FvH4_6g40740

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004112
Physical Location & Seq
Forward (+)
32182194 .. 32186315
4122 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40740.t1

Sequence Viewer

Length: 864 bp
ATGGTGGGATTATCTGTAGGAGAAAAGTATTTCATACAGGGTGGCATTGCTCAGGACCTTCGCAGTGATGGTCGGAAAAGATTGACACCTAGGCCCATGTTTGTTGAAACTGGAGTCATCTCCCAGTCAAATGGTTCATCAAGGTTCAGGATTGGTGCCACCGAAGTCATTGCCAGTGTGAAGGCTGAACTTGGAAGGCCAAGCGCATTACATCCTGACAAAGGAAAGGTCTTCATAAATGTTGATTGCAGTCCAACTGCAGCACCAATATTTGAGGGCAGAGGGGGTGAAGAGCTATCCGCAGAACTCTCAGTTGCTCTTCAGCGTTGTCTATTGGGCGGTAAAAGTGGATCAGGTGCTGGAATTGATCTCTCTTCTCTGGCAATTGTGGATGGAAAGATTTGTTGGGATCTTTACATTGAAGGCCTTGTTGTTAGCTCAGACGGAAATCTACTAGATGCCCTAGGTGCTGCTATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAGAGTAAATGTTGCAGCTGGTGTGGAAGGAGATGACCAACCAGAGGTTGACGTAAGTGATGAGGAATTTCTGCAGTTTGACACAACCAAAGTCCCCGTCATTGTTACATTAACGGAGGTCGGTAGGCACTATATTGTAGATGCGACATCAGAAGAGGAATCCCAAATGAACTCGGCTGTTTCTATATCAGTCAACAGGCAAGGGAACATATGTGGGTTGACAAAAAGGGGTGGTGCGGGACTAGATCCAAGCATCATTCTTGACATGATATCTGTGGCACAAAGCGTAAGTGAGAGGCTGATAAACACATTGGATTCAAAGATAGCCGCGGCTGAAGCTGGTGAAGATGTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

288

Amino Acids

29.97

Weight (kDa)

4.62

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 31 - 169 1.7e-23 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 200 - 264 1.4e-12 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AccII CGCG 1 cut(s) 836
AciI CCGC 5 cut(s) 300, 339, 743, 834, 836
AclWI GGATC 3 cut(s) 358, 417, 746
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 2 cut(s) 305, 861
AfiI CCNNNNNNNGG 2 cut(s) 221, 550
AgsI TTSAA 3 cut(s) 107, 422, 825
AjuI GAANNNNNNNTTGG 2 cut(s) 388, 420
AluBI AGCT 4 cut(s) 295, 438, 524, 845
AluI AGCT 4 cut(s) 295, 438, 524, 845
AlwI GGATC 3 cut(s) 358, 417, 746
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 3 cut(s) 92, 197, 424
ApeKI GCWGC 4 cut(s) 260, 470, 482, 521
ApoI RAATTY 1 cut(s) 572
ArsI GACNNNNNNTTYG 4 cut(s) 213, 245, 588, 620
AspA2I CCTAGG 2 cut(s) 89, 463
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 55, 93
AsuHPI GGTGA 2 cut(s) 299, 860
AvaII GGWCC 1 cut(s) 55
AvrII CCTAGG 2 cut(s) 89, 463
BanI GGYRCC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 223
BbvI GCAGC 4 cut(s) 272, 457, 469, 533
BccI CCATC 2 cut(s) 62, 386
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BfaI CTAG 4 cut(s) 90, 455, 464, 749
BfmI CTRYAG 3 cut(s) 15, 258, 578
BisI GCNGC 6 cut(s) 261, 471, 483, 522, 834, 837
BlnI CCTAGG 2 cut(s) 89, 463
BlsI GCNGC 6 cut(s) 262, 472, 484, 523, 835, 838
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 55, 93
BmiI GGNNCC 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 4 cut(s) 448, 510, 637, 768
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 89, 463, 834
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 550
Bse1I ACTGG 3 cut(s) 115, 124, 174
Bse3DI GCAATG 2 cut(s) 45, 168
BseDI CCNNGG 3 cut(s) 89, 463, 834
BseGI GGATG 3 cut(s) 211, 397, 501
BseLI CCNNNNNNNGG 2 cut(s) 221, 550
BseMI GCAATG 2 cut(s) 45, 168
BseMII CTCAG 3 cut(s) 65, 324, 453
BseNI ACTGG 3 cut(s) 115, 124, 174
BseXI GCAGC 4 cut(s) 272, 457, 469, 533
Bsh1236I CGCG 1 cut(s) 836
BshFI GGCC 3 cut(s) 94, 199, 426
BshNI GGYRCC 1 cut(s) 155
BslFI GGGAC 2 cut(s) 584, 759
BslI CCNNNNNNNGG 2 cut(s) 221, 550
BsmFI GGGAC 2 cut(s) 584, 759
BsnI GGCC 3 cut(s) 94, 199, 426
Bsp143I GATC 4 cut(s) 350, 367, 409, 751
BspACI CCGC 5 cut(s) 300, 339, 743, 834, 836
BspANI GGCC 3 cut(s) 94, 199, 426
BspCNI CTCAG 3 cut(s) 64, 323, 452
BspFNI CGCG 1 cut(s) 836
BspLI GGNNCC 1 cut(s) 157
BspMAI CTGCAG 2 cut(s) 262, 582
BspPI GGATC 3 cut(s) 358, 417, 746
BspQI GCTCTTC 2 cut(s) 285, 324
BspT107I GGYRCC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 45, 168
BsrI ACTGG 3 cut(s) 115, 124, 174
BssECI CCNNGG 3 cut(s) 89, 463, 834
BssMI GATC 4 cut(s) 350, 367, 409, 751
BssT1I CCWWGG 2 cut(s) 89, 463
Bst6I CTCTTC 4 cut(s) 285, 324, 379, 654
BstDEI CTNAG 3 cut(s) 51, 310, 439
BstDSI CCRYGG 1 cut(s) 834
BstENI CCTNNNNNAGG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 211, 397, 501
BstFNI CGCG 1 cut(s) 836
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 4 cut(s) 353, 370, 412, 754
BstMBI GATC 4 cut(s) 350, 367, 409, 751
BstMWI GCNNNNNNNGC 4 cut(s) 467, 479, 498, 842
BstSFI CTRYAG 3 cut(s) 15, 258, 578
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 4 cut(s) 272, 457, 469, 533
BstV2I GAAGAC 1 cut(s) 223
BstX2I RGATCY 2 cut(s) 409, 751
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 2 cut(s) 409, 751
BsuRI GGCC 3 cut(s) 94, 199, 426
BtgI CCRYGG 1 cut(s) 834
BtsCI GGATG 3 cut(s) 211, 397, 501
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 2 cut(s) 70, 181
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 55, 93
Cfr42I CCGCGG 1 cut(s) 837
CviAII CATG 2 cut(s) 97, 772
DdeI CTNAG 3 cut(s) 51, 310, 439
DpnI GATC 4 cut(s) 352, 369, 411, 753
DpnII GATC 4 cut(s) 350, 367, 409, 751
Eam1104I CTCTTC 4 cut(s) 285, 324, 379, 654
EarI CTCTTC 4 cut(s) 285, 324, 379, 654
Eco130I CCWWGG 2 cut(s) 89, 463
Eco147I AGGCCT 1 cut(s) 426
Eco32I GATATC 1 cut(s) 777
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 305, 861
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 55
EcoRV GATATC 1 cut(s) 777
EcoT14I CCWWGG 2 cut(s) 89, 463
ErhI CCWWGG 2 cut(s) 89, 463
FaeI CATG 2 cut(s) 100, 775
FaiI YATR 8 cut(s) 35, 98, 236, 639, 692, 716, 718, 773
FaqI GGGAC 2 cut(s) 584, 759
FatI CATG 2 cut(s) 96, 771
FauI CCCGC 1 cut(s) 736
FauNDI CATATG 1 cut(s) 716
Fnu4HI GCNGC 6 cut(s) 261, 471, 483, 522, 834, 837
FokI GGATG 3 cut(s) 198, 404, 488
Fsp4HI GCNGC 6 cut(s) 261, 471, 483, 522, 834, 837
FspBI CTAG 4 cut(s) 90, 455, 464, 749
GlaI GCGC 1 cut(s) 205
GluI GCNGC 6 cut(s) 261, 471, 483, 522, 834, 837
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 3 cut(s) 94, 199, 426
HhaI GCGC 1 cut(s) 206
Hin1II CATG 2 cut(s) 100, 775
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HincII GTYRAC 3 cut(s) 556, 700, 726
HindII GTYRAC 3 cut(s) 556, 700, 726
HinfI GANTC 3 cut(s) 114, 665, 821
HphI GGTGA 2 cut(s) 299, 860
Hpy166II GTNNAC 3 cut(s) 556, 700, 726
Hpy188I TCNGA 3 cut(s) 75, 442, 658
Hpy188III TCNNGA 4 cut(s) 53, 148, 215, 767
Hpy8I GTNNAC 3 cut(s) 556, 700, 726
HpyAV CCTTC 5 cut(s) 68, 175, 189, 416, 527
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 4 cut(s) 249, 260, 521, 580
HpyF10VI GCNNNNNNNGC 4 cut(s) 467, 479, 498, 842
HpyF3I CTNAG 3 cut(s) 51, 310, 439
HpySE526I ACGT 1 cut(s) 558
Hsp92II CATG 2 cut(s) 100, 775
HspAI GCGC 1 cut(s) 204
KspI CCGCGG 1 cut(s) 837
Kzo9I GATC 4 cut(s) 350, 367, 409, 751
LguI GCTCTTC 2 cut(s) 285, 324
Lsp1109I GCAGC 4 cut(s) 272, 457, 469, 533
LweI GCATC 4 cut(s) 448, 510, 637, 768
MaeI CTAG 4 cut(s) 90, 455, 464, 749
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 1 cut(s) 610
MalI GATC 4 cut(s) 352, 369, 411, 753
MboI GATC 4 cut(s) 350, 367, 409, 751
MboII GAAGA 6 cut(s) 223, 302, 311, 366, 671, 863
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 2 cut(s) 409, 751
MluCI AATT 3 cut(s) 363, 384, 572
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 2 cut(s) 53, 278
MnlI CCTC 7 cut(s) 268, 275, 544, 562, 616, 655, 795
MseI TTAA 2 cut(s) 477, 617
MspA1I CMGCKG 2 cut(s) 524, 836
MunI CAATTG 1 cut(s) 384
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 4 cut(s) 467, 479, 498, 842
NdeI CATATG 1 cut(s) 716
NdeII GATC 4 cut(s) 350, 367, 409, 751
NlaIII CATG 2 cut(s) 100, 775
NlaIV GGNNCC 1 cut(s) 157
NmeAIII GCCGAG 1 cut(s) 659
PceI AGGCCT 1 cut(s) 426
PciSI GCTCTTC 2 cut(s) 285, 324
PfeI GAWTC 2 cut(s) 665, 821
PkrI GCNGC 6 cut(s) 262, 472, 484, 523, 835, 838
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 2 cut(s) 55, 93
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 2 cut(s) 262, 582
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 2 cut(s) 409, 751
PvuII CAGCTG 1 cut(s) 524
SacII CCGCGG 1 cut(s) 837
SapI GCTCTTC 2 cut(s) 285, 324
SaqAI TTAA 2 cut(s) 477, 617
SatI GCNGC 6 cut(s) 261, 471, 483, 522, 834, 837
Sau3AI GATC 4 cut(s) 350, 367, 409, 751
Sau96I GGNCC 2 cut(s) 55, 93
SchI GAGTC 1 cut(s) 123
SfaNI GCATC 4 cut(s) 448, 510, 637, 768
SfcI CTRYAG 3 cut(s) 15, 258, 578
Sfr303I CCGCGG 1 cut(s) 837
SgrBI CCGCGG 1 cut(s) 837
SinI GGWCC 1 cut(s) 55
Sse9I AATT 3 cut(s) 363, 384, 572
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 5 cut(s) 300, 339, 743, 834, 836
SspI AATATT 1 cut(s) 270
SspMI CTAG 4 cut(s) 90, 455, 464, 749
StuI AGGCCT 1 cut(s) 426
StyI CCWWGG 2 cut(s) 89, 463
TaiI ACGT 1 cut(s) 561
TasI AATT 3 cut(s) 363, 384, 572
TauI GCSGC 2 cut(s) 836, 839
TfiI GAWTC 2 cut(s) 665, 821
Tru1I TTAA 2 cut(s) 477, 617
Tru9I TTAA 2 cut(s) 477, 617
TscAI CASTG 2 cut(s) 70, 181
TseI GCWGC 4 cut(s) 260, 470, 482, 521
TspDTI ATGAA 4 cut(s) 22, 126, 223, 689
TspGWI ACGGA 2 cut(s) 459, 635
TspRI CASTG 2 cut(s) 70, 181
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 219
XapI RAATTY 1 cut(s) 572
XmaJI CCTAGG 2 cut(s) 89, 463
XspI CTAG 4 cut(s) 90, 455, 464, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.