Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006545

Physical Location & Seq

Genomic Coordinates Reverse (-)

28088865 .. 28091848

Gene Structure 2984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G314900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTAACACCAGCAATAATGCCGCTGGAGTAGATAATACTTTCAGAAGGAAATTCGATCGAGAAGAGTTCTTGGAGCGAGCTCGTGAGCGTGAAAGACAGGAGGAGGAGGGGCCGCATAAATCCAAATCGAAAGGCCCGCCGGTGCAAAGGAAGCCATTGAAGCACAGAGATTATGAAGTAGATCTCGAGTCTCGCTTGGGGAAAACACAGGTTGTTACTCCAATAGCACCTTTAAGCCAGCAGGCTGGATACTTCTGTTCAGTTTGTGAGTGTGTTGTAAAAGATTCTGCAAACTACTTGGATCATATCAATGGCAAGAAACATCAAAGAGCTTTGGGTATGTCTATGCGGGTAGAGCGGGCATCTCTCCAACAGGTTCAGGAGCGATTTGAAAAGCTCAAGAAGCGGAAAACTGATGGCACTTTCACAGAGCAAGATCTTGATGAGCGGATCTTGAAGCAGCAGCAAGAAGAGGAGGAGCGGAAGCGCCAGCGTCGAGAAAGGAAGAAAGAGAAGAAGAAAGAGAAGGTAGTAGAAGAGGAAACTGAAATGGATCCTGACGTTGCAGCTATGATGGGATTTGGTGGATTCGGTTCAACCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF4378 VARLMGL zf-C2H2_jaz zf-met

Protein Analysis

204

Amino Acids

23.72

Weight (kDa)

9.25

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05760 AT3G05760
fragaria_vesca	FvH4_6g07240 FvH4_6g07240
malus_domestica	MD04G1195100.v1.1 MD12G1207200.v1.1
prunus_persica	Prupe.6G314900_v2.0.a1
pyrus_communis	pycom12g19500
rosa_chinensis	RchiOBHm_Chr3g0456881 RchiOBHm_Chr7g0179971
rosa_laevigata	RLG00000005306 RLG00000025272
rosa_multiflora	Rmu_sc0019791.1_g000004 Rmu_sc0021305.1_g000001 Rmu_ssc0000119.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273270 Rroxscaffold_6G00422420
rosa_rugosa	Rorug03G0016500
rosa_samantha	Rh3AG076900 Rh3BG078700 Rh3CG078500 Rh7BG029200 Rh7CG030900 Rh7DG030200
rosa_wichuraiana	Rw3G006600 Rw7G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	361, 451, 484
AciI	CCGC	8 cut(s)	24, 116, 140, 352, 361, 409, 451, 484
AclWI	GGATC	4 cut(s)	312, 461, 551, 564
AcsI	RAATTY	1 cut(s)	53
AgsI	TTSAA	4 cut(s)	163, 395, 460, 600
AluBI	AGCT	4 cut(s)	83, 335, 400, 572
AluI	AGCT	4 cut(s)	83, 335, 400, 572
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	4 cut(s)	312, 461, 551, 564
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	113, 136
ApeKI	GCWGC	3 cut(s)	463, 466, 569
ApoI	RAATTY	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	113, 137
AvaI	CYCGRG	1 cut(s)	188
BaeI	ACNNNNGTAYC	2 cut(s)	244, 277
BamHI	GGATCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	85
BauI	CACGAG	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	3 cut(s)	475, 478, 581
BccI	CCATC	2 cut(s)	413, 571
BciVI	GTATCC	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	493
BfuI	GTATCC	1 cut(s)	245
BglII	AGATCT	2 cut(s)	184, 439
BisI	GCNGC	5 cut(s)	24, 116, 464, 467, 570
BlsI	GCNGC	5 cut(s)	25, 117, 465, 468, 571
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	113, 137
BmiI	GGNNCC	2 cut(s)	114, 558
BmsI	GCATC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	386
Bse118I	RCCGGY	1 cut(s)	142
BseRI	GAGGAG	4 cut(s)	119, 122, 491, 494
BseXI	GCAGC	3 cut(s)	475, 478, 581
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	115, 138
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	115, 138
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	6 cut(s)	58, 184, 304, 439, 453, 556
BspACI	CCGC	8 cut(s)	24, 116, 140, 352, 361, 409, 451, 484
BspANI	GGCC	2 cut(s)	115, 138
BspLI	GGNNCC	2 cut(s)	114, 558
BspPI	GGATC	4 cut(s)	312, 461, 551, 564
BsrBI	CCGCTC	3 cut(s)	361, 451, 484
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssMI	GATC	6 cut(s)	58, 184, 304, 439, 453, 556
BssSI	CACGAG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	84
Bst6I	CTCTTC	3 cut(s)	60, 468, 534
BstC8I	GCNNGC	6 cut(s)	81, 140, 242, 246, 363, 494
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	6 cut(s)	61, 187, 307, 442, 456, 559
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	6 cut(s)	58, 184, 304, 439, 453, 556
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 163, 358, 406
BstV1I	GCAGC	3 cut(s)	475, 478, 581
BstX2I	RGATCY	4 cut(s)	184, 439, 453, 556
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	4 cut(s)	184, 439, 453, 556
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	115, 138
Cac8I	GCNNGC	6 cut(s)	81, 140, 242, 246, 363, 494
CfoI	GCGC	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	113, 137
CseI	GACGC	1 cut(s)	485
DpnI	GATC	6 cut(s)	60, 186, 306, 441, 455, 558
DpnII	GATC	6 cut(s)	58, 184, 304, 439, 453, 556
Eam1104I	CTCTTC	3 cut(s)	60, 468, 534
EarI	CTCTTC	3 cut(s)	60, 468, 534
Ecl136II	GAGCTC	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	85
FaiI	YATR	6 cut(s)	120, 177, 309, 344, 350, 575
FauI	CCCGC	3 cut(s)	147, 345, 354
Fnu4HI	GCNGC	5 cut(s)	24, 116, 464, 467, 570
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	5 cut(s)	24, 116, 464, 467, 570
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	5 cut(s)	24, 116, 464, 467, 570
GsuI	CTGGAG	1 cut(s)	48
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	2 cut(s)	115, 138
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	492
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HinfI	GANTC	3 cut(s)	191, 287, 591
HpaII	CCGG	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	9 cut(s)	62, 86, 188, 383, 403, 443, 457, 500, 560
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	2 cut(s)	42, 523
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	3 cut(s)	148, 293, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 163, 358, 406
HpySE526I	ACGT	1 cut(s)	564
HspAI	GCGC	1 cut(s)	490
Kzo9I	GATC	6 cut(s)	58, 184, 304, 439, 453, 556
LmnI	GCTCC	3 cut(s)	76, 385, 481
Lsp1109I	GCAGC	3 cut(s)	475, 478, 581
LweI	GCATC	1 cut(s)	374
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	6 cut(s)	60, 186, 306, 441, 455, 558
MbiI	CCGCTC	3 cut(s)	361, 451, 484
MboI	GATC	6 cut(s)	58, 184, 304, 439, 453, 556
MboII	GAAGA	6 cut(s)	77, 485, 520, 529, 532, 551
MflI	RGATCY	4 cut(s)	184, 439, 453, 556
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	6 cut(s)	97, 100, 103, 469, 472, 535
MseI	TTAA	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	154, 163, 358, 406
NdeII	GATC	6 cut(s)	58, 184, 304, 439, 453, 556
NlaIV	GGNNCC	2 cut(s)	114, 558
PaeR7I	CTCGAG	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	287, 591
PkrI	GCNGC	5 cut(s)	25, 117, 465, 468, 571
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	114, 558
PspPI	GGNCC	2 cut(s)	113, 137
PsuI	RGATCY	4 cut(s)	184, 439, 453, 556
PvuI	CGATCG	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	5 cut(s)	24, 116, 464, 467, 570
Sau3AI	GATC	6 cut(s)	58, 184, 304, 439, 453, 556
Sau96I	GGNCC	2 cut(s)	113, 137
SchI	GAGTC	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	9 cut(s)	85, 216, 235, 337, 381, 402, 534, 567, 574
SfaNI	GCATC	1 cut(s)	374
Sfr274I	CTCGAG	1 cut(s)	188
SgrAI	CRCCGGYG	1 cut(s)	142
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	2 cut(s)	188, 401
SmoI	CTYRAG	2 cut(s)	188, 401
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	8 cut(s)	24, 116, 140, 352, 361, 409, 451, 484
SstI	GAGCTC	1 cut(s)	85
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	5 cut(s)	57, 61, 131, 189, 499
TasI	AATT	1 cut(s)	53
TauI	GCSGC	2 cut(s)	26, 118
TfiI	GAWTC	2 cut(s)	287, 591
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TseI	GCWGC	3 cut(s)	463, 466, 569
TspDTI	ATGAA	1 cut(s)	192
XapI	RAATTY	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.