Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006545

Physical Location & Seq

Genomic Coordinates Forward (+)

2068418 .. 2068858

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16044

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCACATGCTAGCAATAGTGCAGTTGTAGTTGGAGTAGGTAGAAGGAGATTCAATCTGGAAGAGTATGCGGAGCGAGCCTGCGAGCGTCAGAGACAGGAGGAGGAGGAGGAGAGAGCTCAAAAGCTCACGAAATCGAGAGGTCCTGCAGTGCAAAGGAAGCCATTGAAGAGCAGGACCTACCAAGTATACCTCGAATCTCGGCTAGGGCAAACACAGGTTCTTACTCCAACAGCTCCTTTGAGCCAGCAAGCAGGATACTTGTGCTCGGATTGTAATTGCATTGTAAAAGACTCTGCAAACTTCTTGGACCACATCAATGGCAAGAAACACCAAAGCTCTGTTGGCATGTCTACGAAGGTGGAGCGGGCGACTCTCGAACAGGTGCAGAGCCGATTCGAGAAGCTGAAGAAGCAGAAACTGATGGGGAGAGGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF4378 VARLMGL zf-C2H2_jaz zf-met

Protein Analysis

146

Amino Acids

16.53

Weight (kDa)

9.64

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05760 AT3G05760
fragaria_vesca	FvH4_6g07240 FvH4_6g07240
malus_domestica	MD04G1195100.v1.1 MD12G1207200.v1.1
prunus_persica	Prupe.6G314900_v2.0.a1
pyrus_communis	pycom12g19500
rosa_chinensis	RchiOBHm_Chr3g0456881 RchiOBHm_Chr7g0179971
rosa_laevigata	RLG00000005306 RLG00000025272
rosa_multiflora	Rmu_sc0019791.1_g000004 Rmu_sc0021305.1_g000001 Rmu_ssc0000119.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273270 Rroxscaffold_6G00422420
rosa_rugosa	Rorug03G0016500
rosa_samantha	Rh3AG076900 Rh3BG078700 Rh3CG078500 Rh7BG029200 Rh7CG030900 Rh7DG030200
rosa_wichuraiana	Rw3G006600 Rw7G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	367
AccI	GTMKAC	2 cut(s)	189, 353
AciI	CCGC	2 cut(s)	71, 367
AcuI	CTGAAG	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	55, 169
AluBI	AGCT	5 cut(s)	119, 127, 236, 339, 406
AluI	AGCT	5 cut(s)	119, 127, 236, 339, 406
Alw21I	GWGCWC	2 cut(s)	121, 269
Alw26I	GTCTC	1 cut(s)	88
AlwNI	CAGNNNCTG	1 cut(s)	421
AspS9I	GGNCC	3 cut(s)	143, 177, 310
AsuNHI	GCTAGC	1 cut(s)	11
AvaII	GGWCC	3 cut(s)	143, 177, 310
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	2 cut(s)	121, 269
BccI	CCATC	1 cut(s)	418
BciVI	GTATCC	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	12, 206
BfmI	CTRYAG	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	251
Bme18I	GGWCC	3 cut(s)	143, 177, 310
BmgT120I	GGNCC	3 cut(s)	143, 177, 310
BmtI	GCTAGC	1 cut(s)	15
BsaXI	ACNNNNNCTCC	1 cut(s)	421
BseRI	GAGGAG	4 cut(s)	116, 119, 122, 125
BsgI	GTGCAG	2 cut(s)	42, 407
BsiHKAI	GWGCWC	2 cut(s)	121, 269
BsmAI	GTCTC	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	121, 269
BspACI	CCGC	2 cut(s)	71, 367
BspMAI	CTGCAG	1 cut(s)	151
BspOI	GCTAGC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	367
BssNAI	GTATAC	1 cut(s)	190
Bst1107I	GTATAC	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	57, 164
BstC8I	GCNNGC	7 cut(s)	13, 78, 82, 86, 248, 252, 369
BstMAI	GTCTC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 160, 345, 412
BstNSI	RCATGY	2 cut(s)	11, 352
BstSFI	CTRYAG	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstZ17I	GTATAC	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	7 cut(s)	13, 78, 82, 86, 248, 252, 369
CaiI	CAGNNNCTG	1 cut(s)	421
Cfr13I	GGNCC	3 cut(s)	143, 177, 310
CseI	GACGC	1 cut(s)	77
CviAII	CATG	2 cut(s)	8, 349
Eam1104I	CTCTTC	2 cut(s)	57, 164
EarI	CTCTTC	2 cut(s)	57, 164
Ecl136II	GAGCTC	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	3 cut(s)	143, 177, 310
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	119
EcoO109I	RGGNCCY	2 cut(s)	143, 177
EcoT38I	GRGCYC	1 cut(s)	121
FaeI	CATG	2 cut(s)	11, 352
FaiI	YATR	4 cut(s)	9, 69, 190, 350
FatI	CATG	2 cut(s)	7, 348
FauI	CCCGC	1 cut(s)	360
FblI	GTMKAC	2 cut(s)	189, 353
FriOI	GRGCYC	1 cut(s)	121
FspBI	CTAG	2 cut(s)	12, 206
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	11, 352
HinfI	GANTC	5 cut(s)	51, 197, 293, 373, 396
Hpy166II	GTNNAC	2 cut(s)	190, 354
Hpy188I	TCNGA	2 cut(s)	93, 271
Hpy188III	TCNNGA	5 cut(s)	59, 130, 138, 377, 400
Hpy8I	GTNNAC	2 cut(s)	190, 354
HpyAV	CCTTC	2 cut(s)	39, 352
HpyCH4V	TGCA	6 cut(s)	23, 149, 154, 282, 299, 388
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 160, 345, 412
Hsp92II	CATG	2 cut(s)	11, 352
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	3 cut(s)	73, 241, 364
LpnPI	CCDG	9 cut(s)	44, 83, 94, 159, 160, 203, 240, 260, 368
MaeI	CTAG	2 cut(s)	12, 206
MbiI	CCGCTC	1 cut(s)	367
MboII	GAAGA	3 cut(s)	74, 181, 421
MhlI	GDGCHC	2 cut(s)	121, 269
MluCI	AATT	1 cut(s)	277
MlyI	GAGTC	2 cut(s)	287, 367
MmeI	TCCRAC	2 cut(s)	13, 254
MnlI	CCTC	7 cut(s)	94, 97, 100, 103, 134, 203, 425
MseI	TTAA	1 cut(s)	439
MslI	CAYNNNNRTG	1 cut(s)	318
MwoI	GCNNNNNNNGC	4 cut(s)	77, 160, 345, 412
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	11, 352
NmeAIII	GCCGAG	1 cut(s)	181
NspI	RCATGY	2 cut(s)	11, 352
PciSI	GCTCTTC	1 cut(s)	164
PfeI	GAWTC	3 cut(s)	51, 197, 396
PleI	GAGTC	2 cut(s)	287, 367
PpsI	GAGTC	2 cut(s)	287, 367
PpuMI	RGGWCCY	2 cut(s)	143, 177
Psp124BI	GAGCTC	1 cut(s)	121
Psp5II	RGGWCCY	2 cut(s)	143, 177
PspPI	GGNCC	3 cut(s)	143, 177, 310
PspPPI	RGGWCCY	2 cut(s)	143, 177
PstI	CTGCAG	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	439
Sau96I	GGNCC	3 cut(s)	143, 177, 310
SchI	GAGTC	2 cut(s)	287, 367
SduI	GDGCHC	2 cut(s)	121, 269
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	3 cut(s)	143, 177, 310
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	2 cut(s)	71, 367
SspMI	CTAG	2 cut(s)	12, 206
SstI	GAGCTC	1 cut(s)	121
TaqI	TCGA	4 cut(s)	137, 195, 378, 399
TasI	AATT	1 cut(s)	277
TfiI	GAWTC	3 cut(s)	51, 197, 396
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TscAI	CASTG	1 cut(s)	156
TspRI	CASTG	1 cut(s)	156
VpaK11BI	GGWCC	3 cut(s)	143, 177, 310
XceI	RCATGY	2 cut(s)	11, 352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmiI	GTMKAC	2 cut(s)	189, 353
XspI	CTAG	2 cut(s)	12, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.