Prupe.6G340200_v2.0.a1

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0004112
Physical Location & Seq
Forward (+)
29404643 .. 29409734
5092 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G340200.3

Sequence Viewer

Length: 939 bp
ATGCAATGCCACCACCGCCACCAACACAGCCTTCTCTCATTCATTAGGCCTTTGTCAGCATCATCTCTGCTCGAAATGGTGGGACTATCCATAGGAGAAAAGCATTTTATACAGGGTGGCATTGCTCAGGATCTTCGATCTGATGGCCGAAAAAGATTGACAATTCGGCCCATCTATGTTGAAACTGGAGTCATTTCCCAGGCAAATGGTTCAGCAAGGGTCAGGATGGGTGCCACAGATGTCATTGCCTGTGTGAAGGCAGAACTTGGAAGGCCGAATGCGTTGCAACCTGACAAAGGAAAGGTCGTTGTGAATGTTGATTGCAGTCCCACTGCAGCACCAATGTTTGAGGGTAGAGGGGGTGAGGAGCTGTCAGCAGAACTCTCAGTTGCTCTTCAACGTTGTCTCTTGGGTGGTAAAAGTGGATCTGGTGCTGGAATTGATCTCTCCTCTCTGGTAGTTGTGGAAGGAAAGATCTGTTGGGATCTTTACATCGATGGCCTTGTTGTTAGTTCAGATGGGAATCTGCTAGATGCCCTTGGTGCTGCTATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAAAGTAAATGTTGCAGCTGGTGCATCAGGCGATGAGCAACCAGAGGTTGACGTAAGCGATGAGGAATTTCTGCAATTTGACACATCTAGGGTCCCTGTCATAGTTACATTAACAAAGGTAGGCAGGCACTATATTGTAGATGCCACTTCAGAAGAGGAATCACAAATGTGCTTGGCTGTTTCTATTTCCATCAATAGGCAAGGCCACATTTGTGGGTTGACAAAACGGGGAGGTGCCGGCCTAGATCCAAGCATCATTCTTGACATGATATCTGTGGCAAAAACAGTAAGTGAGCAGCTGATAAACACATTGGATTCTCATATAGCTGCTGCTGAAGCTGGCGAAGAGGAGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

313

Amino Acids

32.81

Weight (kDa)

5.13

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 230, 815
AciI CCGC 1 cut(s) 16
AclI AACGTT 1 cut(s) 400
AclWI GGATC 4 cut(s) 138, 433, 492, 821
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 1 cut(s) 647
AcuI CTGAAG 2 cut(s) 714, 936
AfiI CCNNNNNNNGG 2 cut(s) 296, 777
AgsI TTSAA 2 cut(s) 182, 398
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 4 cut(s) 15, 47, 463, 495
AleI CACNNNNGTG 2 cut(s) 748, 792
AluBI AGCT 5 cut(s) 370, 599, 880, 908, 920
AluI AGCT 5 cut(s) 370, 599, 880, 908, 920
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 4 cut(s) 138, 433, 492, 821
AoxI GGCC 7 cut(s) 47, 145, 167, 272, 499, 784, 820
ApeKI GCWGC 7 cut(s) 335, 545, 557, 596, 877, 908, 911
ApoI RAATTY 1 cut(s) 647
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
AspS9I GGNCC 2 cut(s) 168, 673
AsuHPI GGTGA 1 cut(s) 374
AvaII GGWCC 1 cut(s) 673
BanI GGYRCC 2 cut(s) 230, 815
BbvI GCAGC 7 cut(s) 347, 532, 544, 608, 889, 895, 898
BccI CCATC 6 cut(s) 137, 179, 220, 491, 512, 779
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 3 cut(s) 530, 669, 824
BfmI CTRYAG 1 cut(s) 333
BglII AGATCT 1 cut(s) 474
BisI GCNGC 7 cut(s) 336, 546, 558, 597, 878, 909, 912
BlsI GCNGC 7 cut(s) 337, 547, 559, 598, 879, 910, 913
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 673
BmgT120I GGNCC 2 cut(s) 168, 673
BmiI GGNNCC 4 cut(s) 232, 674, 675, 817
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 6 cut(s) 68, 523, 585, 614, 712, 843
BpmI CTGGAG 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 126
Bsa29I ATCGAT 1 cut(s) 495
BsaBI GATNNNNATC 1 cut(s) 522
BsaJI CCNNGG 2 cut(s) 198, 538
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 777
Bse118I RCCGGY 1 cut(s) 818
Bse1I ACTGG 1 cut(s) 190
Bse3DI GCAATG 3 cut(s) 11, 120, 243
Bse8I GATNNNNATC 1 cut(s) 522
BseBI CCWGG 1 cut(s) 200
BseCI ATCGAT 1 cut(s) 495
BseDI CCNNGG 2 cut(s) 198, 538
BseGI GGATG 2 cut(s) 231, 576
BseJI GATNNNNATC 1 cut(s) 522
BseLI CCNNNNNNNGG 2 cut(s) 296, 777
BseMI GCAATG 3 cut(s) 11, 120, 243
BseMII CTCAG 2 cut(s) 140, 399
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 2 cut(s) 380, 439
BseXI GCAGC 7 cut(s) 347, 532, 544, 608, 889, 895, 898
BshFI GGCC 7 cut(s) 49, 147, 169, 274, 501, 786, 822
BshNI GGYRCC 2 cut(s) 230, 815
BshVI ATCGAT 1 cut(s) 495
BsiSI CCGG 1 cut(s) 819
BslFI GGGAC 3 cut(s) 96, 312, 659
BslI CCNNNNNNNGG 2 cut(s) 296, 777
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 3 cut(s) 96, 312, 659
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 7 cut(s) 49, 147, 169, 274, 501, 786, 822
Bsp143I GATC 7 cut(s) 130, 137, 425, 442, 474, 484, 826
BspACI CCGC 1 cut(s) 16
BspANI GGCC 7 cut(s) 49, 147, 169, 274, 501, 786, 822
BspCNI CTCAG 2 cut(s) 139, 398
BspDI ATCGAT 1 cut(s) 495
BspLI GGNNCC 4 cut(s) 232, 674, 675, 817
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 4 cut(s) 138, 433, 492, 821
BspQI GCTCTTC 1 cut(s) 399
BspT107I GGYRCC 2 cut(s) 230, 815
BsrDI GCAATG 3 cut(s) 11, 120, 243
BsrFI RCCGGY 1 cut(s) 818
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 818
BssECI CCNNGG 2 cut(s) 198, 538
BssMI GATC 7 cut(s) 130, 137, 425, 442, 474, 484, 826
BssT1I CCWWGG 1 cut(s) 538
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 868
Bst6I CTCTTC 3 cut(s) 399, 729, 921
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 3 cut(s) 707, 820, 922
BstDEI CTNAG 2 cut(s) 126, 385
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 231, 576
BstKTI GATC 7 cut(s) 133, 140, 428, 445, 477, 487, 829
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 7 cut(s) 130, 137, 425, 442, 474, 484, 826
BstMWI GCNNNNNNNGC 6 cut(s) 15, 542, 554, 573, 602, 917
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 7 cut(s) 347, 532, 544, 608, 889, 895, 898
BstX2I RGATCY 5 cut(s) 130, 425, 474, 484, 826
BstXI CCANNNNNNTGG 2 cut(s) 206, 794
BstYI RGATCY 5 cut(s) 130, 425, 474, 484, 826
Bsu15I ATCGAT 1 cut(s) 495
BsuRI GGCC 7 cut(s) 49, 147, 169, 274, 501, 786, 822
BsuTUI ATCGAT 1 cut(s) 495
BtgZI GCGATG 2 cut(s) 627, 654
BtsCI GGATG 2 cut(s) 231, 576
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 3 cut(s) 707, 820, 922
Cfr10I RCCGGY 1 cut(s) 818
Cfr13I GGNCC 2 cut(s) 168, 673
ClaI ATCGAT 1 cut(s) 495
CviAII CATG 1 cut(s) 847
DdeI CTNAG 2 cut(s) 126, 385
DpnI GATC 7 cut(s) 132, 139, 427, 444, 476, 486, 828
DpnII GATC 7 cut(s) 130, 137, 425, 442, 474, 484, 826
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 3 cut(s) 399, 729, 921
EarI CTCTTC 3 cut(s) 399, 729, 921
Eco130I CCWWGG 1 cut(s) 538
Eco147I AGGCCT 1 cut(s) 49
Eco32I GATATC 1 cut(s) 852
Eco47I GGWCC 1 cut(s) 673
Eco57I CTGAAG 2 cut(s) 714, 936
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 673
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 852
EcoT14I CCWWGG 1 cut(s) 538
ErhI CCWWGG 1 cut(s) 538
FaeI CATG 1 cut(s) 850
FaiI YATR 8 cut(s) 92, 110, 177, 683, 714, 848, 903, 905
FaqI GGGAC 3 cut(s) 96, 312, 659
FatI CATG 1 cut(s) 846
Fnu4HI GCNGC 7 cut(s) 336, 546, 558, 597, 878, 909, 912
FokI GGATG 2 cut(s) 238, 563
Fsp4HI GCNGC 7 cut(s) 336, 546, 558, 597, 878, 909, 912
FspBI CTAG 3 cut(s) 530, 669, 824
GluI GCNGC 7 cut(s) 336, 546, 558, 597, 878, 909, 912
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 7 cut(s) 49, 147, 169, 274, 501, 786, 822
HapII CCGG 1 cut(s) 819
Hin1II CATG 1 cut(s) 850
HincII GTYRAC 2 cut(s) 631, 801
HindII GTYRAC 2 cut(s) 631, 801
HinfI GANTC 5 cut(s) 189, 523, 740, 896, 932
HpaII CCGG 1 cut(s) 819
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 2 cut(s) 631, 801
Hpy188I TCNGA 3 cut(s) 142, 517, 733
Hpy188III TCNNGA 4 cut(s) 128, 223, 842, 936
Hpy8I GTNNAC 2 cut(s) 631, 801
HpyAV CCTTC 4 cut(s) 41, 250, 264, 461
HpyCH4III ACNGT 1 cut(s) 868
HpyCH4IV ACGT 2 cut(s) 400, 633
HpyCH4V TGCA 7 cut(s) 4, 286, 324, 335, 596, 605, 655
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 542, 554, 573, 602, 917
HpyF3I CTNAG 2 cut(s) 126, 385
HpySE526I ACGT 2 cut(s) 400, 633
Hsp92II CATG 1 cut(s) 850
KflI GGGWCCC 1 cut(s) 673
KroI GCCGGC 1 cut(s) 818
KroNI GCCGGC 1 cut(s) 820
Kzo9I GATC 7 cut(s) 130, 137, 425, 442, 474, 484, 826
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 1 cut(s) 367
Lsp1109I GCAGC 7 cut(s) 347, 532, 544, 608, 889, 895, 898
LweI GCATC 6 cut(s) 68, 523, 585, 614, 712, 843
MaeI CTAG 3 cut(s) 530, 669, 824
MaeII ACGT 2 cut(s) 400, 633
MaeIII GTNAC 1 cut(s) 685
MalI GATC 7 cut(s) 132, 139, 427, 444, 476, 486, 828
MboI GATC 7 cut(s) 130, 137, 425, 442, 474, 484, 826
MboII GAAGA 4 cut(s) 125, 386, 746, 938
MflI RGATCY 5 cut(s) 130, 425, 474, 484, 826
MluCI AATT 4 cut(s) 162, 438, 647, 656
MlyI GAGTC 1 cut(s) 198
MnlI CCTC 9 cut(s) 343, 350, 358, 460, 619, 637, 730, 806, 922
MroNI GCCGGC 1 cut(s) 818
MseI TTAA 2 cut(s) 552, 692
MslI CAYNNNNRTG 2 cut(s) 748, 792
MspA1I CMGCKG 2 cut(s) 599, 880
MspI CCGG 1 cut(s) 819
MspR9I CCNGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 6 cut(s) 15, 542, 554, 573, 602, 917
NaeI GCCGGC 1 cut(s) 820
NdeII GATC 7 cut(s) 130, 137, 425, 442, 474, 484, 826
NgoMIV GCCGGC 1 cut(s) 818
NlaIII CATG 1 cut(s) 850
NlaIV GGNNCC 4 cut(s) 232, 674, 675, 817
OliI CACNNNNGTG 2 cut(s) 748, 792
PceI AGGCCT 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 399
PctI GAATGC 1 cut(s) 283
PdiI GCCGGC 1 cut(s) 820
PfeI GAWTC 3 cut(s) 523, 740, 896
PkrI GCNGC 7 cut(s) 337, 547, 559, 598, 879, 910, 913
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PpuMI RGGWCCY 1 cut(s) 673
Psp1406I AACGTT 1 cut(s) 400
Psp5II RGGWCCY 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 4 cut(s) 232, 674, 675, 817
PspPI GGNCC 2 cut(s) 168, 673
PspPPI RGGWCCY 1 cut(s) 673
PstI CTGCAG 1 cut(s) 337
PsuI RGATCY 5 cut(s) 130, 425, 474, 484, 826
PvuII CAGCTG 2 cut(s) 599, 880
RseI CAYNNNNRTG 2 cut(s) 748, 792
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 2 cut(s) 552, 692
SatI GCNGC 7 cut(s) 336, 546, 558, 597, 878, 909, 912
Sau3AI GATC 7 cut(s) 130, 137, 425, 442, 474, 484, 826
Sau96I GGNCC 2 cut(s) 168, 673
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 200
SfaNI GCATC 6 cut(s) 68, 523, 585, 614, 712, 843
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 673
SmiMI CAYNNNNRTG 2 cut(s) 748, 792
Sse9I AATT 4 cut(s) 162, 438, 647, 656
SseBI AGGCCT 1 cut(s) 49
SsiI CCGC 1 cut(s) 16
SspMI CTAG 3 cut(s) 530, 669, 824
StuI AGGCCT 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 538
TaaI ACNGT 1 cut(s) 868
TaiI ACGT 2 cut(s) 403, 636
TaqI TCGA 3 cut(s) 72, 136, 495
TasI AATT 4 cut(s) 162, 438, 647, 656
TfiI GAWTC 3 cut(s) 523, 740, 896
Tru1I TTAA 2 cut(s) 552, 692
Tru9I TTAA 2 cut(s) 552, 692
TscAI CASTG 1 cut(s) 337
TseI GCWGC 7 cut(s) 335, 545, 557, 596, 877, 908, 911
TspDTI ATGAA 1 cut(s) 31
TspRI CASTG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 673
XagI CCTNNNNNAGG 1 cut(s) 294
XapI RAATTY 1 cut(s) 647
XspI CTAG 3 cut(s) 530, 669, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.