Rh2DG539300

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004112
Physical Location & Seq
Forward (+)
76846406 .. 76850345
3940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG539300.1

Sequence Viewer

Length: 927 bp
ATGTTGATTGAGCTGCCTTTTGTTTTCAGAACTAATGGTTTCTTGCATATTGTATATTCAGAAATGGTGGGATTATCTATAGGAGAGAAGTATTTCATACAGGGTGGCATTGCTCAGGACCTTCGCACTGATGGTCGGAAAAGATTGACGCCTAGACCCATCTTTGTTGAAACTGGAGTCATTTCCCAGTCAAATGGTTCAGCAAGGGTCAGGATTGGTGCCACAGAAGTCATTGCCAGTGTGAAGGCTGAACTTGGAAGGCCGAGCGCATTGCATCCCGACAAAGGAAAAGTCTCTATAAATGTTGATTGCAGTCCAACTGCAGCACCAATGTTTGAGGGTAGAGGGGGTGAGGAGCTGTCCGCAGAACTCTCAGTTGCTCTTCAGCGTTGTCTATTAGGTGGTAAAAGTGGATCAGGTGCTGGAATTGACCTCTCTTCTCTGGCGATTGTGGAAGGAAAGATTTGTTGGGATCTTTACATTGAAGGCCTTGTTATTAGTTCAGACGGAAATCTACTAGATGCCCTAGGTGCTGCTATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAGAGTAAATGTTGCAGCTGGTGCATCAGGAGATGAGCAACCAGAGGTTGACGTAAGCGACGAGGAATTTCTGCAATTTGACACATCCAAGGTCCCTGTCATTGTTACATTAACGAAGGTAGGCAGGCACTATATTGTAGATGCCACATCAGAAGAGGAATCCCAAATGAGCTCAGCTGTTTCTATTTCAGTCAACAGGCAAGGGAACATATGTGGGTTGACAAAAAGGGGTGGTGCAGGCCTAGATCCAAGCGTCGTTCTTGACATGATATCTGTAGCACAAAGTGTAAGTGAGAGGCTGATAAACACATTGGATTCTCAGATAGCTGCGGCTGAAGCTGGTGAAGATGAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

308

Amino Acids

32.32

Weight (kDa)

4.72

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 52 - 190 4.9e-25 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 221 - 285 1.7e-13 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AciI CCGC 2 cut(s) 363, 899
AclWI GGATC 3 cut(s) 421, 480, 809
AcsI RAATTY 1 cut(s) 635
AcuI CTGAAG 2 cut(s) 368, 924
AcyI GRCGYC 1 cut(s) 149
AdeI CACNNNGTG 1 cut(s) 854
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 2 cut(s) 170, 485
AjuI GAANNNNNNNTTGG 2 cut(s) 451, 483
AluBI AGCT 7 cut(s) 13, 358, 587, 741, 746, 896, 908
AluI AGCT 7 cut(s) 13, 358, 587, 741, 746, 896, 908
Alw21I GWGCWC 1 cut(s) 743
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 3 cut(s) 421, 480, 809
AlwNI CAGNNNCTG 1 cut(s) 422
AoxI GGCC 3 cut(s) 260, 487, 808
ApeKI GCWGC 6 cut(s) 13, 323, 533, 545, 584, 896
ApoI RAATTY 1 cut(s) 635
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
Asp700I GAANNNNTTC 1 cut(s) 92
AspA2I CCTAGG 1 cut(s) 526
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 118, 661
AsuHPI GGTGA 2 cut(s) 362, 923
AvaII GGWCC 2 cut(s) 118, 661
AvrII CCTAGG 1 cut(s) 526
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 743
Bbv12I GWGCWC 1 cut(s) 743
BbvI GCAGC 5 cut(s) 335, 520, 532, 596, 883
BccI CCATC 2 cut(s) 125, 167
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 4 cut(s) 153, 518, 527, 812
BfmI CTRYAG 3 cut(s) 78, 321, 843
BisI GCNGC 7 cut(s) 14, 324, 534, 546, 585, 897, 900
BlnI CCTAGG 1 cut(s) 526
BlpI GCTNAGC 1 cut(s) 742
BlsI GCNGC 7 cut(s) 15, 325, 535, 547, 586, 898, 901
Bme18I GGWCC 2 cut(s) 118, 661
BmgT120I GGNCC 2 cut(s) 118, 661
BmiI GGNNCC 2 cut(s) 220, 663
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 5 cut(s) 283, 511, 573, 602, 700
BmuI ACTGGG 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 742
BsaHI GRCGYC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 526, 657
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 3 cut(s) 178, 187, 237
Bse3DI GCAATG 3 cut(s) 108, 231, 269
BseDI CCNNGG 2 cut(s) 526, 657
BseGI GGATG 3 cut(s) 274, 564, 653
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMI GCAATG 3 cut(s) 108, 231, 269
BseMII CTCAG 4 cut(s) 128, 387, 756, 902
BseNI ACTGG 3 cut(s) 178, 187, 237
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 5 cut(s) 335, 520, 532, 596, 883
BsgI GTGCAG 1 cut(s) 825
BshFI GGCC 3 cut(s) 262, 489, 810
BshNI GGYRCC 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 743
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 647
BsnI GGCC 3 cut(s) 262, 489, 810
Bsp1286I GDGCHC 1 cut(s) 743
Bsp143I GATC 3 cut(s) 413, 472, 814
Bsp1720I GCTNAGC 1 cut(s) 742
BspACI CCGC 2 cut(s) 363, 899
BspANI GGCC 3 cut(s) 262, 489, 810
BspCNI CTCAG 4 cut(s) 127, 386, 755, 901
BspLI GGNNCC 2 cut(s) 220, 663
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 3 cut(s) 421, 480, 809
BspQI GCTCTTC 1 cut(s) 387
BspT107I GGYRCC 1 cut(s) 218
BsrDI GCAATG 3 cut(s) 108, 231, 269
BsrI ACTGG 3 cut(s) 178, 187, 237
BssECI CCNNGG 2 cut(s) 526, 657
BssMI GATC 3 cut(s) 413, 472, 814
BssNI GRCGYC 1 cut(s) 149
BssT1I CCWWGG 2 cut(s) 526, 657
Bst6I CTCTTC 3 cut(s) 387, 442, 717
BstACI GRCGYC 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 695, 808
BstDEI CTNAG 4 cut(s) 114, 373, 742, 888
BstF5I GGATG 3 cut(s) 274, 564, 653
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 3 cut(s) 416, 475, 817
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 3 cut(s) 413, 472, 814
BstMWI GCNNNNNNNGC 5 cut(s) 530, 542, 561, 590, 905
BstSFI CTRYAG 3 cut(s) 78, 321, 843
BstV1I GCAGC 5 cut(s) 335, 520, 532, 596, 883
BstX2I RGATCY 2 cut(s) 472, 814
BstXI CCANNNNNNTGG 1 cut(s) 194
BstYI RGATCY 2 cut(s) 472, 814
BsuRI GGCC 3 cut(s) 262, 489, 810
BtsCI GGATG 3 cut(s) 274, 564, 653
BtsIMutI CAGTG 2 cut(s) 126, 244
Cac8I GCNNGC 2 cut(s) 695, 808
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 118, 661
CseI GACGC 2 cut(s) 157, 811
CviAII CATG 1 cut(s) 835
DdeI CTNAG 4 cut(s) 114, 373, 742, 888
DpnI GATC 3 cut(s) 415, 474, 816
DpnII GATC 3 cut(s) 413, 472, 814
DraIII CACNNNGTG 1 cut(s) 854
Eam1104I CTCTTC 3 cut(s) 387, 442, 717
EarI CTCTTC 3 cut(s) 387, 442, 717
Ecl136II GAGCTC 1 cut(s) 741
Eco130I CCWWGG 2 cut(s) 526, 657
Eco147I AGGCCT 2 cut(s) 489, 810
Eco24I GRGCYC 1 cut(s) 743
Eco32I GATATC 1 cut(s) 840
Eco47I GGWCC 2 cut(s) 118, 661
Eco53kI GAGCTC 1 cut(s) 741
Eco57I CTGAAG 2 cut(s) 368, 924
EcoICRI GAGCTC 1 cut(s) 741
EcoO109I RGGNCCY 2 cut(s) 118, 661
EcoRV GATATC 1 cut(s) 840
EcoT14I CCWWGG 2 cut(s) 526, 657
EcoT38I GRGCYC 1 cut(s) 743
ErhI CCWWGG 2 cut(s) 526, 657
FaeI CATG 1 cut(s) 838
FaiI YATR 9 cut(s) 48, 55, 80, 98, 299, 702, 779, 781, 836
FaqI GGGAC 1 cut(s) 647
FatI CATG 1 cut(s) 834
FauNDI CATATG 1 cut(s) 779
Fnu4HI GCNGC 7 cut(s) 14, 324, 534, 546, 585, 897, 900
FokI GGATG 3 cut(s) 261, 551, 640
FriOI GRGCYC 1 cut(s) 743
Fsp4HI GCNGC 7 cut(s) 14, 324, 534, 546, 585, 897, 900
FspBI CTAG 4 cut(s) 153, 518, 527, 812
GlaI GCGC 1 cut(s) 268
GluI GCNGC 7 cut(s) 14, 324, 534, 546, 585, 897, 900
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 3 cut(s) 262, 489, 810
HgaI GACGC 2 cut(s) 157, 811
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 1 cut(s) 838
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 3 cut(s) 619, 763, 789
HindII GTYRAC 3 cut(s) 619, 763, 789
HinfI GANTC 3 cut(s) 177, 728, 884
HphI GGTGA 2 cut(s) 362, 923
Hpy166II GTNNAC 3 cut(s) 619, 763, 789
Hpy188I TCNGA 6 cut(s) 29, 61, 138, 505, 721, 891
Hpy188III TCNNGA 5 cut(s) 116, 211, 278, 597, 830
Hpy8I GTNNAC 3 cut(s) 619, 763, 789
Hpy99I CGWCG 2 cut(s) 632, 827
HpyAV CCTTC 6 cut(s) 131, 238, 252, 449, 479, 679
HpyCH4IV ACGT 1 cut(s) 621
HpyCH4V TGCA 8 cut(s) 46, 274, 312, 323, 584, 593, 643, 806
HpyF10VI GCNNNNNNNGC 5 cut(s) 530, 542, 561, 590, 905
HpyF3I CTNAG 4 cut(s) 114, 373, 742, 888
HpySE526I ACGT 1 cut(s) 621
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 1 cut(s) 838
HspAI GCGC 1 cut(s) 267
Kzo9I GATC 3 cut(s) 413, 472, 814
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 5 cut(s) 335, 520, 532, 596, 883
LweI GCATC 5 cut(s) 283, 511, 573, 602, 700
MaeI CTAG 4 cut(s) 153, 518, 527, 812
MaeII ACGT 1 cut(s) 621
MaeIII GTNAC 1 cut(s) 673
MalI GATC 3 cut(s) 415, 474, 816
MboI GATC 3 cut(s) 413, 472, 814
MboII GAAGA 4 cut(s) 374, 429, 734, 926
MflI RGATCY 2 cut(s) 472, 814
MhlI GDGCHC 1 cut(s) 743
MluCI AATT 3 cut(s) 426, 635, 644
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 2 cut(s) 116, 341
MnlI CCTC 8 cut(s) 331, 338, 346, 443, 607, 625, 718, 858
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 2 cut(s) 540, 680
MspA1I CMGCKG 2 cut(s) 587, 746
MwoI GCNNNNNNNGC 5 cut(s) 530, 542, 561, 590, 905
NdeI CATATG 1 cut(s) 779
NdeII GATC 3 cut(s) 413, 472, 814
NlaIII CATG 1 cut(s) 838
NlaIV GGNNCC 2 cut(s) 220, 663
NmeAIII GCCGAG 1 cut(s) 288
PceI AGGCCT 2 cut(s) 489, 810
PciSI GCTCTTC 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 2 cut(s) 728, 884
PkrI GCNGC 7 cut(s) 15, 325, 535, 547, 586, 898, 901
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PpuMI RGGWCCY 2 cut(s) 118, 661
Psp124BI GAGCTC 1 cut(s) 743
Psp5II RGGWCCY 2 cut(s) 118, 661
PspN4I GGNNCC 2 cut(s) 220, 663
PspPI GGNCC 2 cut(s) 118, 661
PspPPI RGGWCCY 2 cut(s) 118, 661
PstI CTGCAG 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 2 cut(s) 472, 814
PvuII CAGCTG 2 cut(s) 587, 746
SacI GAGCTC 1 cut(s) 743
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 2 cut(s) 540, 680
SatI GCNGC 7 cut(s) 14, 324, 534, 546, 585, 897, 900
Sau3AI GATC 3 cut(s) 413, 472, 814
Sau96I GGNCC 2 cut(s) 118, 661
SchI GAGTC 1 cut(s) 186
SduI GDGCHC 1 cut(s) 743
SfaNI GCATC 5 cut(s) 283, 511, 573, 602, 700
SfcI CTRYAG 3 cut(s) 78, 321, 843
SinI GGWCC 2 cut(s) 118, 661
Sse9I AATT 3 cut(s) 426, 635, 644
SseBI AGGCCT 2 cut(s) 489, 810
SsiI CCGC 2 cut(s) 363, 899
SspMI CTAG 4 cut(s) 153, 518, 527, 812
SstI GAGCTC 1 cut(s) 743
StuI AGGCCT 2 cut(s) 489, 810
StyI CCWWGG 2 cut(s) 526, 657
TaiI ACGT 1 cut(s) 624
TasI AATT 3 cut(s) 426, 635, 644
TauI GCSGC 1 cut(s) 902
TfiI GAWTC 2 cut(s) 728, 884
Tru1I TTAA 2 cut(s) 540, 680
Tru9I TTAA 2 cut(s) 540, 680
TscAI CASTG 2 cut(s) 133, 244
TseI GCWGC 6 cut(s) 13, 323, 533, 545, 584, 896
TspDTI ATGAA 1 cut(s) 85
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 2 cut(s) 133, 244
VpaK11BI GGWCC 2 cut(s) 118, 661
XapI RAATTY 1 cut(s) 635
XmaJI CCTAGG 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 4 cut(s) 153, 518, 527, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.