Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006545

Physical Location & Seq

Genomic Coordinates Reverse (-)

28394731 .. 28397692

Gene Structure 2962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1195100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCCAGCAGTAATGCTGCCGGAGTAGATAATACTTTCAGAAGGAAATTCGATCGAGAAGAGTTCTTGGAGCGAGCTCGTGAGCGCGAAAGACAGGAGGAAGAGGGAGGACCGCATAAATCCAAATCGAAAGGTCCGCCACTGCAAAGGAAGCCATTGAAGCACAGGGATTATGAAGTGGATCTCGAGTCTCGCTTGGGGAAAACACAGGTTGTTACTCCGATAGCACCTTTAAGCCAGCAGGCTGGATACTATTGTTCGGTTTGTGAGTGTGTTGTAAAAGATTCTGCAAACTACTTGGATCATATCAATGGCAAGAAACATCAAAGAGCTTTGGGTATGTCTATGCGGGTAGAGCGGGCATCACTCCAACAGGTTCAGGAGCGATTTGAAAAACTCAAGAAGCGGAAAACTGATGGAACTTTCACAGAGCAAGATCTTGATGAGCGGATCTTGAAGCAGCAGCAAGAAGAGGAAGAGCGGAAGCGCCAGCGTCGGGAAAGGAAGAAAGAGAAGAAGAAAGAGAAGGTAGTCGAAGAGGAAACGGAAATTGATCCCGACGTTGCAGCTATGATGGGATTTGGTGGATTTGGTTCAGCCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF4378 VARLMGL zf-C2H2_jaz zf-met

Protein Analysis

203

Amino Acids

23.51

Weight (kDa)

9.23

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-met	PF12874	84 - 108	1.1e-06	Zinc-finger of C2H2 type
zf-C2H2_jaz	PF12171	84 - 109	4.6e-06	Zinc-finger double-stranded RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05760 AT3G05760
fragaria_vesca	FvH4_6g07240 FvH4_6g07240
malus_domestica	MD04G1195100.v1.1 MD12G1207200.v1.1
prunus_persica	Prupe.6G314900_v2.0.a1
pyrus_communis	pycom12g19500
rosa_chinensis	RchiOBHm_Chr3g0456881 RchiOBHm_Chr7g0179971
rosa_laevigata	RLG00000005306 RLG00000025272
rosa_multiflora	Rmu_sc0019791.1_g000004 Rmu_sc0021305.1_g000001 Rmu_ssc0000119.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273270 Rroxscaffold_6G00422420
rosa_rugosa	Rorug03G0016500
rosa_samantha	Rh3AG076900 Rh3BG078700 Rh3CG078500 Rh7BG029200 Rh7CG030900 Rh7DG030200
rosa_wichuraiana	Rw3G006600 Rw7G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	358, 448, 481
AccII	CGCG	1 cut(s)	87
AciI	CCGC	7 cut(s)	113, 137, 349, 358, 406, 448, 481
AclWI	GGATC	4 cut(s)	189, 309, 458, 548
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	496
AgsI	TTSAA	3 cut(s)	160, 392, 457
AluBI	AGCT	3 cut(s)	77, 332, 569
AluI	AGCT	3 cut(s)	77, 332, 569
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	4 cut(s)	189, 309, 458, 548
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	17, 460, 463, 566
ApoI	RAATTY	1 cut(s)	47
AspLEI	GCGC	2 cut(s)	87, 489
AspS9I	GGNCC	2 cut(s)	110, 134
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	2 cut(s)	110, 134
BaeI	ACNNNNGTAYC	2 cut(s)	241, 274
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	4 cut(s)	4, 472, 475, 578
BccI	CCATC	2 cut(s)	410, 568
BciVI	GTATCC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	490
BfuI	GTATCC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	436
BisI	GCNGC	4 cut(s)	18, 461, 464, 567
BlsI	GCNGC	4 cut(s)	19, 462, 465, 568
Bme18I	GGWCC	2 cut(s)	110, 134
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	110, 134
BmsI	GCATC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseXI	GCAGC	4 cut(s)	4, 472, 475, 578
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmAI	GTCTC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	6 cut(s)	52, 181, 301, 436, 450, 553
BspACI	CCGC	7 cut(s)	113, 137, 349, 358, 406, 448, 481
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	87
BspPI	GGATC	4 cut(s)	189, 309, 458, 548
BspQI	GCTCTTC	1 cut(s)	471
BsrBI	CCGCTC	3 cut(s)	358, 448, 481
BssMI	GATC	6 cut(s)	52, 181, 301, 436, 450, 553
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst6I	CTCTTC	5 cut(s)	54, 96, 465, 471, 531
BstC8I	GCNNGC	6 cut(s)	7, 75, 239, 243, 360, 491
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	2 cut(s)	87, 489
BstKTI	GATC	6 cut(s)	55, 184, 304, 439, 453, 556
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	6 cut(s)	52, 181, 301, 436, 450, 553
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 160, 355
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	4 cut(s)	4, 472, 475, 578
BstX2I	RGATCY	3 cut(s)	181, 436, 450
BstXI	CCANNNNNNTGG	1 cut(s)	245
BstYI	RGATCY	3 cut(s)	181, 436, 450
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	6 cut(s)	7, 75, 239, 243, 360, 491
CfoI	GCGC	2 cut(s)	87, 489
Cfr13I	GGNCC	2 cut(s)	110, 134
CseI	GACGC	1 cut(s)	482
CviJI	RGCY	8 cut(s)	5, 77, 154, 237, 245, 332, 569, 599
CviKI_1	RGCY	8 cut(s)	5, 77, 154, 237, 245, 332, 569, 599
DpnI	GATC	6 cut(s)	54, 183, 303, 438, 452, 555
DpnII	GATC	6 cut(s)	52, 181, 301, 436, 450, 553
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	54, 96, 465, 471, 531
EarI	CTCTTC	5 cut(s)	54, 96, 465, 471, 531
EciI	GGCGGA	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	110, 134
Eco53kI	GAGCTC	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	79
FaiI	YATR	6 cut(s)	117, 174, 306, 341, 347, 572
FauI	CCCGC	2 cut(s)	342, 351
Fnu4HI	GCNGC	4 cut(s)	18, 461, 464, 567
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	4 cut(s)	18, 461, 464, 567
GlaI	GCGC	2 cut(s)	86, 488
GluI	GCNGC	4 cut(s)	18, 461, 464, 567
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	1 cut(s)	482
HhaI	GCGC	2 cut(s)	87, 489
Hin6I	GCGC	2 cut(s)	85, 487
HinP1I	GCGC	2 cut(s)	85, 487
HinfI	GANTC	2 cut(s)	188, 284
HpaII	CCGG	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	41, 222
Hpy188III	TCNNGA	9 cut(s)	56, 80, 185, 380, 400, 440, 454, 497, 557
Hpy99I	CGWCG	2 cut(s)	498, 563
HpyAV	CCTTC	2 cut(s)	36, 520
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	3 cut(s)	145, 290, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 160, 355
HpySE526I	ACGT	1 cut(s)	561
HspAI	GCGC	2 cut(s)	85, 487
Kzo9I	GATC	6 cut(s)	52, 181, 301, 436, 450, 553
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	70, 382
Lsp1109I	GCAGC	4 cut(s)	4, 472, 475, 578
LweI	GCATC	1 cut(s)	371
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	6 cut(s)	54, 183, 303, 438, 452, 555
MbiI	CCGCTC	3 cut(s)	358, 448, 481
MboI	GATC	6 cut(s)	52, 181, 301, 436, 450, 553
MboII	GAAGA	8 cut(s)	71, 113, 482, 488, 517, 526, 529, 548
MflI	RGATCY	3 cut(s)	181, 436, 450
MhlI	GDGCHC	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	47, 549
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	5 cut(s)	91, 97, 101, 466, 532
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	21
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	151, 160, 355
NdeII	GATC	6 cut(s)	52, 181, 301, 436, 450, 553
PaeR7I	CTCGAG	1 cut(s)	185
PciSI	GCTCTTC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	4 cut(s)	19, 462, 465, 568
Ple19I	CGATCG	1 cut(s)	55
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	110, 134
PsuI	RGATCY	3 cut(s)	181, 436, 450
PvuI	CGATCG	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	4 cut(s)	18, 461, 464, 567
Sau3AI	GATC	6 cut(s)	52, 181, 301, 436, 450, 553
Sau96I	GGNCC	2 cut(s)	110, 134
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	9 cut(s)	79, 136, 213, 232, 334, 378, 531, 564, 571
SfaNI	GCATC	1 cut(s)	371
Sfr274I	CTCGAG	1 cut(s)	185
SinI	GGWCC	2 cut(s)	110, 134
SlaI	CTCGAG	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	2 cut(s)	185, 398
SmoI	CTYRAG	2 cut(s)	185, 398
Sse9I	AATT	2 cut(s)	47, 549
SsiI	CCGC	7 cut(s)	113, 137, 349, 358, 406, 448, 481
SstI	GAGCTC	1 cut(s)	79
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	5 cut(s)	51, 55, 128, 186, 534
TasI	AATT	2 cut(s)	47, 549
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	4 cut(s)	17, 460, 463, 566
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	560
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	2 cut(s)	110, 134
XapI	RAATTY	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.