Rh3BG078700

Zinc finger matrin-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006545
Physical Location & Seq
Forward (+)
6149935 .. 6153075
3141 bp
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UTR
Exon/CDS
Intron
Rh3BG078700.1

Sequence Viewer

Length: 459 bp
ATGGCTAGCAATGGGGCTGTTGGAGTAGATAATACTCATAGAAGGAAATTCGATCTTGAAGAGTATGCTGAGAAAGCCCGCGAGCGTGAAAGAAAGGAGGAGGAGGGAGCTCGTAAGTCGAAATCGAAAGGTCCTCCGGTGCAGAGGAAGCCATTGAAGCACAGGGATTATGAAGTAGACCTTGAATCTCGCTTGGGGAAAACACAGGTTGTTACTCCAATAGCACCTTTAAGCCAGCAGGCTGGATACTTTTGTTCAGTTTGTGAGTGCGTTGTAAAAGATTCTGCAAACTACTTGGATCATATCAATGGCAAAAAACATCAAAGAGCTTTGGGTATGTCTATGCGGGTAGAGCGGGCATCTCTTGAACAGGTTAGTTTAAGAATCATTTATCTATTGAGAATGGCGCATCTTGATTACCTAAAGATTGGAAATAGATACACAGAAATCCAAATGTAG

Protein Analysis

152

Amino Acids

17.49

Weight (kDa)

9.38

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 83 - 107 2e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 355
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 81
AciI CCGC 3 cut(s) 79, 346, 355
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 47
AgsI TTSAA 4 cut(s) 59, 157, 185, 368
AluBI AGCT 2 cut(s) 110, 329
AluI AGCT 2 cut(s) 110, 329
Alw21I GWGCWC 1 cut(s) 112
AlwI GGATC 1 cut(s) 306
ApoI RAATTY 1 cut(s) 47
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 131
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 131
BaeI ACNNNNGTAYC 2 cut(s) 238, 271
BanII GRGCYC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 112
BciVI GTATCC 1 cut(s) 239
BfaI CTAG 1 cut(s) 6
BfuI GTATCC 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmsI GCATC 2 cut(s) 368, 418
BmtI GCTAGC 1 cut(s) 9
BsaWI WCCGGW 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 2 cut(s) 113, 116
BsgI GTGCAG 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 2 cut(s) 52, 298
BspACI CCGC 3 cut(s) 79, 346, 355
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 1 cut(s) 81
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 306
BsrBI CCGCTC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 16
BssMI GATC 2 cut(s) 52, 298
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 6 cut(s) 7, 79, 83, 236, 240, 357
BstDEI CTNAG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 2 cut(s) 55, 301
BstMBI GATC 2 cut(s) 52, 298
BstMWI GCNNNNNNNGC 4 cut(s) 74, 148, 157, 352
BstUI CGCG 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 242
BsuI GTATCC 1 cut(s) 239
Cac8I GCNNGC 6 cut(s) 7, 79, 83, 236, 240, 357
CfoI GCGC 1 cut(s) 409
Cfr13I GGNCC 1 cut(s) 131
CviJI RGCY 8 cut(s) 5, 17, 77, 110, 151, 234, 242, 329
CviKI_1 RGCY 8 cut(s) 5, 17, 77, 110, 151, 234, 242, 329
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 54, 300
DpnII GATC 2 cut(s) 52, 298
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 112
FaiI YATR 6 cut(s) 39, 66, 171, 303, 338, 344
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FauI CCCGC 3 cut(s) 86, 339, 348
FblI GTMKAC 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 112
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 408
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 409
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 3 cut(s) 185, 281, 384
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 178
Hpy188III TCNNGA 3 cut(s) 56, 365, 413
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 142, 287
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 148, 157, 352
HpyF3I CTNAG 1 cut(s) 69
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 2 cut(s) 52, 298
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 7 cut(s) 148, 150, 191, 224, 228, 248, 356
LweI GCATC 2 cut(s) 368, 418
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 211
MalI GATC 2 cut(s) 54, 300
MbiI CCGCTC 1 cut(s) 355
MboI GATC 2 cut(s) 52, 298
MboII GAAGA 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 1 cut(s) 47
MnlI CCTC 5 cut(s) 91, 94, 97, 138, 144
MseI TTAA 2 cut(s) 230, 380
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 4 cut(s) 74, 148, 157, 352
NdeII GATC 2 cut(s) 52, 298
NheI GCTAGC 1 cut(s) 5
PfeI GAWTC 3 cut(s) 185, 281, 384
PpuMI RGGWCCY 1 cut(s) 131
Psp124BI GAGCTC 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 131
PspPI GGNCC 1 cut(s) 131
PspPPI RGGWCCY 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 306
SacI GAGCTC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 230, 380
Sau3AI GATC 2 cut(s) 52, 298
Sau96I GGNCC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 112
SetI ASST 8 cut(s) 112, 133, 183, 210, 229, 331, 375, 423
SfaNI GCATC 2 cut(s) 368, 418
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 1 cut(s) 47
SsiI CCGC 3 cut(s) 79, 346, 355
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 112
TaqI TCGA 3 cut(s) 51, 119, 125
TasI AATT 1 cut(s) 47
TfiI GAWTC 3 cut(s) 185, 281, 384
Tru1I TTAA 2 cut(s) 230, 380
Tru9I TTAA 2 cut(s) 230, 380
TspDTI ATGAA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.