATGATGGGATTTGGTGGATTCGGTTCGACCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF4378 VARLMGL zf-C2H2_jaz zf-met

Protein Analysis

201

Amino Acids

23.27

Weight (kDa)

9.33

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-met	PF12874	84 - 108	1.1e-06	Zinc-finger of C2H2 type
zf-C2H2_jaz	PF12171	84 - 109	4.6e-06	Zinc-finger double-stranded RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05760 AT3G05760
fragaria_vesca	FvH4_6g07240 FvH4_6g07240
malus_domestica	MD04G1195100.v1.1 MD12G1207200.v1.1
prunus_persica	Prupe.6G314900_v2.0.a1
pyrus_communis	pycom12g19500
rosa_chinensis	RchiOBHm_Chr3g0456881 RchiOBHm_Chr7g0179971
rosa_laevigata	RLG00000005306 RLG00000025272
rosa_multiflora	Rmu_sc0019791.1_g000004 Rmu_sc0021305.1_g000001 Rmu_ssc0000119.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273270 Rroxscaffold_6G00422420
rosa_rugosa	Rorug03G0016500
rosa_samantha	Rh3AG076900 Rh3BG078700 Rh3CG078500 Rh7BG029200 Rh7CG030900 Rh7DG030200
rosa_wichuraiana	Rw3G006600 Rw7G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
AccBSI	CCGCTC	3 cut(s)	358, 442, 475
AciI	CCGC	7 cut(s)	113, 137, 349, 358, 400, 442, 475
AclWI	GGATC	4 cut(s)	189, 309, 452, 542
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	160, 386, 451
AluBI	AGCT	4 cut(s)	77, 332, 391, 563
AluI	AGCT	4 cut(s)	77, 332, 391, 563
Alw21I	GWGCWC	1 cut(s)	79
AlwI	GGATC	4 cut(s)	189, 309, 452, 542
AoxI	GGCC	2 cut(s)	3, 133
ApeKI	GCWGC	4 cut(s)	17, 454, 457, 560
ApoI	RAATTY	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	2 cut(s)	110, 134
AsuC2I	CCSGG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	110
BaeI	ACNNNNGTAYC	2 cut(s)	241, 274
BanII	GRGCYC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	4 cut(s)	4, 466, 469, 572
BccI	CCATC	2 cut(s)	404, 562
BciVI	GTATCC	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	4 cut(s)	18, 455, 458, 561
BlsI	GCNGC	4 cut(s)	19, 456, 459, 562
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	110, 134
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	113, 116
BseXI	GCAGC	4 cut(s)	4, 466, 469, 572
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	5, 135
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	6, 166
BsnI	GGCC	2 cut(s)	5, 135
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	6 cut(s)	52, 181, 301, 430, 444, 547
BspACI	CCGC	7 cut(s)	113, 137, 349, 358, 400, 442, 475
BspANI	GGCC	2 cut(s)	5, 135
BspPI	GGATC	4 cut(s)	189, 309, 452, 542
BspQI	GCTCTTC	1 cut(s)	465
BsrBI	CCGCTC	3 cut(s)	358, 442, 475
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	6 cut(s)	52, 181, 301, 430, 444, 547
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst6I	CTCTTC	4 cut(s)	54, 459, 465, 525
BstC8I	GCNNGC	7 cut(s)	7, 75, 137, 239, 243, 360, 485
BstDEI	CTNAG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	6 cut(s)	55, 184, 304, 433, 447, 550
BstMBI	GATC	6 cut(s)	52, 181, 301, 430, 444, 547
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 160, 355, 397
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	4, 466, 469, 572
BstX2I	RGATCY	3 cut(s)	181, 430, 444
BstXI	CCANNNNNNTGG	1 cut(s)	245
BstYI	RGATCY	3 cut(s)	181, 430, 444
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	5, 135
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	7 cut(s)	7, 75, 137, 239, 243, 360, 485
CfoI	GCGC	1 cut(s)	483
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	110, 134
CseI	GACGC	1 cut(s)	476
CviJI	RGCY	9 cut(s)	5, 77, 135, 154, 237, 245, 332, 391, 563
CviKI_1	RGCY	9 cut(s)	5, 77, 135, 154, 237, 245, 332, 391, 563
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	6 cut(s)	54, 183, 303, 432, 446, 549
DpnII	GATC	6 cut(s)	52, 181, 301, 430, 444, 547
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	54, 459, 465, 525
EarI	CTCTTC	4 cut(s)	54, 459, 465, 525
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	79
FaiI	YATR	6 cut(s)	117, 174, 306, 341, 347, 566
FauI	CCCGC	3 cut(s)	144, 342, 351
Fnu4HI	GCNGC	4 cut(s)	18, 455, 458, 561
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	4 cut(s)	18, 455, 458, 561
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	4 cut(s)	18, 455, 458, 561
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	2 cut(s)	5, 135
HapII	CCGG	2 cut(s)	6, 166
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	1 cut(s)	483
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HinfI	GANTC	2 cut(s)	284, 582
HpaII	CCGG	2 cut(s)	6, 166
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	7 cut(s)	56, 80, 394, 434, 448, 491, 551
Hpy99I	CGWCG	1 cut(s)	492
HpyAV	CCTTC	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	3 cut(s)	145, 290, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 160, 355, 397
HpyF3I	CTNAG	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	35
HspAI	GCGC	1 cut(s)	481
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	52, 181, 301, 430, 444, 547
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	70, 355
Lsp1109I	GCAGC	4 cut(s)	4, 466, 469, 572
LweI	GCATC	1 cut(s)	371
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	6 cut(s)	54, 183, 303, 432, 446, 549
MbiI	CCGCTC	3 cut(s)	358, 442, 475
MboI	GATC	6 cut(s)	52, 181, 301, 430, 444, 547
MboII	GAAGA	7 cut(s)	71, 476, 482, 511, 520, 523, 542
MflI	RGATCY	3 cut(s)	181, 430, 444
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	3 cut(s)	47, 187, 543
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	7 cut(s)	91, 94, 97, 101, 240, 460, 526
MroNI	GCCGGC	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	2 cut(s)	6, 166
MspR9I	CCNGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	4 cut(s)	151, 160, 355, 397
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	6 cut(s)	52, 181, 301, 430, 444, 547
NgoMIV	GCCGGC	1 cut(s)	5
PciSI	GCTCTTC	1 cut(s)	465
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	284, 582
PkrI	GCNGC	4 cut(s)	19, 456, 459, 562
Ple19I	CGATCG	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	110, 134
PsuI	RGATCY	3 cut(s)	181, 430, 444
PvuI	CGATCG	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	465
SatI	GCNGC	4 cut(s)	18, 455, 458, 561
Sau3AI	GATC	6 cut(s)	52, 181, 301, 430, 444, 547
Sau96I	GGNCC	2 cut(s)	110, 134
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	8 cut(s)	38, 79, 213, 232, 334, 393, 525, 565
SfaNI	GCATC	1 cut(s)	371
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	3 cut(s)	47, 187, 543
SsiI	CCGC	7 cut(s)	113, 137, 349, 358, 400, 442, 475
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	165
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	6 cut(s)	51, 55, 128, 490, 528, 590
TasI	AATT	3 cut(s)	47, 187, 543
TfiI	GAWTC	2 cut(s)	284, 582
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	4 cut(s)	17, 454, 457, 560
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.