Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000119.1

Orthogroup ID

OG0006545

Physical Location & Seq

Genomic Coordinates Forward (+)

36899 .. 37378

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000119.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ctgcgagcgtcagagacaggaggaggagggagagctcaaaagctcacgaaatcgagaggtcctgcggtgcaaaggaagccattgaagagcaggacctaccaagtatacctcgaatctcggctagggcaaacacaggttcttactccaacagctcctttgagccagcaagcaggatacttgtgctcggattgtaattgcattgcaaaagactctgcaaacttcttggaccacatcaatggcaagaaacaccaaagctctgttggcatgtctacgaaggtggagcgggcgactctcgaacaggtgcagagccgattcgagaagctgaagaagcagaaaactgatggggagaggttgttaacagagcaagatcttgaggagcgggtgttgaagcagcagaaggaagaggaggagatgaagcgccagcgtcgacaaagaaagaaagagaacatgaataagagagacaatgtagtagcagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF4378 VARLMGL zf-C2H2_jaz zf-met

Protein Analysis

159

Amino Acids

18.16

Weight (kDa)

9.82

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05760 AT3G05760
fragaria_vesca	FvH4_6g07240 FvH4_6g07240
malus_domestica	MD04G1195100.v1.1 MD12G1207200.v1.1
prunus_persica	Prupe.6G314900_v2.0.a1
pyrus_communis	pycom12g19500
rosa_chinensis	RchiOBHm_Chr3g0456881 RchiOBHm_Chr7g0179971
rosa_laevigata	RLG00000005306 RLG00000025272
rosa_multiflora	Rmu_sc0019791.1_g000004 Rmu_sc0021305.1_g000001 Rmu_ssc0000119.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273270 Rroxscaffold_6G00422420
rosa_rugosa	Rorug03G0016500
rosa_samantha	Rh3AG076900 Rh3BG078700 Rh3CG078500 Rh7BG029200 Rh7CG030900 Rh7DG030200
rosa_wichuraiana	Rw3G006600 Rw7G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	283, 379
AccI	GTMKAC	3 cut(s)	105, 269, 427
AciI	CCGC	3 cut(s)	65, 283, 379
AcuI	CTGAAG	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	85, 388
AluBI	AGCT	5 cut(s)	35, 43, 152, 255, 322
AluI	AGCT	5 cut(s)	35, 43, 152, 255, 322
Alw21I	GWGCWC	2 cut(s)	37, 185
Alw26I	GTCTC	2 cut(s)	8, 453
ApeKI	GCWGC	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	3 cut(s)	59, 93, 226
AvaII	GGWCC	3 cut(s)	59, 93, 226
BanII	GRGCYC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	37, 185
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	1 cut(s)	335
BciVI	GTATCC	1 cut(s)	167
BcoDI	GTCTC	2 cut(s)	8, 453
BfaI	CTAG	2 cut(s)	122, 478
BfoI	RGCGCY	1 cut(s)	421
BfuI	GTATCC	1 cut(s)	167
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
Bme18I	GGWCC	3 cut(s)	59, 93, 226
BmgT120I	GGNCC	3 cut(s)	59, 93, 226
BpuEI	CTTGAG	1 cut(s)	392
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 368, 368, 398
Bse3DI	GCAATG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	198
BseRI	GAGGAG	5 cut(s)	36, 39, 389, 419, 422
BseXI	GCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	323
BsiHKAI	GWGCWC	2 cut(s)	37, 185
BsmAI	GTCTC	2 cut(s)	8, 453
Bsp1286I	GDGCHC	2 cut(s)	37, 185
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	3 cut(s)	65, 283, 379
BspQI	GCTCTTC	1 cut(s)	80
BsrBI	CCGCTC	2 cut(s)	283, 379
BsrDI	GCAATG	1 cut(s)	198
BssMI	GATC	1 cut(s)	367
BssNAI	GTATAC	1 cut(s)	106
Bst1107I	GTATAC	1 cut(s)	106
Bst6I	CTCTTC	2 cut(s)	80, 396
BstC8I	GCNNGC	5 cut(s)	6, 164, 168, 285, 422
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	2 cut(s)	8, 453
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 261, 328
BstNSI	RCATGY	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	367
BstZ17I	GTATAC	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	167
Cac8I	GCNNGC	5 cut(s)	6, 164, 168, 285, 422
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	3 cut(s)	59, 93, 226
CseI	GACGC	1 cut(s)	413
CviAII	CATG	2 cut(s)	265, 448
CviJI	RGCY	9 cut(s)	35, 43, 79, 121, 152, 162, 255, 309, 322
CviKI_1	RGCY	9 cut(s)	35, 43, 79, 121, 152, 162, 255, 309, 322
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
Eam1104I	CTCTTC	2 cut(s)	80, 396
EarI	CTCTTC	2 cut(s)	80, 396
Ecl136II	GAGCTC	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	37
Eco47I	GGWCC	3 cut(s)	59, 93, 226
Eco53kI	GAGCTC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	35
EcoO109I	RGGNCCY	2 cut(s)	59, 93
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	2 cut(s)	268, 451
FaiI	YATR	3 cut(s)	106, 266, 449
FatI	CATG	2 cut(s)	264, 447
FauI	CCCGC	2 cut(s)	276, 372
FblI	GTMKAC	3 cut(s)	105, 269, 427
Fnu4HI	GCNGC	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	392
FspBI	CTAG	2 cut(s)	122, 478
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	1 cut(s)	392
HaeII	RGCGCY	1 cut(s)	421
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	2 cut(s)	268, 451
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HincII	GTYRAC	2 cut(s)	357, 428
HindII	GTYRAC	2 cut(s)	357, 428
HinfI	GANTC	4 cut(s)	113, 209, 289, 312
HpaI	GTTAAC	1 cut(s)	357
Hpy166II	GTNNAC	4 cut(s)	106, 270, 357, 428
Hpy188I	TCNGA	2 cut(s)	13, 187
Hpy188III	TCNNGA	5 cut(s)	46, 54, 293, 316, 371
Hpy8I	GTNNAC	4 cut(s)	106, 270, 357, 428
Hpy99I	CGWCG	1 cut(s)	429
HpyAV	CCTTC	2 cut(s)	268, 391
HpyCH4V	TGCA	5 cut(s)	70, 198, 203, 215, 304
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 261, 328
Hsp92II	CATG	2 cut(s)	268, 451
HspAI	GCGC	1 cut(s)	418
KspAI	GTTAAC	1 cut(s)	357
Kzo9I	GATC	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	3 cut(s)	157, 280, 376
LpnPI	CCDG	8 cut(s)	3, 75, 76, 119, 156, 176, 284, 434
Lsp1109I	GCAGC	1 cut(s)	403
MaeI	CTAG	2 cut(s)	122, 478
MalI	GATC	1 cut(s)	369
MbiI	CCGCTC	2 cut(s)	283, 379
MboI	GATC	1 cut(s)	367
MboII	GAAGA	3 cut(s)	97, 337, 413
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	37, 185
MluCI	AATT	1 cut(s)	193
MlyI	GAGTC	2 cut(s)	203, 283
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	9 cut(s)	14, 17, 20, 50, 119, 342, 367, 397, 400
MseI	TTAA	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	234
MwoI	GCNNNNNNNGC	3 cut(s)	76, 261, 328
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	2 cut(s)	268, 451
NmeAIII	GCCGAG	1 cut(s)	97
NspI	RCATGY	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	113, 312
PkrI	GCNGC	1 cut(s)	393
PleI	GAGTC	2 cut(s)	203, 283
PpsI	GAGTC	2 cut(s)	203, 283
PpuMI	RGGWCCY	2 cut(s)	59, 93
Psp124BI	GAGCTC	1 cut(s)	37
Psp5II	RGGWCCY	2 cut(s)	59, 93
PspPI	GGNCC	3 cut(s)	59, 93, 226
PspPPI	RGGWCCY	2 cut(s)	59, 93
PsuI	RGATCY	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	3 cut(s)	59, 93, 226
SchI	GAGTC	2 cut(s)	203, 283
SduI	GDGCHC	2 cut(s)	37, 185
SinI	GGWCC	3 cut(s)	59, 93, 226
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	1 cut(s)	193
SsiI	CCGC	3 cut(s)	65, 283, 379
SspMI	CTAG	2 cut(s)	122, 478
SstI	GAGCTC	1 cut(s)	37
TaqI	TCGA	5 cut(s)	53, 111, 294, 315, 427
TasI	AATT	1 cut(s)	193
TfiI	GAWTC	2 cut(s)	113, 312
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TseI	GCWGC	1 cut(s)	391
TspDTI	ATGAA	2 cut(s)	428, 464
VpaK11BI	GGWCC	3 cut(s)	59, 93, 226
XceI	RCATGY	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmiI	GTMKAC	3 cut(s)	105, 269, 427
XspI	CTAG	2 cut(s)	122, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.