AT3G07750

Exosome complex component RRP42-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004112
Physical Location & Seq
Forward (+)
2473194 .. 2475575
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07750.2

Sequence Viewer

Length: 861 bp
ATGGGGCTTTCTCTTGGGGAACAACATTTCATTAAAGGTGGGATTGCTCAAGATCTTCGAACTGATGGTCGGAAAAGATTGACTTACCGTCCTATCTACGTCGAAACCGGTGTTATTCCGCAGGCTAATGGTTCAGCGAGAGTTAGAATTGGTGGAACCGATGTGATTGCTAGTGTAAAGGCTGAAATTGGGAGGCCAAGTTCACTTCAACCCGATAAAGGAAAGGTTGCAGTTTTCATTGATTGCAGTCCAACAGCTGAACCGACATTTGGGGGGAGAGGAGGTGAGGAATTGTCTTCTGAGCTTGCTTTGGCTCTTCAAAGATGTCTTCTGGGTGGCAAAAGTGGAGCAGGAGCTGGAATAAATTTATCTTCGCTTTTAATCAAAGAAGGAAAAGTTTGCTGGGACCTTTATATTGATGGTCTTGTCATTAGTTCGGATGGGAATCTATTGGATGCCCTGGGTGCTGCCATTAAGGCTGCTTTAACCAACACGGCCATCCCAAAAGTCAATGTTTCAGCTGAAGTAGCAGATGATGAGCAACCAGAGATTGACATCAGCGACGAGGAATATCTTCAATTTGACACTTCCAGTGTCCCGGTCATAGTCACGTTAACAAAAGTGGGAACGCATTACATAGTTGATGCAACAGCAGAAGAGGAGTCTCAGATGAGCTCAGCTGTATCTATATCTGTGAATCGGACAGGCCATATATGTGGGTTAACCAAACGAAGCGGGTCTGGCTTAGACCCAAGCGTCATCCTTGACATGATCTCTGTTGCCAAGCATGTGACAGAGACTCTGATGAGCAAACTTGATTCAGAGATTTCAGCCGCAGAGGCCTGCGAAGACGAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

286

Amino Acids

29.96

Weight (kDa)

4.69

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 29 - 168 7.1e-26 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 199 - 262 1.4e-12 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 755
AciI CCGC 3 cut(s) 119, 735, 834
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 543
AfiI CCNNNNNNNGG 2 cut(s) 218, 269
AgeI ACCGGT 1 cut(s) 107
AgsI TTSAA 3 cut(s) 209, 320, 578
AhdI GACNNNNNGTC 1 cut(s) 87
AjnI CCWGG 1 cut(s) 459
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AloI GAACNNNNNNTCC 2 cut(s) 184, 216
AluBI AGCT 6 cut(s) 257, 304, 356, 521, 675, 680
AluI AGCT 6 cut(s) 257, 304, 356, 521, 675, 680
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 2 cut(s) 669, 791
AlwNI CAGNNNCTG 1 cut(s) 356
AoxI GGCC 4 cut(s) 194, 495, 706, 840
ApeKI GCWGC 2 cut(s) 467, 479
ApoI RAATTY 1 cut(s) 364
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
AsiGI ACCGGT 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 573
AspS9I GGNCC 1 cut(s) 406
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 677
BbsI GAAGAC 3 cut(s) 288, 320, 855
Bbv12I GWGCWC 1 cut(s) 677
BbvI GCAGC 2 cut(s) 454, 466
BccI CCATC 4 cut(s) 59, 413, 434, 506
BceAI ACGGC 1 cut(s) 510
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BciT130I CCWGG 1 cut(s) 461
BcnI CCSGG 1 cut(s) 599
BcoDI GTCTC 2 cut(s) 669, 791
BfaI CTAG 1 cut(s) 171
BglI GCCNNNNNGGC 2 cut(s) 476, 839
BglII AGATCT 1 cut(s) 52
BisI GCNGC 3 cut(s) 468, 480, 834
BlpI GCTNAGC 1 cut(s) 676
BlsI GCNGC 3 cut(s) 469, 481, 835
Bme1390I CCNGG 2 cut(s) 461, 599
Bme18I GGWCC 1 cut(s) 406
BmeRI GACNNNNNGTC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 2 cut(s) 157, 407
BmrFI CCNGG 2 cut(s) 461, 599
BmsI GCATC 2 cut(s) 445, 634
BpiI GAAGAC 3 cut(s) 288, 320, 855
Bpu1102I GCTNAGC 1 cut(s) 676
Bpu14I TTCGAA 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 599
BsaBI GATNNNNATC 2 cut(s) 444, 554
BsaJI CCNNGG 2 cut(s) 459, 460
BsaWI WCCGGW 1 cut(s) 107
BsaXI ACNNNNNCTCC 4 cut(s) 184, 214, 268, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 269
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 591
Bse8I GATNNNNATC 2 cut(s) 444, 554
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 2 cut(s) 459, 460
BseGI GGATG 4 cut(s) 445, 460, 498, 759
BseJI GATNNNNATC 2 cut(s) 444, 554
BseLI CCNNNNNNNGG 2 cut(s) 218, 269
BseMII CTCAG 3 cut(s) 291, 680, 690
BseNI ACTGG 1 cut(s) 591
BseRI GAGGAG 2 cut(s) 294, 674
BseXI GCAGC 2 cut(s) 454, 466
BseYI CCCAGC 1 cut(s) 402
BshFI GGCC 4 cut(s) 196, 497, 708, 842
BshTI ACCGGT 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 677
BsiSI CCGG 2 cut(s) 108, 599
BslFI GGGAC 2 cut(s) 419, 581
BslI CCNNNNNNNGG 2 cut(s) 218, 269
BsmAI GTCTC 2 cut(s) 669, 791
BsmFI GGGAC 2 cut(s) 419, 581
BsnI GGCC 4 cut(s) 196, 497, 708, 842
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 677
Bsp143I GATC 2 cut(s) 52, 771
Bsp1720I GCTNAGC 1 cut(s) 676
BspACI CCGC 3 cut(s) 119, 735, 834
BspANI GGCC 4 cut(s) 196, 497, 708, 842
BspCNI CTCAG 3 cut(s) 292, 679, 689
BspLI GGNNCC 2 cut(s) 157, 407
BspQI GCTCTTC 1 cut(s) 321
BspT104I TTCGAA 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 591
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 459, 460
BssMI GATC 2 cut(s) 52, 771
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 321, 651
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 3 cut(s) 123, 306, 844
BstDEI CTNAG 4 cut(s) 300, 666, 676, 745
BstF5I GGATG 4 cut(s) 445, 460, 498, 759
BstKTI GATC 2 cut(s) 55, 774
BstMAI GTCTC 2 cut(s) 669, 791
BstMBI GATC 2 cut(s) 52, 771
BstMWI GCNNNNNNNGC 5 cut(s) 464, 476, 527, 741, 839
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 2 cut(s) 459, 597
BstV1I GCAGC 2 cut(s) 454, 466
BstV2I GAAGAC 3 cut(s) 288, 320, 855
BstX2I RGATCY 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 716
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 4 cut(s) 196, 497, 708, 842
BtsCI GGATG 4 cut(s) 445, 460, 498, 759
BtsIMutI CAGTG 1 cut(s) 598
Cac8I GCNNGC 3 cut(s) 123, 306, 844
CaiI CAGNNNCTG 1 cut(s) 356
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 406
CseI GACGC 1 cut(s) 745
CspAI ACCGGT 1 cut(s) 107
CviAII CATG 2 cut(s) 769, 788
DdeI CTNAG 4 cut(s) 300, 666, 676, 745
DpnI GATC 2 cut(s) 54, 773
DpnII GATC 2 cut(s) 52, 771
DrdI GACNNNNNNGTC 1 cut(s) 755
DriI GACNNNNNGTC 1 cut(s) 87
DseDI GACNNNNNNGTC 1 cut(s) 755
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 2 cut(s) 321, 651
Eam1105I GACNNNNNGTC 1 cut(s) 87
EarI CTCTTC 2 cut(s) 321, 651
Ecl136II GAGCTC 1 cut(s) 675
Eco147I AGGCCT 1 cut(s) 842
Eco24I GRGCYC 1 cut(s) 677
Eco47I GGWCC 1 cut(s) 406
Eco53kI GAGCTC 1 cut(s) 675
Eco57I CTGAAG 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 677
FaeI CATG 2 cut(s) 772, 791
FaiI YATR 9 cut(s) 414, 605, 638, 689, 711, 713, 715, 770, 789
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FaqI GGGAC 2 cut(s) 419, 581
FatI CATG 2 cut(s) 768, 787
FauI CCCGC 1 cut(s) 728
Fnu4HI GCNGC 3 cut(s) 468, 480, 834
FokI GGATG 4 cut(s) 452, 467, 485, 746
FriOI GRGCYC 1 cut(s) 677
Fsp4HI GCNGC 3 cut(s) 468, 480, 834
FspBI CTAG 1 cut(s) 171
GluI GCNGC 3 cut(s) 468, 480, 834
GsaI CCCAGC 1 cut(s) 406
HaeIII GGCC 4 cut(s) 196, 497, 708, 842
HapII CCGG 2 cut(s) 108, 599
HgaI GACGC 1 cut(s) 745
Hin1II CATG 2 cut(s) 772, 791
HincII GTYRAC 2 cut(s) 615, 723
HindII GTYRAC 2 cut(s) 615, 723
HinfI GANTC 6 cut(s) 445, 662, 697, 799, 818, 854
HpaI GTTAAC 2 cut(s) 615, 723
HpaII CCGG 2 cut(s) 108, 599
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 3 cut(s) 203, 615, 723
Hpy188I TCNGA 7 cut(s) 72, 301, 439, 669, 702, 804, 823
Hpy188III TCNNGA 2 cut(s) 50, 858
Hpy8I GTNNAC 3 cut(s) 203, 615, 723
Hpy99I CGWCG 2 cut(s) 104, 566
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 2 cut(s) 99, 611
HpyCH4V TGCA 3 cut(s) 230, 246, 647
HpyF10VI GCNNNNNNNGC 5 cut(s) 464, 476, 527, 741, 839
HpyF3I CTNAG 4 cut(s) 300, 666, 676, 745
HpySE526I ACGT 2 cut(s) 99, 611
Hsp92II CATG 2 cut(s) 772, 791
KspAI GTTAAC 2 cut(s) 615, 723
Kzo9I GATC 2 cut(s) 52, 771
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 2 cut(s) 347, 353
Lsp1109I GCAGC 2 cut(s) 454, 466
LweI GCATC 2 cut(s) 445, 634
MaeI CTAG 1 cut(s) 171
MaeII ACGT 2 cut(s) 99, 611
MaeIII GTNAC 2 cut(s) 607, 790
MalI GATC 2 cut(s) 54, 773
MboI GATC 2 cut(s) 52, 771
MboII GAAGA 8 cut(s) 47, 288, 308, 320, 363, 566, 668, 860
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 677
MluCI AATT 5 cut(s) 147, 186, 290, 364, 578
MlyI GAGTC 2 cut(s) 671, 793
MmeI TCCRAC 2 cut(s) 50, 275
MnlI CCTC 7 cut(s) 186, 272, 275, 280, 559, 652, 832
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 6 cut(s) 33, 380, 474, 485, 614, 722
MslI CAYNNNNRTG 1 cut(s) 714
MspA1I CMGCKG 3 cut(s) 257, 521, 680
MspI CCGG 2 cut(s) 108, 599
MspR9I CCNGG 2 cut(s) 461, 599
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 5 cut(s) 464, 476, 527, 741, 839
NciI CCSGG 1 cut(s) 599
NdeII GATC 2 cut(s) 52, 771
NlaIII CATG 2 cut(s) 772, 791
NlaIV GGNNCC 2 cut(s) 157, 407
NmuCI GTSAC 2 cut(s) 607, 790
NspI RCATGY 1 cut(s) 791
NspV TTCGAA 1 cut(s) 58
PasI CCCWGGG 1 cut(s) 460
PceI AGGCCT 1 cut(s) 842
PciSI GCTCTTC 1 cut(s) 321
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 4 cut(s) 445, 697, 818, 854
PinAI ACCGGT 1 cut(s) 107
PkrI GCNGC 3 cut(s) 469, 481, 835
PleI GAGTC 2 cut(s) 670, 793
PpsI GAGTC 2 cut(s) 670, 793
PpuMI RGGWCCY 1 cut(s) 406
Psp124BI GAGCTC 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 459
PspFI CCCAGC 1 cut(s) 402
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 157, 407
PspPI GGNCC 1 cut(s) 406
PspPPI RGGWCCY 1 cut(s) 406
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 1 cut(s) 52
PvuII CAGCTG 3 cut(s) 257, 521, 680
RseI CAYNNNNRTG 1 cut(s) 714
SacI GAGCTC 1 cut(s) 677
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 6 cut(s) 33, 380, 474, 485, 614, 722
SatI GCNGC 3 cut(s) 468, 480, 834
Sau3AI GATC 2 cut(s) 52, 771
Sau96I GGNCC 1 cut(s) 406
SchI GAGTC 2 cut(s) 671, 793
ScrFI CCNGG 2 cut(s) 461, 599
SduI GDGCHC 1 cut(s) 677
SfaNI GCATC 2 cut(s) 445, 634
SfuI TTCGAA 1 cut(s) 58
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 714
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 5 cut(s) 147, 186, 290, 364, 578
SseBI AGGCCT 1 cut(s) 842
SsiI CCGC 3 cut(s) 119, 735, 834
SspMI CTAG 1 cut(s) 171
SstI GAGCTC 1 cut(s) 677
StuI AGGCCT 1 cut(s) 842
StyD4I CCNGG 2 cut(s) 459, 597
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 2 cut(s) 102, 614
TaqI TCGA 2 cut(s) 58, 102
TasI AATT 5 cut(s) 147, 186, 290, 364, 578
TauI GCSGC 1 cut(s) 836
TfiI GAWTC 4 cut(s) 445, 697, 818, 854
Tru1I TTAA 6 cut(s) 33, 380, 474, 485, 614, 722
Tru9I TTAA 6 cut(s) 33, 380, 474, 485, 614, 722
TscAI CASTG 1 cut(s) 598
TseFI GTSAC 2 cut(s) 607, 790
TseI GCWGC 2 cut(s) 467, 479
Tsp45I GTSAC 2 cut(s) 607, 790
TspDTI ATGAA 2 cut(s) 19, 226
TspRI CASTG 1 cut(s) 598
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.